HHsearch alignment for GI: 254780282 and conserved domain: PRK11062
>PRK11062 nhaR transcriptional activator NhaR; Provisional.
Probab=100.00 E-value=0 Score=306.88 Aligned_cols=280 Identities=19% Similarity=0.196 Sum_probs=231.0
Q ss_pred CC-CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCH
Q ss_conf 98-88899999999998276899998828997899999999999958821797699468500134332222222222101
Q gi|254780282|r 1 MS-FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET 79 (299)
Q Consensus 1 m~-md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~ 79 (299)
T Consensus 1 m~~ln~~~L~~F~~va~~gs~~~Aa~~L~~tq~~vS~qi~~LE~~lg~~Lf~R~~r~~~lT~~G~~~~~~a~~i~~l~~e 80 (296)
T PRK11062 1 MSHLNYNHLYYFWMVYKEGSVVGAAEALFLTPQTITGQIKALEERLQGKLFKRKGRGLEPTELGELVFRYADKMFTLSYE 80 (296)
T ss_pred CCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCEEECHHHHHHHHHHHHHHHHHHH
T ss_conf 99888899999999998099999999968981799999999999959910998899828858999999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCC--CCCCCC
Q ss_conf 2210012232222223332111000000000135667542000122222222---22222222222234565--432111
Q gi|254780282|r 80 TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRK--PIQSSS 154 (299)
Q Consensus 80 ~~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~--~~~~~~ 154 (299)
T Consensus 81 l~~~~~~-~~~~~~~lrvGi~~tl~k~~~~~lL~~~~~~~~~v~l~~~eg~~~~LL~~L~~~~LDlvLsd~p~~~~~~~~ 159 (296)
T PRK11062 81 MLDIVNY-RKESNLLFDVGVADALSKRLVSRVLLAAVPEDESIHLRCFESTHEMLLEQLSQHKLDMILSDCPVDSTQQEG 159 (296)
T ss_pred HHHHHHH-CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEECCCCCCCCCCC
T ss_conf 9999850-457770599985246469899999999972289779999349879999999838987576068887556886
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHH
Q ss_conf 12234555433211234432111222222110001123566433211000235665202234321211453242001356
Q gi|254780282|r 155 LIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 (299)
Q Consensus 155 l~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 234 (299)
T Consensus 160 ~~s~~L~~~~v~~~~~~~l~~~----~fP~~L~~~plllp~~~S~lR~~ld~wf~~~----gI~P~Iv~E~dD~allk~~ 231 (296)
T PRK11062 160 LFSKKLGECGVSFFCTNPLPEK----PFPACLEERRLLIPGRRTMLGRKLLNWFNSQ----GLNVEILGEFDDAALMKAF 231 (296)
T ss_pred EEEEECCCCCEEEEECCCCCCC----CCHHHHCCCCCCCCCCCCHHHHHHHHHHHHC----CCCCEEEEEECCHHHHHHH
T ss_conf 3898746684689845744458----7957755798402799875899999999968----9984499985989999999
Q ss_pred HHHHCCEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 78738423311777601---998466177666766008999348778888999999999
Q gi|254780282|r 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 (299)
Q Consensus 235 v~~g~Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l 290 (299)
T Consensus 232 a~~G~Gva~~P~~v~~d~~~~~~l~~~-g~~~~v~e~fyAIt~~R~~~hP~v~~i~~~~ 289 (296)
T PRK11062 232 GAYHDAIFVAPSIYAQDIYADHSVVEI-GRVENVKEEYHVIFAERMIQHPAVQRICNTD 289 (296)
T ss_pred HHHCCCEEECCHHHHHHHHHCCCCEEE-CCCCCCEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 981998898789999999857991894-4578842679998504468986999999999