HHsearch alignment for GI: 254780282 and conserved domain: PRK09791

>PRK09791 putative DNA-binding transcriptional regulator; Provisional.
Probab=100.00  E-value=0  Score=378.52  Aligned_cols=290  Identities=17%  Similarity=0.234  Sum_probs=250.0

Q ss_pred             CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHH
Q ss_conf             98888999999999982768999988289978999999999999588217976994685001343322222222221012
Q gi|254780282|r    1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETT   80 (299)
Q Consensus         1 m~md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~   80 (299)
T Consensus         3 ~~m~l~qLr~F~av~~~gs~s~AA~~L~isQpavS~~I~~LE~~lg~~LF~R~~r~~~LT~~G~~l~~~a~~il~~~~~~   82 (302)
T PRK09791          3 FQVKIHQIRAFVEVARQGSIRGASRMLNMSQPALSKSIQELEEGLAAQLFFRRSKGVTLTDAGESFYQHASLILEELRAA   82 (302)
T ss_pred             CCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             88739999999999980999999999789879999999999999599689999998354779999999999999999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf             210012232222223332111000000000135667542000122222222---2222222222223456-543211112
Q gi|254780282|r   81 QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLR-KPIQSSSLI  156 (299)
Q Consensus        81 ~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~-~~~~~~~l~  156 (299)
T Consensus        83 ~~~~~~~~~~~~G~l~Ig~~~~~~~~~lp~~l~~f~~~~P~v~i~i~~~~~~~~~~~l~~g~~D~~i~~~~~~~~~~~l~  162 (302)
T PRK09791         83 QEDIRQRQGQLAGQINIGMGASISRSLMPAVISRFHQQHPQVKVRIMEGQLVSMINELRQGELDFTINTYYQGPYDHEFT  162 (302)
T ss_pred             HHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCCEE
T ss_conf             99999850676633999862688987119999999998879779999899999999998799778996567887887647


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHH
Q ss_conf             23455543321123443211122222211000112356643321100023566520223432121145324200135678
Q gi|254780282|r  157 QRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV  236 (299)
Q Consensus       157 ~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~  236 (299)
T Consensus       163 ~~~l~~~~~~~v~~~~hpl~~~--~~l~~l~~~~~~~~~~~~~~~----~~~~~~~~~~g~~p~~~~~~~~~~~~~~lv~  236 (302)
T PRK09791        163 FEKLLEKQFAIFCRPGHPAIGA--RSIKQLLDYSWTMPTPHGSYY----KQLSELLDDQAQTPQVGVVCETFSACISLVA  236 (302)
T ss_pred             EEEEEEEEEEEEECCCCCCCCC--CCHHHHHCCCEEEECCCCCHH----HHHHHHHHHCCCCCCEEEEECCHHHHHHHHH
T ss_conf             9997740159998389843579--899998479938757999799----9999999967999856999992999999999


Q ss_pred             HHCCEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             738423311777601---998466177666766008999348778888999999999999850
Q gi|254780282|r  237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD  296 (299)
Q Consensus       237 ~g~Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~  296 (299)
T Consensus       237 ~g~gv~ilp~~~~~~~~~~~~lv~lpl~~~~~~~~~~lv~r~~~~~spa~~~fi~~lr~~~~~  299 (302)
T PRK09791        237 KSDFLSILPEEMGCDPLHGQGLVMLPVSEILPKAAYYLIQRRDSRQTPLTASLITQFRRECGY  299 (302)
T ss_pred             HCCEEEEECHHHHHHHHHCCCEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf             789679631999987874899999979998860089999989098899999999999999887