HHsearch results for GI: 254780281 and protein with PDBid: 2k6v_A

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=100.00  E-value=1.2e-40  Score=264.88  Aligned_cols=155  Identities=30%  Similarity=0.588  Sum_probs=140.5

Q ss_pred             CCCCEEEECCCCCEECHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCCHHHHHHH
Q ss_conf             6787079829997967788499679999604777654468888776555430244-333058876514333330577777
Q gi|254780281|r   35 FNSDVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPT-GTLLNAYFITVDPKRDTPEVMKKF  113 (201)
Q Consensus        35 ~~~~f~L~d~~G~~~~~~~~~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~-~~~v~~v~IsvDP~rDt~e~l~~y  113 (201)
                      ..+||+|+|++| ++++++|+|||++|+|||||||++||.++++|++++++++++ ..++++++||+||+||||++|++|
T Consensus        15 ~~~dF~L~d~~G-~~~l~d~~Gk~~vl~F~yt~Cp~~Cp~~~~~l~~~~~~l~~~~~~~v~~l~isvDP~~Dtp~~l~~y   93 (172)
T 2k6v_A           15 KPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRY   93 (172)
T ss_dssp             EECCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHH
T ss_pred             CCCCEEEECCCC-CEEHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH
T ss_conf             789838987999-8956996998899999888899858799999998876533313664589970488354617799998


Q ss_pred             HHHCCCCEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECC--CCCHHHHHHHHH
Q ss_conf             531368642245898898988886090886225655677775258742069998589829998578--988899999999
Q gi|254780281|r  114 VQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPY--KDDSDSAIEKIN  191 (201)
Q Consensus       114 ~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~--~~~~~~i~~~i~  191 (201)
                      ++.|+++|++|||+.+++++++++||++|.+.....   +..|+++|++.+||+| +|+++++|.+  ..++++++++|+
T Consensus        94 ~~~~~~~~~~ltg~~~~i~~v~~~~gv~~~~~~~~~---~~~y~i~Hs~~~~Lid-~G~~~~~~~~~~~~~~~~i~~dl~  169 (172)
T 2k6v_A           94 AKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRG---PGEYLVDHTATTFVVK-EGRLVLLYSPDKAEATDRVVADLQ  169 (172)
T ss_dssp             HHHHCTTEEEECCCHHHHHHHHHHHTCCEEEEEEEE---TTEEEEEECCCEEEEE-TTEEEEEECHHHHTCHHHHHHHHH
T ss_pred             HHHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCC---CCCCEEECCEEEEEEC-CCCEEEEECCCCCCCHHHHHHHHH
T ss_conf             876188745655999999999997294798346789---9974586634699985-993999986898868999999999


Q ss_pred             HHH
Q ss_conf             998
Q gi|254780281|r  192 RLI  194 (201)
Q Consensus       192 ~ll  194 (201)
                      .||
T Consensus       170 ~LL  172 (172)
T 2k6v_A          170 ALL  172 (172)
T ss_dssp             HCC
T ss_pred             HHC
T ss_conf             869