HHsearch alignment for GI: 254780282 and conserved domain: PRK11013
>PRK11013 DNA-binding transcriptional regulator LysR; Provisional.
Probab=100.00 E-value=0 Score=386.80 Aligned_cols=289 Identities=22% Similarity=0.279 Sum_probs=248.6
Q ss_pred CC-CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCH
Q ss_conf 98-88899999999998276899998828997899999999999958821797699468500134332222222222101
Q gi|254780282|r 1 MS-FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET 79 (299)
Q Consensus 1 m~-md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~ 79 (299)
T Consensus 1 m~~m~LrqL~~F~aVa~~gsft~AA~~L~isQpavS~~I~~LE~~LG~~Lf~R~~r~v~lT~~G~~l~~~a~~~l~~l~~ 80 (309)
T PRK11013 1 MAAVSLRHIEIFHAVMTAGSLTEAARLLHTSQPTVSRELARFEQVIGLTLFERVRGRLHPTVQGLRLFEEVQRSYYGLDR 80 (309)
T ss_pred CCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99888899999999998099999999988888899999999999979991898899611768899999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC--C-CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2210012232222223332111000000000135667542000122222222--2-222222222223456543211112
Q gi|254780282|r 80 TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK--D-IDISMDYADCAIRLRKPIQSSSLI 156 (299)
Q Consensus 80 ~~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~--~-~~l~~~~~Di~i~~~~~~~~~~l~ 156 (299)
T Consensus 81 ~~~~~~~~~~~~~G~lri~~~~~~~~~~lp~~l~~f~~~~P~v~v~i~~~~~~~~~~~l~~~~~Dl~l~~~~-~~~~~~~ 159 (309)
T PRK11013 81 IVSAAESLREFRQGQLSIACLPVFSQSLLPGLCQPFLARYPDVSLNIVPQESPLLEEWLSAQRHDLGLTETL-HTPAGTE 159 (309)
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECC-CCCCCCE
T ss_conf 999999866123676565300678988665231567843898079999898599999997599778996078-8998757
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHH
Q ss_conf 23455543321123443211122222211000112356643321100023566520223432121145324200135678
Q gi|254780282|r 157 QRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 (299)
Q Consensus 157 ~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~ 236 (299)
T Consensus 160 ~~~l~~~~~~~v~~~~hpla~~~~i~~~dL~~~~~i~~~~~~~~r~----~~~~~~~~~g~~~~~~~e~~~~~~~~~lV~ 235 (309)
T PRK11013 160 RTELLTLDEVCVLPDGHPLAAKKVLTPDDFQGENFISLSRTDSYRQ----LLDQLFAEHGVKRRMVVETHSAASVCAMVR 235 (309)
T ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCHHHHCCCCEEECCCCCCHHH----HHHHHHHHCCCCCCEEEEECCHHHHHHHHH
T ss_conf 8886420146754789800049999999973898696389994999----999999976999776999896999999999
Q ss_pred HHCCEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 738423311777601---998466177666766008999348778888999999999999850
Q gi|254780282|r 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 237 ~g~Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
T Consensus 236 ~G~Gvail~~~~~~~~~~~g~~~~pl--~~~~~~~~~lv~~~~r~~s~~~~aF~~~Lr~~a~a 296 (309)
T PRK11013 236 AGLGVSIVNPLTALDYAGSGLVVRPF--SISVPFTVSLIRPLHRPSSALVDAFSEHLQAQAKA 296 (309)
T ss_pred HCCEEEEECHHHHHHHHHCCEEEEEC--CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 79969994699998662199099988--88996189999989997799999999999999999