HHsearch results for GI: 254780281 and protein with PDBid: 3f9u_A
>3f9u_A Putative exported cytochrome C biogenesis- related protein; structural genomics, PSI-2, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343}
Probab=98.79 E-value=2.3e-09 Score=76.08 Aligned_cols=124 Identities=12% Similarity=0.063 Sum_probs=71.5
Q ss_pred CEECHHHHCCCEEEEEEECCCCCCCCHHHHHHH---HHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCC-CCEE
Q ss_conf 796778849967999960477765446888877---655543024433305887651433333057777753136-8642
Q gi|254780281|r 47 TDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRL---DRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKKFVQRFS-DRII 122 (201)
Q Consensus 47 ~~~~~~~~~Gk~~li~F~~T~Cpd~Cp~~l~~l---~~~~~~l~~~~~~v~~v~IsvDP~rDt~e~l~~y~~~~~-~~~~ 122 (201)
+.+.++..+||+++|+||.|||+ .|..+-..+ ..+.+.+. .++.++.|.+|-..+. ....+... ....
T Consensus 38 ~al~~Ak~~gKpvll~F~A~WC~-~C~~m~~~~~~~~~~~~~~~---~~~~~v~i~~~~~~~~----~~~~~~~~~~~~~ 109 (172)
T 3f9u_A 38 LGMEYARQHNKPVMLDFTGYGCV-NCRKMELAVWTDPKVSSIIN---NDYVLITLYVDNKTPL----TEPVKIMENGTER 109 (172)
T ss_dssp HHHHHHHHTTCCEEEEEECTTCH-HHHHHHHHTTTSHHHHHHHH---HHCEEEEEETTCCCEE----EEEEEEEETTEEE
T ss_pred HHHHHHHHCCCEEEEEEECCCCH-HHHHHHHHCCCCHHHHHHCC---CCEEEEEEECCCCCCH----HHHHHHHHCCCCC
T ss_conf 99999998399399999767288-78987664024888887433---6549999978898520----1788875213433
Q ss_pred CC-CCCHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECC-CCCHHHHHHHHHHHHHH
Q ss_conf 24-5898898988886090886225655677775258742069998589829998578-98889999999999851
Q gi|254780281|r 123 GI-SGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPY-KDDSDSAIEKINRLITY 196 (201)
Q Consensus 123 ~l-tg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~-~~~~~~i~~~i~~ll~~ 196 (201)
.. ....+....++..|++. -.+++++|||+|+++....+ ..+.+...+.|++.|.+
T Consensus 110 ~~~~~~~~~~~~~~~~y~v~------------------g~Pt~v~id~~Gkii~~~~G~~~~~~~f~~~L~~~l~~ 167 (172)
T 3f9u_A 110 TLRTVGDKWSYLQRVKFGAN------------------AQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLEN 167 (172)
T ss_dssp EEEEHHHHHHHHHHHHHSCC------------------CSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHCCCC------------------CCCEEEEECCCCCEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 11244412679999973888------------------86569999999989505557888999999999999999