HHsearch alignment for GI: 254780282 and conserved domain: PRK10082
>PRK10082 putative DNA-binding transcriptional regulator; Provisional.
Probab=100.00 E-value=0 Score=341.20 Aligned_cols=285 Identities=20% Similarity=0.245 Sum_probs=222.5
Q ss_pred CCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf 88889999999999827689999882899789999999999995882179769946850013433222222222210122
Q gi|254780282|r 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQ 81 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~ 81 (299)
T Consensus 10 nmelr~L~~F~~Vae~gSFs~AA~~L~itQpavS~~I~~LE~~LGv~Lf~R~tr~v~LT~aG~~~~~~a~~il~~le~~~ 89 (303)
T PRK10082 10 NIETKWLYDFLTLEKCRNFSQAAVSRNVSQPAFSRRIRALEQAIGVELFNRQVTPLQLSEQGKIFHSQIRHLLQQLESNL 89 (303)
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66299999999999809999999997898159999999999996995086799983036889999999999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 1001223222222333211100000000013566754200012222222222222222222234565-432111122345
Q gi|254780282|r 82 IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKL 160 (299)
Q Consensus 82 ~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~-~~~~~~l~~~~l 160 (299)
T Consensus 90 ~~l~~~~~~~~g~l~i~a~~~~~~~~Lp~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~l~~~~~~~~~l 169 (303)
T PRK10082 90 AELRGGSDYAQRKIKIAAAHSLSLGLLPSIISQMPPLFTWAIEAIDVDEAVDKLREGQSDCIFSFHDEDLLEAPFDHIRL 169 (303)
T ss_pred HHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEE
T ss_conf 99860545675469998317769999999999744127767885048999999987997199983564334477632466
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCC
Q ss_conf 55433211234432111222222110001123566433211000235665202234321211453242001356787384
Q gi|254780282|r 161 VTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 (299)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~G 240 (299)
T Consensus 170 ~~~~~~~v~~~~~---~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~v~~G~G 243 (303)
T PRK10082 170 FESQLFPVCASDE---HGEALFNLAQPHFPLLNYSRNSYMGRLINRTL---TRHSELSFSTFFVSSMSELLKQVALDGCG 243 (303)
T ss_pred ECCCEEEEECCCC---CCCCCCCCCCCCCCEEECCCCCCHHHHHHHHH---HHCCCCCCCEEEEECHHHHHHHHHHHCCE
T ss_conf 3262699986886---68878664367986796589970879998877---53566667627997589999999996999
Q ss_pred EEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 23311777601---998466177666766008999348778888999999999999
Q gi|254780282|r 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 241 ia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
T Consensus 244 Ia~lP~~~V~~el~~G~Lv~l~~d~~~~~~~~y-~~~~~~~lsP~a~~F~~~Lre~ 298 (303)
T PRK10082 244 IAWLPEYAIQQEIRSGRLVVLNRDELVIPIQAY-AYRMNTRMNPVAERFWRELREL 298 (303)
T ss_pred EEECCHHHHHHHHHCCCCEEECCCCCCCCEEEE-EEECCCCCCHHHHHHHHHHHHH
T ss_conf 998829999999878981895664565731799-9989898898999999999987