HHsearch alignment for GI: 254780282 and conserved domain: CHL00180

>CHL00180 rbcR LysR transcriptional regulator; Provisional.
Probab=100.00  E-value=0  Score=385.31  Aligned_cols=293  Identities=22%  Similarity=0.184  Sum_probs=253.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHH
Q ss_conf             98888999999999982768999988289978999999999999588217976994685001343322222222221012
Q gi|254780282|r    1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETT   80 (299)
Q Consensus         1 m~md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~   80 (299)
T Consensus         3 ~~~tL~qL~~F~~va~~gsft~AA~~L~isQpavS~~I~~LE~~lg~~Lf~R~~r~v~LT~aG~~l~~~a~~il~~~~~~   82 (307)
T CHL00180          3 LPFTLDQLRILKAIASEGSFKKAAESLYVSQPAVSLQIQNLEKQLNIPLFDRGGRKALLTEAGHLLLRYGERILALCEET   82 (307)
T ss_pred             CCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf             98489999999999980999999999888878999999999998699928998991010987999999899999999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf             210012232222223332111000000000135667542000122222222---22222222222234565--4321111
Q gi|254780282|r   81 QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRK--PIQSSSL  155 (299)
Q Consensus        81 ~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~--~~~~~~l  155 (299)
T Consensus        83 ~~~~~~~~~~~~g~lrI~~~~s~~~~~lp~~l~~f~~~~P~v~i~l~~~~~~~~~~~l~~~~~D~~i~~~~~~~~~~~~l  162 (307)
T CHL00180         83 CRALEDLKNLQGGTLIIGASQTTGTYLMPRLIGLFRQKYPQIAVQLQVHSTRRIAWSVANGQIDLAIIGGEVPTELKDNL  162 (307)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCEEEEEECCCCCCCCCCCE
T ss_conf             97799875112586010104066666435889999998889972789779999999998798009997577886667854


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHH
Q ss_conf             22345554332112344321112222221100011235664332110002356652022343212114532420013567
Q gi|254780282|r  156 IQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC  235 (299)
Q Consensus       156 ~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v  235 (299)
T Consensus       163 ~~~~l~~~~~~lv~~~~hpla~~~~v~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~v  241 (307)
T CHL00180        163 QVTPYAEDELALILPKSHPFAKLKKIQKEDLYRLRFIALDSQSTIRKVIDNILIQNGIDS-SRFKIEMELNSIEAIKNAV  241 (307)
T ss_pred             EEEEEECCCEEEEECCCCHHHCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCC-CCCEEEEEECCHHHHHHHH
T ss_conf             999943242799973898022399999999817984871799968999999999769984-5542799978099999999


Q ss_pred             HHHCCEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             8738423311777601---9984661776667660089993487788889999999999998
Q gi|254780282|r  236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA  294 (299)
Q Consensus       236 ~~g~Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~  294 (299)
T Consensus       242 ~~g~Gia~lP~~~v~~~~~~g~l~~~~~~~~~~~r~i~lv~~~~r~~s~a~~~F~~~l~~~f  303 (307)
T CHL00180        242 QSGLGAAFVSVSAIEKELELGTLHWAKIENITIKRTLSIITNPNRYRSKAAETFSKEILTLF  303 (307)
T ss_pred             HHCCEEEECCHHHHHHHHHCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             93994998259999989877988999789998504999999795977999999999999854