HHsearch alignment for GI: 254780282 and conserved domain: TIGR01884

>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein; InterPro: IPR010163 Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity..

Probab=95.90  E-value=0.033  Score=32.13  Aligned_cols=61  Identities=26%  Similarity=0.359  Sum_probs=48.2

Q ss_pred             CCHHHHHHHHHHHHH-C--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEE-CCCCEEEEECC
Q ss_conf             888999999999982-7--6899998828997899999999999958821797-69946850013
Q gi|254780282|r    3 FDWDKLRVFYVVARS-G--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTEQG   63 (299)
Q Consensus         3 md~~~L~~f~~v~~~-g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R-~~~~~~lT~~G   63 (299)
T Consensus       167 ~s~~~~~vL~~L~~~~Ge~~v~~iA~~lg~s~~T~~~~~~~Lek~gLv~~~~~~k~~~~~~t~Lg  231 (231)
T TIGR01884       167 LSREELKVLEALKAEKGEKSVKNIAKKLGKSLSTISRHLAELEKKGLVESKGRGKGKRYSVTKLG  231 (231)
T ss_pred             CCHHHHHHHHHHHCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCEECCCC
T ss_conf             88999999999850788052877998857888799999998874475456304678720001369