HHsearch alignment for GI: 254780281 and conserved domain: cd03010
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.77 E-value=2.5e-18 Score=131.49 Aligned_cols=123 Identities=21% Similarity=0.211 Sum_probs=94.2
Q ss_pred CCCCEEEECCCCC--EECHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHH
Q ss_conf 6787079829997--96778849967999960477765446888877655543024433305887651433333057777
Q gi|254780281|r 35 FNSDVHLVAQDGT--DFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKK 112 (201)
Q Consensus 35 ~~~~f~L~d~~G~--~~~~~~~~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~~~~v~~v~IsvDP~rDt~e~l~~ 112 (201)
T Consensus 2 pAP~f~l~~ldG~~~~ls~~d~kGk~vvl~FWAtWC~-pC~~e~P~l~~l~~~-----~~~~vv~v~~~---d~~~~~~~ 72 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCA-PCREEHPVLMALARQ-----GRVPIYGINYK---DNPENALA 72 (127)
T ss_pred CCCCEECCCCCCCCEEECHHHHCCCEEEEEEECCCCH-HHHHHCCHHHHHHHC-----CCEEEEEEECC---CCHHHHHH
T ss_conf 8996271177899528569992999899999989586-688868107888425-----83589986347---89999999
Q ss_pred HHHHCCCCEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCHHHH
Q ss_conf 75313686422458988989888860908862256556777752587420699985898299985789888999
Q gi|254780281|r 113 FVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPYKDDSDSA 186 (201)
Q Consensus 113 y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~~~~~~~i 186 (201)
T Consensus 73 ~~~~~~~~~~~~~~D~~--~~~~~~~~v~------------------~~Ptt~liD~~G~I~~~~~G~i~~e~l 126 (127)
T cd03010 73 WLARHGNPYAAVGFDPD--GRVGIDLGVY------------------GVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred HHHHHCCCCCEEEECCC--CCHHHHCCCC------------------CCCCEEEEECCCEEEEEEECCCCHHHC
T ss_conf 99983998644775588--6322307855------------------478199991999799999848996993