HHsearch alignment for GI: 254780282 and conserved domain: PRK10837
>PRK10837 putative DNA-binding transcriptional regulator; Provisional.
Probab=100.00 E-value=0 Score=384.06 Aligned_cols=283 Identities=20% Similarity=0.222 Sum_probs=243.4
Q ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHH
Q ss_conf 98888999999999982768999988289978999999999999588217976994685001343322222222221012
Q gi|254780282|r 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETT 80 (299)
Q Consensus 1 m~md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~ 80 (299)
T Consensus 1 M~m~L~~L~~F~~va~~gsft~AA~~L~isQpavS~~I~~LE~~Lg~~Lf~R~~r~v~lT~~G~~l~~~a~~~l~~~~~~ 80 (291)
T PRK10837 1 MHITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQLGVQLFDRVGKRLVVNEHGRLLYPRALALLEQAVEI 80 (291)
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98869999999999980999999999888878999999999999699228985996524685999999999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 210012232222223332111000000000135667542000122222222---22222222222234565432111122
Q gi|254780282|r 81 QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQ 157 (299)
Q Consensus 81 ~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~~~~~~~l~~ 157 (299)
T Consensus 81 ~~~----~~~~~g~l~i~~~~~~~~~~l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~~~~D~~i~~-~~~~~~~l~~ 155 (291)
T PRK10837 81 EQL----FREDNGAIRIYASSTIGNYILPAMIARYRHDYPQLPLELSVGNSQDVIQAVLDFRVDIGLIE-GPCHSTEIIS 155 (291)
T ss_pred HHH----HCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEC-CCCCCCCEEE
T ss_conf 997----34788629999617999999999999999648993599998888999999980884166741-7889987189
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHH
Q ss_conf 34555433211234432111222222110001123566433211000235665202234321211453242001356787
Q gi|254780282|r 158 RKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 (299)
Q Consensus 158 ~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~ 237 (299)
T Consensus 156 ~~l~~~~~~~v~~p~~~l~~~-~i~~~~l~~~~~i~~~~~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~v~~ 230 (291)
T PRK10837 156 EPWLEDELVVFAAPDSPLARG-PVTLEQLAAAPWILRERGSGTREIVDYLLL----SHLPRFEMAMELGNSEAIKHAVRH 230 (291)
T ss_pred EEEECCCEEEEECCCCHHHCC-CCCHHHHHCCCEEEECCCCCHHHHHHHHHH----HCCCCCCEEEECCCHHHHHHHHHH
T ss_conf 994414189998788665379-999899807987994499868999999998----548865301312979999999995
Q ss_pred HCCEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 38423311777601---998466177666766008999348778888999999999999
Q gi|254780282|r 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 238 g~Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
T Consensus 231 G~Gia~lp~~~v~~~l~~g~L~~l~~~~~~~~~~~~lv~~k~~~ls~~~~~Fidfl~~a 289 (291)
T PRK10837 231 GLGISCLSRRVIADQLQAGTLVEVAVPLPRLMRTLWRIHHRQKHLSNALQRFLSYCQPA 289 (291)
T ss_pred CCCEEECCHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99189724999999987899799707888861279999989786599999999998620