HHsearch alignment for GI: 254780282 and conserved domain: PRK10632
>PRK10632 putative DNA-binding transcriptional regulator; Provisional.
Probab=100.00 E-value=0 Score=399.59 Aligned_cols=290 Identities=28% Similarity=0.364 Sum_probs=258.0
Q ss_pred CC-HHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf 88-89999999999827689999882899789999999999995882179769946850013433222222222210122
Q gi|254780282|r 3 FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQ 81 (299)
Q Consensus 3 md-~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~ 81 (299)
T Consensus 1 Md~L~~L~~F~~Vae~gSfs~AA~~L~~s~saVSr~I~~LE~~LG~~Lf~RttR~l~LT~~G~~~~~~~~~il~~~~~~~ 80 (309)
T PRK10632 1 MERLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIYYQGCRRMLHEVQDVH 80 (309)
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEECCCCCEECHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97678999999999809999999997959889999999999997995689789971289899999999887767888999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10012232222223332111000000000135667542000122222222222222222222345654321111223455
Q gi|254780282|r 82 IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV 161 (299)
Q Consensus 82 ~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~ 161 (299)
T Consensus 81 ~~~~~~~~~~~G~LrI~~~~~~~~~~l~~~l~~f~~~yP~i~l~l~~~~~~~dl~~~~~Diair~g~-~~~~~l~ar~L~ 159 (309)
T PRK10632 81 EQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLG 159 (309)
T ss_pred HHHHHCCCCCCEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCEEEECCCCCCCHHHCCCCCCEEECC-CCCCCEEEEEEE
T ss_conf 9998601787405884157177662306156788876898425776168746355505531034078-899883899914
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCE
Q ss_conf 54332112344321112222221100011235664332110002356652022343212114532420013567873842
Q gi|254780282|r 162 TIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 (299)
Q Consensus 162 ~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gi 241 (299)
T Consensus 160 ~~~~~l~Asp~yl~~~g~p~~p~dL~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~G~GI 236 (309)
T PRK10632 160 AMPMVVCAAKSYLAQYGTPEKPADLSSHSWLEYSVRPDNE---FELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGI 236 (309)
T ss_pred ECCCEEEECHHHHHHCCCCCCHHHHHCCCCEEECCCCCCC---EEEECCCCCEEEECCCCEEEECCHHHHHHHHHHCCCC
T ss_conf 0450587278999846999999998389847633789984---3678589977998267709999899999999919991
Q ss_pred EEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 3311777601---998466177666766008999348778888999999999999850
Q gi|254780282|r 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 242 a~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
T Consensus 237 a~lP~~~v~~~l~~G~Lv~llp~~~~~~~~~~~vy~~~~~~~~rvr~fidfl~e~f~~ 294 (309)
T PRK10632 237 AYVPLMWVIDEINRGELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINYLTDYFVR 294 (309)
T ss_pred HHCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 0186999999986899689599986999719999859986489999999999999988