HHsearch results for GI: 254780281 and protein with PDBid: 2k6v_A
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=100.00 E-value=1.2e-40 Score=264.88 Aligned_cols=155 Identities=30% Similarity=0.588 Sum_probs=140.5
Q ss_pred CCCCEEEECCCCCEECHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCCHHHHHHH
Q ss_conf 6787079829997967788499679999604777654468888776555430244-333058876514333330577777
Q gi|254780281|r 35 FNSDVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPT-GTLLNAYFITVDPKRDTPEVMKKF 113 (201)
Q Consensus 35 ~~~~f~L~d~~G~~~~~~~~~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~-~~~v~~v~IsvDP~rDt~e~l~~y 113 (201)
..+||+|+|++| ++++++|+|||++|+|||||||++||.++++|++++++++++ ..++++++||+||+||||++|++|
T Consensus 15 ~~~dF~L~d~~G-~~~l~d~~Gk~~vl~F~yt~Cp~~Cp~~~~~l~~~~~~l~~~~~~~v~~l~isvDP~~Dtp~~l~~y 93 (172)
T 2k6v_A 15 KPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRY 93 (172)
T ss_dssp EECCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHH
T ss_pred CCCCEEEECCCC-CEEHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH
T ss_conf 789838987999-8956996998899999888899858799999998876533313664589970488354617799998
Q ss_pred HHHCCCCEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECC--CCCHHHHHHHHH
Q ss_conf 531368642245898898988886090886225655677775258742069998589829998578--988899999999
Q gi|254780281|r 114 VQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPY--KDDSDSAIEKIN 191 (201)
Q Consensus 114 ~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~--~~~~~~i~~~i~ 191 (201)
++.|+++|++|||+.+++++++++||++|.+..... +..|+++|++.+||+| +|+++++|.+ ..++++++++|+
T Consensus 94 ~~~~~~~~~~ltg~~~~i~~v~~~~gv~~~~~~~~~---~~~y~i~Hs~~~~Lid-~G~~~~~~~~~~~~~~~~i~~dl~ 169 (172)
T 2k6v_A 94 AKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRG---PGEYLVDHTATTFVVK-EGRLVLLYSPDKAEATDRVVADLQ 169 (172)
T ss_dssp HHHHCTTEEEECCCHHHHHHHHHHHTCCEEEEEEEE---TTEEEEEECCCEEEEE-TTEEEEEECHHHHTCHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCC---CCCCEEECCEEEEEEC-CCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 876188745655999999999997294798346789---9974586634699985-993999986898868999999999
Q ss_pred HHH
Q ss_conf 998
Q gi|254780281|r 192 RLI 194 (201)
Q Consensus 192 ~ll 194 (201)
.||
T Consensus 170 ~LL 172 (172)
T 2k6v_A 170 ALL 172 (172)
T ss_dssp HCC
T ss_pred HHC
T ss_conf 869