HHsearch alignment for GI: 254780282 and conserved domain: PRK10082

>PRK10082 putative DNA-binding transcriptional regulator; Provisional.
Probab=100.00  E-value=0  Score=341.20  Aligned_cols=285  Identities=20%  Similarity=0.245  Sum_probs=222.5

Q ss_pred             CCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf             88889999999999827689999882899789999999999995882179769946850013433222222222210122
Q gi|254780282|r    2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQ   81 (299)
Q Consensus         2 ~md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~   81 (299)
T Consensus        10 nmelr~L~~F~~Vae~gSFs~AA~~L~itQpavS~~I~~LE~~LGv~Lf~R~tr~v~LT~aG~~~~~~a~~il~~le~~~   89 (303)
T PRK10082         10 NIETKWLYDFLTLEKCRNFSQAAVSRNVSQPAFSRRIRALEQAIGVELFNRQVTPLQLSEQGKIFHSQIRHLLQQLESNL   89 (303)
T ss_pred             CCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHH
T ss_conf             66299999999999809999999997898159999999999996995086799983036889999999999999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf             1001223222222333211100000000013566754200012222222222222222222234565-432111122345
Q gi|254780282|r   82 IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKL  160 (299)
Q Consensus        82 ~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~-~~~~~~l~~~~l  160 (299)
T Consensus        90 ~~l~~~~~~~~g~l~i~a~~~~~~~~Lp~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~l~~~~~~~~~l  169 (303)
T PRK10082         90 AELRGGSDYAQRKIKIAAAHSLSLGLLPSIISQMPPLFTWAIEAIDVDEAVDKLREGQSDCIFSFHDEDLLEAPFDHIRL  169 (303)
T ss_pred             HHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEE
T ss_conf             99860545675469998317769999999999744127767885048999999987997199983564334477632466


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCC
Q ss_conf             55433211234432111222222110001123566433211000235665202234321211453242001356787384
Q gi|254780282|r  161 VTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG  240 (299)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~G  240 (299)
T Consensus       170 ~~~~~~~v~~~~~---~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~v~~G~G  243 (303)
T PRK10082        170 FESQLFPVCASDE---HGEALFNLAQPHFPLLNYSRNSYMGRLINRTL---TRHSELSFSTFFVSSMSELLKQVALDGCG  243 (303)
T ss_pred             ECCCEEEEECCCC---CCCCCCCCCCCCCCEEECCCCCCHHHHHHHHH---HHCCCCCCCEEEEECHHHHHHHHHHHCCE
T ss_conf             3262699986886---68878664367986796589970879998877---53566667627997589999999996999


Q ss_pred             EEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             23311777601---998466177666766008999348778888999999999999
Q gi|254780282|r  241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK  293 (299)
Q Consensus       241 ia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~  293 (299)
T Consensus       244 Ia~lP~~~V~~el~~G~Lv~l~~d~~~~~~~~y-~~~~~~~lsP~a~~F~~~Lre~  298 (303)
T PRK10082        244 IAWLPEYAIQQEIRSGRLVVLNRDELVIPIQAY-AYRMNTRMNPVAERFWRELREL  298 (303)
T ss_pred             EEECCHHHHHHHHHCCCCEEECCCCCCCCEEEE-EEECCCCCCHHHHHHHHHHHHH
T ss_conf             998829999999878981895664565731799-9989898898999999999987