HHsearch alignment for GI: 254780282 and conserved domain: PRK11062

>PRK11062 nhaR transcriptional activator NhaR; Provisional.
Probab=100.00  E-value=0  Score=306.88  Aligned_cols=280  Identities=19%  Similarity=0.196  Sum_probs=231.0

Q ss_pred             CC-CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCH
Q ss_conf             98-88899999999998276899998828997899999999999958821797699468500134332222222222101
Q gi|254780282|r    1 MS-FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET   79 (299)
Q Consensus         1 m~-md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~   79 (299)
T Consensus         1 m~~ln~~~L~~F~~va~~gs~~~Aa~~L~~tq~~vS~qi~~LE~~lg~~Lf~R~~r~~~lT~~G~~~~~~a~~i~~l~~e   80 (296)
T PRK11062          1 MSHLNYNHLYYFWMVYKEGSVVGAAEALFLTPQTITGQIKALEERLQGKLFKRKGRGLEPTELGELVFRYADKMFTLSYE   80 (296)
T ss_pred             CCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCEEECHHHHHHHHHHHHHHHHHHH
T ss_conf             99888899999999998099999999968981799999999999959910998899828858999999999999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCC--CCCCCC
Q ss_conf             2210012232222223332111000000000135667542000122222222---22222222222234565--432111
Q gi|254780282|r   80 TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRK--PIQSSS  154 (299)
Q Consensus        80 ~~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~--~~~~~~  154 (299)
T Consensus        81 l~~~~~~-~~~~~~~lrvGi~~tl~k~~~~~lL~~~~~~~~~v~l~~~eg~~~~LL~~L~~~~LDlvLsd~p~~~~~~~~  159 (296)
T PRK11062         81 MLDIVNY-RKESNLLFDVGVADALSKRLVSRVLLAAVPEDESIHLRCFESTHEMLLEQLSQHKLDMILSDCPVDSTQQEG  159 (296)
T ss_pred             HHHHHHH-CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEECCCCCCCCCCC
T ss_conf             9999850-457770599985246469899999999972289779999349879999999838987576068887556886


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHH
Q ss_conf             12234555433211234432111222222110001123566433211000235665202234321211453242001356
Q gi|254780282|r  155 LIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY  234 (299)
Q Consensus       155 l~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  234 (299)
T Consensus       160 ~~s~~L~~~~v~~~~~~~l~~~----~fP~~L~~~plllp~~~S~lR~~ld~wf~~~----gI~P~Iv~E~dD~allk~~  231 (296)
T PRK11062        160 LFSKKLGECGVSFFCTNPLPEK----PFPACLEERRLLIPGRRTMLGRKLLNWFNSQ----GLNVEILGEFDDAALMKAF  231 (296)
T ss_pred             EEEEECCCCCEEEEECCCCCCC----CCHHHHCCCCCCCCCCCCHHHHHHHHHHHHC----CCCCEEEEEECCHHHHHHH
T ss_conf             3898746684689845744458----7957755798402799875899999999968----9984499985989999999


Q ss_pred             HHHHCCEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             78738423311777601---998466177666766008999348778888999999999
Q gi|254780282|r  235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI  290 (299)
Q Consensus       235 v~~g~Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l  290 (299)
T Consensus       232 a~~G~Gva~~P~~v~~d~~~~~~l~~~-g~~~~v~e~fyAIt~~R~~~hP~v~~i~~~~  289 (296)
T PRK11062        232 GAYHDAIFVAPSIYAQDIYADHSVVEI-GRVENVKEEYHVIFAERMIQHPAVQRICNTD  289 (296)
T ss_pred             HHHCCCEEECCHHHHHHHHHCCCCEEE-CCCCCCEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf             981998898789999999857991894-4578842679998504468986999999999