HHsearch alignment for GI: 254780282 and conserved domain: PRK11151

>PRK11151 DNA-binding transcriptional regulator OxyR; Provisional.
Probab=100.00  E-value=0  Score=380.99  Aligned_cols=288  Identities=20%  Similarity=0.236  Sum_probs=248.6

Q ss_pred             CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf             88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r    3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI   82 (299)
Q Consensus         3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~   82 (299)
T Consensus         1 M~lrqL~~F~aVae~gSfs~AA~~L~isQpavS~~I~~LE~~LG~~LF~R~~r~v~LT~aG~~l~~~a~~il~~~~~~~~   80 (305)
T PRK11151          1 MNIRDLEYLVALAEHKHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQAGLLLVDQAKTVLREVKVLKE   80 (305)
T ss_pred             CCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEECCCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             96799999999997299999999978987899999999999979865898599046888699999999999999999999


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--C-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             001223222222333211100000000013566754200012222222--2-2222222222223456543211112234
Q gi|254780282|r   83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN--K-DIDISMDYADCAIRLRKPIQSSSLIQRK  159 (299)
Q Consensus        83 ~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~--~-~~~l~~~~~Di~i~~~~~~~~~~l~~~~  159 (299)
T Consensus        81 ~~~~~~~~~~G~lrig~~~~~~~~llp~~l~~f~~~~P~v~i~l~~~~~~~l~~~l~~g~~D~~i~~-~~~~~~~~~~~~  159 (305)
T PRK11151         81 MASQQGETMSGPLHIGLIPTVGPYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDCAILA-LVKESEAFIEVP  159 (305)
T ss_pred             HHHHHCCCCCCEEEEEEHHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCEEEEE-CCCCCCCCEEEE
T ss_conf             9886317876414311022233323827799986238983799998875777878657885379984-588998726876


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHC
Q ss_conf             55543321123443211122222211000112356643321100023566520223432121145324200135678738
Q gi|254780282|r  160 LVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS  239 (299)
Q Consensus       160 l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~  239 (299)
T Consensus       160 l~~e~l~lv~~~~hpla~~~~i~l~~L~~~~~i~~~~~~~~r~~~~~~~~----~~g~~~~~~~~~~~~~~i~~lV~~G~  235 (305)
T PRK11151        160 LFDEPMLLAVYEDHPWANRDRVPMSDLAGEKLLMLEDGHCLRDQAMGFCF----EAGADEDTHFRATSLETLRNMVAAGS  235 (305)
T ss_pred             ECCCCEEEEEECCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHH----HCCCCCCEEEEEECHHHHHHHHHHCC
T ss_conf             20462799995898433699989999769988996899859999999999----77999873899944799999999299


Q ss_pred             CEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             423311777601---99846617766676600899934877888899999999999985
Q gi|254780282|r  240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR  295 (299)
Q Consensus       240 Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r  295 (299)
T Consensus       236 Gv~ilp~~~v~~~~~~~~l~~~pl~~~~~~r~i~lv~r~~~~ls~~~~~~~e~ir~~l~  294 (305)
T PRK11151        236 GITLLPALAVPNERKRDGVCYLPCIKPEPRRTIGLVYRPGSPLRSRYEQLAEAIRARMD  294 (305)
T ss_pred             CEEECCHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             68983599986221269889998889997369999998909878999999999999888