HHsearch alignment for GI: 254780282 and conserved domain: PRK09791
>PRK09791 putative DNA-binding transcriptional regulator; Provisional.
Probab=100.00 E-value=0 Score=378.52 Aligned_cols=290 Identities=17% Similarity=0.234 Sum_probs=250.0
Q ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHH
Q ss_conf 98888999999999982768999988289978999999999999588217976994685001343322222222221012
Q gi|254780282|r 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETT 80 (299)
Q Consensus 1 m~md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~ 80 (299)
T Consensus 3 ~~m~l~qLr~F~av~~~gs~s~AA~~L~isQpavS~~I~~LE~~lg~~LF~R~~r~~~LT~~G~~l~~~a~~il~~~~~~ 82 (302)
T PRK09791 3 FQVKIHQIRAFVEVARQGSIRGASRMLNMSQPALSKSIQELEEGLAAQLFFRRSKGVTLTDAGESFYQHASLILEELRAA 82 (302)
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 88739999999999980999999999789879999999999999599689999998354779999999999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 210012232222223332111000000000135667542000122222222---2222222222223456-543211112
Q gi|254780282|r 81 QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLR-KPIQSSSLI 156 (299)
Q Consensus 81 ~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~-~~~~~~~l~ 156 (299)
T Consensus 83 ~~~~~~~~~~~~G~l~Ig~~~~~~~~~lp~~l~~f~~~~P~v~i~i~~~~~~~~~~~l~~g~~D~~i~~~~~~~~~~~l~ 162 (302)
T PRK09791 83 QEDIRQRQGQLAGQINIGMGASISRSLMPAVISRFHQQHPQVKVRIMEGQLVSMINELRQGELDFTINTYYQGPYDHEFT 162 (302)
T ss_pred HHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCCEE
T ss_conf 99999850676633999862688987119999999998879779999899999999998799778996567887887647
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHH
Q ss_conf 23455543321123443211122222211000112356643321100023566520223432121145324200135678
Q gi|254780282|r 157 QRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 (299)
Q Consensus 157 ~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~ 236 (299)
T Consensus 163 ~~~l~~~~~~~v~~~~hpl~~~--~~l~~l~~~~~~~~~~~~~~~----~~~~~~~~~~g~~p~~~~~~~~~~~~~~lv~ 236 (302)
T PRK09791 163 FEKLLEKQFAIFCRPGHPAIGA--RSIKQLLDYSWTMPTPHGSYY----KQLSELLDDQAQTPQVGVVCETFSACISLVA 236 (302)
T ss_pred EEEEEEEEEEEEECCCCCCCCC--CCHHHHHCCCEEEECCCCCHH----HHHHHHHHHCCCCCCEEEEECCHHHHHHHHH
T ss_conf 9997740159998389843579--899998479938757999799----9999999967999856999992999999999
Q ss_pred HHCCEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 738423311777601---998466177666766008999348778888999999999999850
Q gi|254780282|r 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 237 ~g~Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
T Consensus 237 ~g~gv~ilp~~~~~~~~~~~~lv~lpl~~~~~~~~~~lv~r~~~~~spa~~~fi~~lr~~~~~ 299 (302)
T PRK09791 237 KSDFLSILPEEMGCDPLHGQGLVMLPVSEILPKAAYYLIQRRDSRQTPLTASLITQFRRECGY 299 (302)
T ss_pred HCCEEEEECHHHHHHHHHCCCEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 789679631999987874899999979998860089999989098899999999999999887