HHsearch alignment for GI: 254780282 and conserved domain: PRK11013

>PRK11013 DNA-binding transcriptional regulator LysR; Provisional.
Probab=100.00  E-value=0  Score=386.80  Aligned_cols=289  Identities=22%  Similarity=0.279  Sum_probs=248.6

Q ss_pred             CC-CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCH
Q ss_conf             98-88899999999998276899998828997899999999999958821797699468500134332222222222101
Q gi|254780282|r    1 MS-FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET   79 (299)
Q Consensus         1 m~-md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~   79 (299)
T Consensus         1 m~~m~LrqL~~F~aVa~~gsft~AA~~L~isQpavS~~I~~LE~~LG~~Lf~R~~r~v~lT~~G~~l~~~a~~~l~~l~~   80 (309)
T PRK11013          1 MAAVSLRHIEIFHAVMTAGSLTEAARLLHTSQPTVSRELARFEQVIGLTLFERVRGRLHPTVQGLRLFEEVQRSYYGLDR   80 (309)
T ss_pred             CCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99888899999999998099999999988888899999999999979991898899611768899999999999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC--C-CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2210012232222223332111000000000135667542000122222222--2-222222222223456543211112
Q gi|254780282|r   80 TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK--D-IDISMDYADCAIRLRKPIQSSSLI  156 (299)
Q Consensus        80 ~~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~--~-~~l~~~~~Di~i~~~~~~~~~~l~  156 (299)
T Consensus        81 ~~~~~~~~~~~~~G~lri~~~~~~~~~~lp~~l~~f~~~~P~v~v~i~~~~~~~~~~~l~~~~~Dl~l~~~~-~~~~~~~  159 (309)
T PRK11013         81 IVSAAESLREFRQGQLSIACLPVFSQSLLPGLCQPFLARYPDVSLNIVPQESPLLEEWLSAQRHDLGLTETL-HTPAGTE  159 (309)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECC-CCCCCCE
T ss_conf             999999866123676565300678988665231567843898079999898599999997599778996078-8998757


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHH
Q ss_conf             23455543321123443211122222211000112356643321100023566520223432121145324200135678
Q gi|254780282|r  157 QRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV  236 (299)
Q Consensus       157 ~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~  236 (299)
T Consensus       160 ~~~l~~~~~~~v~~~~hpla~~~~i~~~dL~~~~~i~~~~~~~~r~----~~~~~~~~~g~~~~~~~e~~~~~~~~~lV~  235 (309)
T PRK11013        160 RTELLTLDEVCVLPDGHPLAAKKVLTPDDFQGENFISLSRTDSYRQ----LLDQLFAEHGVKRRMVVETHSAASVCAMVR  235 (309)
T ss_pred             EEEEEEEEEEEECCCCCCCCCCCCCCHHHHCCCCEEECCCCCCHHH----HHHHHHHHCCCCCCEEEEECCHHHHHHHHH
T ss_conf             8886420146754789800049999999973898696389994999----999999976999776999896999999999


Q ss_pred             HHCCEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             738423311777601---998466177666766008999348778888999999999999850
Q gi|254780282|r  237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD  296 (299)
Q Consensus       237 ~g~Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~  296 (299)
T Consensus       236 ~G~Gvail~~~~~~~~~~~g~~~~pl--~~~~~~~~~lv~~~~r~~s~~~~aF~~~Lr~~a~a  296 (309)
T PRK11013        236 AGLGVSIVNPLTALDYAGSGLVVRPF--SISVPFTVSLIRPLHRPSSALVDAFSEHLQAQAKA  296 (309)
T ss_pred             HCCEEEEECHHHHHHHHHCCEEEEEC--CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf             79969994699998662199099988--88996189999989997799999999999999999