HHsearch alignment for GI: 254780282 and conserved domain: TIGR02036

>TIGR02036 dsdC D-serine deaminase transcriptional activator; InterPro: IPR011781 This family, part of the LysR family of transcriptional regulators, activates transcription of the gene for D-serine deaminase, dsdA. Trusted members of this family so far are found adjacent to dsdA and only in Gammaproteobacteria, including Escherichia coli, Vibrio cholerae, and Colwellia psychrerythraea..
Probab=100.00  E-value=0  Score=292.53  Aligned_cols=288  Identities=23%  Similarity=0.327  Sum_probs=244.0

Q ss_pred             CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf             88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r    3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI   82 (299)
Q Consensus         3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~   82 (299)
T Consensus         8 fQLSKmHTFEVAARH~SFsLAAeELSltPSAiSHRIN~LEeElGI~LF~RsHRKveLT~EG~RiY~alkssl~~LNQEIl   87 (302)
T TIGR02036         8 FQLSKMHTFEVAARHQSFSLAAEELSLTPSAISHRINKLEEELGIKLFKRSHRKVELTKEGKRIYIALKSSLDSLNQEIL   87 (302)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf             32335667888875133778887531673457775443356521442033565256446774046677876543141210


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00122322222233321110000000001356675420001222222222222222222223456543211112234555
Q gi|254780282|r   83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT  162 (299)
Q Consensus        83 ~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~  162 (299)
T Consensus        88 diK--n~E~SG~LT~YSRPSfAQCWLVPri~~F~~~YPsIsL~~LTGNeNinfqg~GIDvAIYF-Dd~~p~kL~c~~im~  164 (302)
T TIGR02036        88 DIK--NQELSGELTVYSRPSFAQCWLVPRIADFKKRYPSISLKVLTGNENINFQGAGIDVAIYF-DDKQPAKLSCKEIMD  164 (302)
T ss_pred             HHC--CCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEECCCCCCEEEEEE-CCCCCCCCCHHHHCC
T ss_conf             002--67512102002255333443323232120038712211001535320135750378870-788874212012124


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHC
Q ss_conf             43321123443211122222211000112356643---321100023566520223432121145324200135678738
Q gi|254780282|r  163 IHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS  239 (299)
Q Consensus       163 ~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~  239 (299)
T Consensus       165 E~I~PVCsPEYAq~~~L~~~~~NL~~cTLLHDnQAW~ydS~tDEW~~WAn~~~~n-~L~~ss~IgFDRSDLAVIAA~Nna  243 (302)
T TIGR02036       165 ETIVPVCSPEYAQKYALTSKVDNLSQCTLLHDNQAWSYDSDTDEWKSWANAYAVN-NLESSSSIGFDRSDLAVIAAMNNA  243 (302)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf             3313434813555553654456765211100012037888854789888632132-113222367654479999998504


Q ss_pred             CEEEEEHHHHCC---CCCEEEECCCC-CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             423311777601---99846617766-676600899934877888899999999999985
Q gi|254780282|r  240 GIALLPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR  295 (299)
Q Consensus       240 Gia~lp~~~~~~---~~~lv~i~~~~-~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r  295 (299)
T Consensus       244 GvAMGR~slv~~rl~sGEL~~Pf~d~~v~C~QrYYvaTLPn~~n~-KielFI~WL~~qVk  302 (302)
T TIGR02036       244 GVAMGRKSLVKKRLASGELVKPFIDKKVLCKQRYYVATLPNKKNT-KIELFIEWLKEQVK  302 (302)
T ss_pred             CHHCCHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEECCCCCCCC-HHHHHHHHHHHHCC
T ss_conf             411023789886521675326778865562563067408888770-57888799996349