HHsearch alignment for GI: 254780281 and conserved domain: pfam00085

>pfam00085 Thioredoxin Thioredoxin. Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise.
Probab=97.56  E-value=0.00029  Score=46.55  Aligned_cols=87  Identities=17%  Similarity=0.259  Sum_probs=59.5

Q ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEECCCCCHHHHHHH
Q ss_conf             99679999604777654468888776555430244333058876514333330577777531368642245898898988
Q gi|254780281|r   55 YIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRV  134 (201)
Q Consensus        55 ~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~~~~v~~v~IsvDP~rDt~e~l~~y~~~~~~~~~~ltg~~~~i~~l  134 (201)
T Consensus        17 ~~k~vlv~F~a~wC~-~C~~~~~~~~~~a~~~~~---~~~~~~vd~d---~~~-------------------------~~   64 (104)
T pfam00085        17 SDKPVLVDFYAPWCG-PCKALAPEYEKLAQEYKD---DVKFAKVDAD---ENP-------------------------DL   64 (104)
T ss_pred             CCCCEEEEEECCCCH-HHHHCCHHHHHHCCCCCC---CCCCCCCCCC---CCH-------------------------HH
T ss_conf             899499999899985-045107044442222211---0122001465---485-------------------------35


Q ss_pred             HHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf             8860908862256556777752587420699985898299985789888999999999
Q gi|254780281|r  135 AKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINR  192 (201)
Q Consensus       135 ~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~~~~~~~i~~~i~~  192 (201)
T Consensus        65 ~~~~~i~~------------------~Pti~~~-~~G~~v~~~~G~~~~e~l~~~i~~  103 (104)
T pfam00085        65 ASEYGVRG------------------FPTIKFF-KNGKKVSDYVGARTKDDLVAFIKK  103 (104)
T ss_pred             HHCCCCEE------------------CCEEEEE-ECCEEEEEEECCCCHHHHHHHHHH
T ss_conf             32479625------------------0908999-899598888789999999999973