HHsearch alignment for GI: 254780282 and conserved domain: PRK11151
>PRK11151 DNA-binding transcriptional regulator OxyR; Provisional.
Probab=100.00 E-value=0 Score=380.99 Aligned_cols=288 Identities=20% Similarity=0.236 Sum_probs=248.6
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~ 82 (299)
T Consensus 1 M~lrqL~~F~aVae~gSfs~AA~~L~isQpavS~~I~~LE~~LG~~LF~R~~r~v~LT~aG~~l~~~a~~il~~~~~~~~ 80 (305)
T PRK11151 1 MNIRDLEYLVALAEHKHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQAGLLLVDQAKTVLREVKVLKE 80 (305)
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEECCCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96799999999997299999999978987899999999999979865898599046888699999999999999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--C-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 001223222222333211100000000013566754200012222222--2-2222222222223456543211112234
Q gi|254780282|r 83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN--K-DIDISMDYADCAIRLRKPIQSSSLIQRK 159 (299)
Q Consensus 83 ~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~--~-~~~l~~~~~Di~i~~~~~~~~~~l~~~~ 159 (299)
T Consensus 81 ~~~~~~~~~~G~lrig~~~~~~~~llp~~l~~f~~~~P~v~i~l~~~~~~~l~~~l~~g~~D~~i~~-~~~~~~~~~~~~ 159 (305)
T PRK11151 81 MASQQGETMSGPLHIGLIPTVGPYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDCAILA-LVKESEAFIEVP 159 (305)
T ss_pred HHHHHCCCCCCEEEEEEHHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCEEEEE-CCCCCCCCEEEE
T ss_conf 9886317876414311022233323827799986238983799998875777878657885379984-588998726876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHC
Q ss_conf 55543321123443211122222211000112356643321100023566520223432121145324200135678738
Q gi|254780282|r 160 LVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 (299)
Q Consensus 160 l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~ 239 (299)
T Consensus 160 l~~e~l~lv~~~~hpla~~~~i~l~~L~~~~~i~~~~~~~~r~~~~~~~~----~~g~~~~~~~~~~~~~~i~~lV~~G~ 235 (305)
T PRK11151 160 LFDEPMLLAVYEDHPWANRDRVPMSDLAGEKLLMLEDGHCLRDQAMGFCF----EAGADEDTHFRATSLETLRNMVAAGS 235 (305)
T ss_pred ECCCCEEEEEECCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHH----HCCCCCCEEEEEECHHHHHHHHHHCC
T ss_conf 20462799995898433699989999769988996899859999999999----77999873899944799999999299
Q ss_pred CEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 423311777601---99846617766676600899934877888899999999999985
Q gi|254780282|r 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 (299)
Q Consensus 240 Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r 295 (299)
T Consensus 236 Gv~ilp~~~v~~~~~~~~l~~~pl~~~~~~r~i~lv~r~~~~ls~~~~~~~e~ir~~l~ 294 (305)
T PRK11151 236 GITLLPALAVPNERKRDGVCYLPCIKPEPRRTIGLVYRPGSPLRSRYEQLAEAIRARMD 294 (305)
T ss_pred CEEECCHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 68983599986221269889998889997369999998909878999999999999888