HHsearch alignment for GI: 254780282 and conserved domain: COG1321

>COG1321 TroR Mn-dependent transcriptional regulator [Transcription].
Probab=96.78  E-value=0.0031  Score=38.09  Aligned_cols=78  Identities=24%  Similarity=0.323  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHCC---HHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf             899999999998276---89999882899789999999999995882179769946850013433222222222210122
Q gi|254780282|r    5 WDKLRVFYVVARSGS---FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQ   81 (299)
Q Consensus         5 ~~~L~~f~~v~~~gs---~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~   81 (299)
T Consensus         9 edYL~~Iy~l~~~~~~~~~~diA~~L~Vsp~sVt~ml~rL~~-~GlV~~~~-y~gi~LT~~G~~~a~~~~r~hrlle~fL   86 (154)
T COG1321           9 EDYLETIYELLEEKGFARTKDIAERLKVSPPSVTEMLKRLER-LGLVEYEP-YGGVTLTEKGREKAKELLRKHRLLERFL   86 (154)
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH-CCCEEEEC-CCCEEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999984368751999999858992789999999987-89978845-8886788354899999999999999999


Q ss_pred             HHC
Q ss_conf             100
Q gi|254780282|r   82 IEL   84 (299)
Q Consensus        82 ~~~   84 (299)
T Consensus        87 ~~~   89 (154)
T COG1321          87 VDV   89 (154)
T ss_pred             HHH
T ss_conf             998