HHsearch alignment for GI: 254780282 and conserved domain: PRK09986
>PRK09986 DNA-binding transcriptional activator XapR; Provisional.
Probab=100.00 E-value=0 Score=345.79 Aligned_cols=273 Identities=18% Similarity=0.235 Sum_probs=232.3
Q ss_pred HHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf 99982768999988289978999999999999588217976994685001343322222222221012210012232222
Q gi|254780282|r 13 VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPS 92 (299)
Q Consensus 13 ~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~~~~~~~~~~~ 92 (299)
T Consensus 1 AVae~~sft~AAe~L~isQpavS~~I~~LE~~lg~~Lf~R~~r~v~LT~~G~~l~~~a~~il~~~~~~~~~~~~~~~~~~ 80 (278)
T PRK09986 1 AVAEELHFGRAAARLNMSQPPLSIHIKELEDQLGTLLFIRHSRSVALTHAGKILMEESRRLLDNANNALARVEQIGRGEA 80 (278)
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 92255989999999888888999999999998599869999997708988999999999999999999999998635777
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22333211100000000013566754200012222222---222222222222234565432111122345554332112
Q gi|254780282|r 93 GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYA 169 (299)
Q Consensus 93 g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~~~~~~v~ 169 (299)
T Consensus 81 g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~v~i~~~~~~~~~~~l~~~~~D~a~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (278)
T PRK09986 81 GRIELGVVGTALWGRMRPAMRHFLKENPNVEVLFREKSPSMQMALLERRELDAGIWRMALEPNPGFTSLRLHESAFAVAV 160 (278)
T ss_pred CCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEECCCEEEE
T ss_conf 73368742168887642899999987898399999788699999997799758996377778877426887741637996
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCEEEEEHHHH
Q ss_conf 34432111222222110001123566433211000235665202234321211453242001356787384233117776
Q gi|254780282|r 170 APHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gia~lp~~~~ 249 (299)
T Consensus 161 ~~~hpla~~~~i~~~~l~~~~~i~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~V~~G~Giailp~~~~ 236 (278)
T PRK09986 161 PEEHLLASKSSVPLKALRNEYFVTLPSVHSDW----GFLQRVCQQAGFSPQIIREVNEPQTVLAMVSMGIGITLVADSYA 236 (278)
T ss_pred CCCCCCCCCCCCCHHHHCCCCEEEECCCCCHH----HHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCEEEEEHHHHH
T ss_conf 59873336999999998599979867998669----99999999779985179999989999999997998998417774
Q ss_pred CCC-CCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 019-984661776667660089993487788889999999999
Q gi|254780282|r 250 KDN-PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 (299)
Q Consensus 250 ~~~-~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~ 291 (299)
T Consensus 237 ~~~~~~v~~~-Pl~~~~~~~~~lv~~~~~-~~p~~~~fi~~l~ 277 (278)
T PRK09986 237 QMPWPGVVFR-PLKERIPADLYIVYHQQQ-ATPALEKLLAALT 277 (278)
T ss_pred CCCCCCEEEE-ECCCCCCEEEEEEECCCC-CCHHHHHHHHHHC
T ss_conf 2378999999-889998038999984999-9999999999865