HHsearch alignment for GI: 254780281 and conserved domain: cd03023
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=91.91 E-value=0.54 Score=26.86 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=65.0
Q ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEE---CCCCCCHHHHHHHHHHCCCC--EEC------
Q ss_conf 9967999960477765446888877655543024433305887651---43333305777775313686--422------
Q gi|254780281|r 55 YIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITV---DPKRDTPEVMKKFVQRFSDR--IIG------ 123 (201)
Q Consensus 55 ~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~~~~v~~v~Isv---DP~rDt~e~l~~y~~~~~~~--~~~------ 123 (201)
T Consensus 4 ~A~v~ivef~d~~Cp-~C~~~~~~l~~~~~~~~----~v~~~~~~~P~~~~~~~~aa~~~~~~~~~~~~~f~~~~~~l~~ 78 (154)
T cd03023 4 NGDVTIVEFFDYNCG-YCKKLAPELEKLLKEDP----DVRVVFKEFPILGESSVLAARVALAVWKNGPGKYLEFHNALMA 78 (154)
T ss_pred CCCEEEEEEECCCCH-HHHHHHHHHHHHHHHCC----CCEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 999999998899986-37888899999998588----7048855064256463999999999998681259999999998
Q ss_pred --CCCCHHHHHHHHHHCCEEEEECCCC------------CCCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCHHHHHHH
Q ss_conf --4589889898888609088622565------------56777752587420699985898299985789888999999
Q gi|254780281|r 124 --ISGDPIDVMRVAKNFRIYVNNVLAE------------KSGVEEKYFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEK 189 (201)
Q Consensus 124 --ltg~~~~i~~l~~~~~v~~~~~~~~------------~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~~~~~~~i~~~ 189 (201)
T Consensus 79 ~~~~~~~~~l~~~a~~~gld~~~f~~~~~s~~~~~~v~~~~~~a~~~gI~gTPt~~I---ng~~---~~G~~~~~~l~~~ 152 (154)
T cd03023 79 TRGRLNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFII---GDTV---IPGAVPADTLKEA 152 (154)
T ss_pred HCCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEE---CCEE---ECCCCCHHHHHHH
T ss_conf 364203899999999839988999988658889999999899999859978998989---9999---4388999999997
Q ss_pred H
Q ss_conf 9
Q gi|254780281|r 190 I 190 (201)
Q Consensus 190 i 190 (201)
T Consensus 153 i 153 (154)
T cd03023 153 I 153 (154)
T ss_pred H
T ss_conf 5