HHsearch alignment for GI: 254780282 and conserved domain: TIGR02036
>TIGR02036 dsdC D-serine deaminase transcriptional activator; InterPro: IPR011781 This family, part of the LysR family of transcriptional regulators, activates transcription of the gene for D-serine deaminase, dsdA. Trusted members of this family so far are found adjacent to dsdA and only in Gammaproteobacteria, including Escherichia coli, Vibrio cholerae, and Colwellia psychrerythraea..
Probab=100.00 E-value=0 Score=292.53 Aligned_cols=288 Identities=23% Similarity=0.327 Sum_probs=244.0
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~ 82 (299)
T Consensus 8 fQLSKmHTFEVAARH~SFsLAAeELSltPSAiSHRIN~LEeElGI~LF~RsHRKveLT~EG~RiY~alkssl~~LNQEIl 87 (302)
T TIGR02036 8 FQLSKMHTFEVAARHQSFSLAAEELSLTPSAISHRINKLEEELGIKLFKRSHRKVELTKEGKRIYIALKSSLDSLNQEIL 87 (302)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 32335667888875133778887531673457775443356521442033565256446774046677876543141210
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00122322222233321110000000001356675420001222222222222222222223456543211112234555
Q gi|254780282|r 83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT 162 (299)
Q Consensus 83 ~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~ 162 (299)
T Consensus 88 diK--n~E~SG~LT~YSRPSfAQCWLVPri~~F~~~YPsIsL~~LTGNeNinfqg~GIDvAIYF-Dd~~p~kL~c~~im~ 164 (302)
T TIGR02036 88 DIK--NQELSGELTVYSRPSFAQCWLVPRIADFKKRYPSISLKVLTGNENINFQGAGIDVAIYF-DDKQPAKLSCKEIMD 164 (302)
T ss_pred HHC--CCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEECCCCCCEEEEEE-CCCCCCCCCHHHHCC
T ss_conf 002--67512102002255333443323232120038712211001535320135750378870-788874212012124
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHC
Q ss_conf 43321123443211122222211000112356643---321100023566520223432121145324200135678738
Q gi|254780282|r 163 IHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 (299)
Q Consensus 163 ~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~ 239 (299)
T Consensus 165 E~I~PVCsPEYAq~~~L~~~~~NL~~cTLLHDnQAW~ydS~tDEW~~WAn~~~~n-~L~~ss~IgFDRSDLAVIAA~Nna 243 (302)
T TIGR02036 165 ETIVPVCSPEYAQKYALTSKVDNLSQCTLLHDNQAWSYDSDTDEWKSWANAYAVN-NLESSSSIGFDRSDLAVIAAMNNA 243 (302)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 3313434813555553654456765211100012037888854789888632132-113222367654479999998504
Q ss_pred CEEEEEHHHHCC---CCCEEEECCCC-CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 423311777601---99846617766-676600899934877888899999999999985
Q gi|254780282|r 240 GIALLPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 (299)
Q Consensus 240 Gia~lp~~~~~~---~~~lv~i~~~~-~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r 295 (299)
T Consensus 244 GvAMGR~slv~~rl~sGEL~~Pf~d~~v~C~QrYYvaTLPn~~n~-KielFI~WL~~qVk 302 (302)
T TIGR02036 244 GVAMGRKSLVKKRLASGELVKPFIDKKVLCKQRYYVATLPNKKNT-KIELFIEWLKEQVK 302 (302)
T ss_pred CHHCCHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEECCCCCCCC-HHHHHHHHHHHHCC
T ss_conf 411023789886521675326778865562563067408888770-57888799996349