HHsearch alignment for GI: 254780282 and conserved domain: PRK11482
>PRK11482 putative DNA-binding transcriptional regulator; Provisional.
Probab=100.00 E-value=6.3e-39 Score=244.90 Aligned_cols=260 Identities=17% Similarity=0.092 Sum_probs=207.0
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 82899789999999999995882179769946850013433222222222210122100122322222233321110000
Q gi|254780282|r 26 QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ 105 (299)
Q Consensus 26 ~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~~~~~~~~~~~g~i~I~~~~~~~~ 105 (299)
T Consensus 1 ~L~lSQsAvS~aL~rLR~~~~DpLFvR~g~g~~PT~~A~~L~~~i~~~l~~i~~~l~~~~~~~--~~~~~~i~~~~~~~~ 78 (266)
T PRK11482 1 ILNLTPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAYATHLHEYISQGLESILGALDITGSYD--KQRTITIATTPSVGA 78 (266)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCEEEEEEECHHHHH
T ss_conf 987687999999999999869950786499726648999999999999999998741568888--652599997588999
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00000135667542000122222-22222222222222234565432111122345554332112344321112222221
Q gi|254780282|r 106 NLLQGNLKEFLLLYPDIQIQLIL-DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 (299)
Q Consensus 106 ~~l~~~l~~f~~~~P~i~i~i~~-~~~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 184 (299)
T Consensus 79 ~~lp~l~~~l~~~aP~i~l~~~~~~~~~~~L~~~~~Dl~i~~~~-~~~~~~~~~~L~~d~~v~v~~~~HP~~~-~~~t~e 156 (266)
T PRK11482 79 LVLPVIYQAIKPHYPQLLLRNIPISDAENQLSQFQTDLIIDTHS-CTNRTIQHHVLFTDNMVLVCRQGHPCLS-LEDDEE 156 (266)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCEEEECCC-CCCCCEEEEEEEECCEEEEEECCCCCCC-CCCCHH
T ss_conf 99999999999779986999568657889985699888985688-8987638999994288999989685569-999999
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCEEEEEHHHHCC---CCCEEEEC-C
Q ss_conf 1000112356643321100023566520223432121145324200135678738423311777601---99846617-7
Q gi|254780282|r 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM-E 260 (299)
Q Consensus 185 dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gia~lp~~~~~~---~~~lv~i~-~ 260 (299)
T Consensus 157 ~~~~~~Hv~~~~~~~~~~----~~~~~l~~~~~~R~i~~~~~~~~~~~~lv~~tdli~~~P~~la~~~~~~~~L~~lp~p 232 (266)
T PRK11482 157 TLDNAAHTLLLPEGQNFS----GLRQRLQEMFPDRQISFSSYNILTIAALIASSDMLGLMPSRFYNLFSRCWPLEKLPFP 232 (266)
T ss_pred HHHCCCCEEEECCCCCCC----HHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCEEEEHHHHHHHHHHHHCCCEEECCC
T ss_conf 996299999976999877----9999999749998599997999999999984999985899999998876798794689
Q ss_pred CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 666766008999348778888999999999999
Q gi|254780282|r 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 261 ~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
T Consensus 233 p~~~~~~~~~l~Wh~r~~~DP~~~wlr~~i~e~ 265 (266)
T PRK11482 233 SLNEEQIDFSLHYNKLSLRDPVLENVIDVIREA 265 (266)
T ss_pred CCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 988996469999885542676899999999986