HHsearch alignment for GI: 254780281 and conserved domain: pfam02630
>pfam02630 SCO1-SenC SCO1/SenC. This family is involved in biogenesis of respiratory and photosynthetic systems. SCO1 is required for a post-translational step in the accumulation of subunits COXI and COXII of cytochrome c oxidase. SenC is required for optimal cytochrome c oxidase activity and maximal induction of genes encoding the light-harvesting and reaction centre complexes of R. capsulatus.
Probab=100.00 E-value=1.4e-44 Score=289.94 Aligned_cols=149 Identities=33% Similarity=0.698 Sum_probs=139.1
Q ss_pred CCCCCCCCCCEEEECCCCCEECHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHH
Q ss_conf 67666667870798299979677884996799996047776544688887765554302443330588765143333305
Q gi|254780281|r 29 VDGNRRFNSDVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPE 108 (201)
Q Consensus 29 ~~~~~~~~~~f~L~d~~G~~~~~~~~~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~~~~v~~v~IsvDP~rDt~e 108 (201)
T Consensus 10 ~~~~~~igg~F~L~dq~G~~~t~~~l~Gk~~lv~FgfT~CpdiCP~~~~~l~~~~~~l~~~~~~v~~v~iTvDPerDTpe 89 (159)
T pfam02630 10 NRPKNSLGGPFTLIDQNGKNFTSENLKGKLSLIYFGFTNCPDICPPALDRLTDIIKKLKAENIDVQPVFISVDPERDTPK 89 (159)
T ss_pred CCCCCCCCCCEEEEECCCCEECHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHH
T ss_conf 69987758982898289999767995998899999888999645899999999999853047755999999624889999
Q ss_pred HHHHHHHHCCCCEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECC
Q ss_conf 77777531368642245898898988886090886225655677775258742069998589829998578
Q gi|254780281|r 109 VMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPY 179 (201)
Q Consensus 109 ~l~~y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~ 179 (201)
T Consensus 90 ~L~~Y~~~f~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~--~~~y~v~Hs~~~~LiD~~G~i~~~y~~ 158 (159)
T pfam02630 90 VLKEYLKNFHPSFIGLTGTTDEIKSVAKKFKVFYSKVIVDKP--EQDYLVDHSSFFYLIDPDGKILKHYNL 158 (159)
T ss_pred HHHHHHHHCCCCCCEEECCHHHHHHHHHHHCCEEEECCCCCC--CCCCEEECCCEEEEECCCCCEEEECCC
T ss_conf 999999972998553489999999999971860896465689--988547557779999699989745179