HHsearch alignment for GI: 254780282 and conserved domain: COG0583
>COG0583 LysR Transcriptional regulator [Transcription].
Probab=100.00 E-value=0 Score=311.87 Aligned_cols=288 Identities=30% Similarity=0.356 Sum_probs=235.2
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~ 82 (299)
T Consensus 1 ~~l~~L~~F~~v~~~gs~t~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~ 80 (297)
T COG0583 1 MDLRQLRAFVAVAEEGSFTRAAERLGLSQSAVSRQIKRLEEELGVPLFERTTRRVRLTEAGERLLERARRILAELEEALA 80 (297)
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98789999999984599899998839990589999999999849864886799845588899999999999999999999
Q ss_pred HCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 0012232222-223332111000000000135667542000122222222-2222222222223456543211-112234
Q gi|254780282|r 83 ELQESSVKPS-GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK-DIDISMDYADCAIRLRKPIQSS-SLIQRK 159 (299)
Q Consensus 83 ~~~~~~~~~~-g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~-~~~l~~~~~Di~i~~~~~~~~~-~l~~~~ 159 (299)
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~l~~f~~~~P~~~~~~~~~~~~~~~l~~~~~D~~i~~~~~-~~~~~~~~~~ 159 (297)
T COG0583 81 EAARLARGEPGGLLRIAAPSTAASSLLPPLLARFRARYPEIELELGTSDRLLEDLVEGELDLAIRAGPP-PPPDGLVARP 159 (297)
T ss_pred HHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCEEEEEECCC-CCCCCEEEEE
T ss_conf 997512567775599996707679999999999999789839998256649999877993499995886-6888746889
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHC
Q ss_conf 55543321123443211122222211000112356643321100023566520223432121145324200135678738
Q gi|254780282|r 160 LVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 (299)
Q Consensus 160 l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~ 239 (299)
T Consensus 160 l~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~g~ 233 (297)
T COG0583 160 LFSEELVLVVPASHPLAARHG--LPDLPGEPLILLEHGCILRRLLDQALALAGWR----PRIRLEVNSAEALLQAVAAGL 233 (297)
T ss_pred EECCCEEEEEECCCHHHHCCC--CCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCC----CCCEEEECCHHHHHHHHHHCC
T ss_conf 603647999957846651478--64477241230676531577667788862466----686599990999999999699
Q ss_pred CEEEEEHHHHCCC--CCEEEECCCCC-CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 4233117776019--98466177666-7660089993487788889999999999998506
Q gi|254780282|r 240 GIALLPDYIVKDN--PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 (299)
Q Consensus 240 Gia~lp~~~~~~~--~~lv~i~~~~~-~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~~ 297 (299)
T Consensus 234 gi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 294 (297)
T COG0583 234 GIALLPESLARPDLAGRLVRVLPLPPPPLPRPLYLVWRKSRLLSPAVRAFIDFLREALARL 294 (297)
T ss_pred CEEEECHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8386419999887548918995477788776399999588668989999999999997653