HHsearch alignment for GI: 254780282 and conserved domain: COG0583

>COG0583 LysR Transcriptional regulator [Transcription].
Probab=100.00  E-value=0  Score=311.87  Aligned_cols=288  Identities=30%  Similarity=0.356  Sum_probs=235.2

Q ss_pred             CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf             88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r    3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI   82 (299)
Q Consensus         3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~   82 (299)
T Consensus         1 ~~l~~L~~F~~v~~~gs~t~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~   80 (297)
T COG0583           1 MDLRQLRAFVAVAEEGSFTRAAERLGLSQSAVSRQIKRLEEELGVPLFERTTRRVRLTEAGERLLERARRILAELEEALA   80 (297)
T ss_pred             CCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98789999999984599899998839990589999999999849864886799845588899999999999999999999


Q ss_pred             HCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf             0012232222-223332111000000000135667542000122222222-2222222222223456543211-112234
Q gi|254780282|r   83 ELQESSVKPS-GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK-DIDISMDYADCAIRLRKPIQSS-SLIQRK  159 (299)
Q Consensus        83 ~~~~~~~~~~-g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~-~~~l~~~~~Di~i~~~~~~~~~-~l~~~~  159 (299)
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~l~~f~~~~P~~~~~~~~~~~~~~~l~~~~~D~~i~~~~~-~~~~~~~~~~  159 (297)
T COG0583          81 EAARLARGEPGGLLRIAAPSTAASSLLPPLLARFRARYPEIELELGTSDRLLEDLVEGELDLAIRAGPP-PPPDGLVARP  159 (297)
T ss_pred             HHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCEEEEEECCC-CCCCCEEEEE
T ss_conf             997512567775599996707679999999999999789839998256649999877993499995886-6888746889


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHC
Q ss_conf             55543321123443211122222211000112356643321100023566520223432121145324200135678738
Q gi|254780282|r  160 LVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS  239 (299)
Q Consensus       160 l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~  239 (299)
T Consensus       160 l~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~g~  233 (297)
T COG0583         160 LFSEELVLVVPASHPLAARHG--LPDLPGEPLILLEHGCILRRLLDQALALAGWR----PRIRLEVNSAEALLQAVAAGL  233 (297)
T ss_pred             EECCCEEEEEECCCHHHHCCC--CCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCC----CCCEEEECCHHHHHHHHHHCC
T ss_conf             603647999957846651478--64477241230676531577667788862466----686599990999999999699


Q ss_pred             CEEEEEHHHHCCC--CCEEEECCCCC-CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             4233117776019--98466177666-7660089993487788889999999999998506
Q gi|254780282|r  240 GIALLPDYIVKDN--PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW  297 (299)
Q Consensus       240 Gia~lp~~~~~~~--~~lv~i~~~~~-~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~~  297 (299)
T Consensus       234 gi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  294 (297)
T COG0583         234 GIALLPESLARPDLAGRLVRVLPLPPPPLPRPLYLVWRKSRLLSPAVRAFIDFLREALARL  294 (297)
T ss_pred             CEEEECHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             8386419999887548918995477788776399999588668989999999999997653