HHsearch alignment for GI: 254780282 and conserved domain: COG1321
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription].
Probab=96.78 E-value=0.0031 Score=38.09 Aligned_cols=78 Identities=24% Similarity=0.323 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHCC---HHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf 899999999998276---89999882899789999999999995882179769946850013433222222222210122
Q gi|254780282|r 5 WDKLRVFYVVARSGS---FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQ 81 (299)
Q Consensus 5 ~~~L~~f~~v~~~gs---~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~ 81 (299)
T Consensus 9 edYL~~Iy~l~~~~~~~~~~diA~~L~Vsp~sVt~ml~rL~~-~GlV~~~~-y~gi~LT~~G~~~a~~~~r~hrlle~fL 86 (154)
T COG1321 9 EDYLETIYELLEEKGFARTKDIAERLKVSPPSVTEMLKRLER-LGLVEYEP-YGGVTLTEKGREKAKELLRKHRLLERFL 86 (154)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH-CCCEEEEC-CCCEEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999984368751999999858992789999999987-89978845-8886788354899999999999999999
Q ss_pred HHC
Q ss_conf 100
Q gi|254780282|r 82 IEL 84 (299)
Q Consensus 82 ~~~ 84 (299)
T Consensus 87 ~~~ 89 (154)
T COG1321 87 VDV 89 (154)
T ss_pred HHH
T ss_conf 998