BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780281|ref|YP_003064694.1| cytochrome-c oxidase assembly
factor protein [Candidatus Liberibacter asiaticus str. psy62]
         (201 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780281|ref|YP_003064694.1| cytochrome-c oxidase assembly factor protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 201

 Score =  405 bits (1040), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/201 (100%), Positives = 201/201 (100%)

Query: 1   MKALGIILGTILLAVLGSIAYVSFSSKFVDGNRRFNSDVHLVAQDGTDFSLSSLYIKPSI 60
           MKALGIILGTILLAVLGSIAYVSFSSKFVDGNRRFNSDVHLVAQDGTDFSLSSLYIKPSI
Sbjct: 1   MKALGIILGTILLAVLGSIAYVSFSSKFVDGNRRFNSDVHLVAQDGTDFSLSSLYIKPSI 60

Query: 61  VFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKKFVQRFSDR 120
           VFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKKFVQRFSDR
Sbjct: 61  VFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKKFVQRFSDR 120

Query: 121 IIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPYK 180
           IIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPYK
Sbjct: 121 IIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPYK 180

Query: 181 DDSDSAIEKINRLITYGNVVK 201
           DDSDSAIEKINRLITYGNVVK
Sbjct: 181 DDSDSAIEKINRLITYGNVVK 201


>537021.9.peg.817_1 
          Length = 148

 Score = 25.0 bits (53), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 9/32 (28%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 102 PKRDTPEVMKKFVQRFSDRIIGISGDPIDVMR 133
           P++DT  + K  ++RF+  + G+ G P+ +++
Sbjct: 52  PRKDTKSIAKALLKRFAT-LGGVFGAPLHLLQ 82


>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 631

 Score = 24.6 bits (52), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 149 KSGVEEKYFVDHTTALL-LFDTAGSIVG 175
           + G+ EK ++DH T +L   D  G  VG
Sbjct: 143 REGINEKEYIDHYTKMLSRTDVVGMFVG 170


>gi|254780424|ref|YP_003064837.1| transcriptional regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 144

 Score = 22.7 bits (47), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 88  PTGTLLNAYFITVD 101
           P G  LN YFI +D
Sbjct: 98  PDGLQLNRYFIQID 111


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.140    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,774
Number of Sequences: 1233
Number of extensions: 5466
Number of successful extensions: 15
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 4
length of query: 201
length of database: 328,796
effective HSP length: 70
effective length of query: 131
effective length of database: 242,486
effective search space: 31765666
effective search space used: 31765666
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 36 (18.5 bits)