HHsearch alignment for GI: 254780282 and conserved domain: PRK11139

>PRK11139 DNA-binding transcriptional activator GcvA; Provisional.
Probab=100.00  E-value=0  Score=387.80  Aligned_cols=286  Identities=25%  Similarity=0.325  Sum_probs=251.4

Q ss_pred             C-CHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf             8-889999999999827689999882899789999999999995882179769946850013433222222222210122
Q gi|254780282|r    3 F-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQ   81 (299)
Q Consensus         3 m-d~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~   81 (299)
T Consensus         5 ~~~L~~L~~F~aVa~~gS~s~AA~~L~~sqsaVS~~I~~LE~~lG~~Lf~R~~r~~~lT~~G~~l~~~a~~il~~~~~~~   84 (295)
T PRK11139          5 LPPLNALRAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRRNRSLLLTEEGQRYFLDIREAFDQLAEAT   84 (295)
T ss_pred             CCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEECCCCEEECHHHHHHHHHHHHHHHHHHHHH
T ss_conf             94979999999999839999999998869889999999999985984489889953680999999999999999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             10012232222223332111000000000135667542000122222222222222222222345654321111223455
Q gi|254780282|r   82 IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV  161 (299)
Q Consensus        82 ~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~  161 (299)
T Consensus        85 ~~~~~--~~~~g~l~I~~~~~~~~~~l~p~l~~f~~~~P~i~v~l~~~~~~~~l~~~~~Diai~~~~-~~~~~l~~~~l~  161 (295)
T PRK11139         85 RKLRA--RSAKGALTVSLLPSFAIKWLVPRLSSFNEAHPDIDVRLQAVDRLEDFLRDDVDVAIRYGR-GNWPGLRVEKLL  161 (295)
T ss_pred             HHHHH--HCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHCCCCEEEEEEEC-CCCCCEEEEEEE
T ss_conf             99753--077873999996322777633466666610885899999624166663347438999723-776762799940


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCE
Q ss_conf             54332112344321112222221100011235664332110002356652022343212114532420013567873842
Q gi|254780282|r  162 TIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI  241 (299)
Q Consensus       162 ~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gi  241 (299)
T Consensus       162 ~~~~~~vasp~~~~~~~~~~~~~dL~~~~li~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~G~Gi  236 (295)
T PRK11139        162 DEYLFPVCSPALLNGGKPLKTPEDLARHTLLHDDSR----EDWRAWFRAAG-LNDINVQQGPIFSHSSMALQAAIHGQGV  236 (295)
T ss_pred             CCEEEEEECHHHHHHCCCCCCHHHHHCCCEEEECCC----CHHHHHHHHCC-CCCCCCCCCEEECCHHHHHHHHHHCCEE
T ss_conf             446999988799964799999999818987963696----21588998569-8654678752887899999999959929


Q ss_pred             EEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             3311777601---998466177666766008999348778888999999999999850
Q gi|254780282|r  242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD  296 (299)
Q Consensus       242 a~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~  296 (299)
T Consensus       237 a~lp~~~v~~~l~~G~Lv~~l~~~~~~~~~~~lv~~~~~~~~p~v~~F~~~L~~~~~~  294 (295)
T PRK11139        237 ALGRRVLAQPEIEAGRLVCPFDIVLPSKNAFYLVCPPSQAELPKVAAFRQWLLAEAAQ  294 (295)
T ss_pred             EECCHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             9777999999987899799898666788759999808987898999999999998536