HHsearch alignment for GI: 254780282 and conserved domain: TIGR02424

>TIGR02424 TF_pcaQ pca operon transcription factor PcaQ; InterPro: IPR012787 Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate . Members occur only in proteobacteria.; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0019619 protocatechuate catabolic process, 0045941 positive regulation of transcription.
Probab=100.00  E-value=0  Score=297.14  Aligned_cols=292  Identities=18%  Similarity=0.194  Sum_probs=254.2

Q ss_pred             CCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf             88889999999999827689999882899789999999999995882179769946850013433222222222210122
Q gi|254780282|r    2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQ   81 (299)
Q Consensus         2 ~md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~   81 (299)
T Consensus         2 r~KfRHL~~FvEVAR~~Sv~rAae~L~~tQPAvsKTlrELE~~LG~~L~eR~~~GiRlT~~G~~Fl~hAg~Sl~ALR~Gv   81 (300)
T TIGR02424         2 RIKFRHLECFVEVARQGSVKRAAEALHITQPAVSKTLRELEEILGTPLLERDRRGIRLTRYGEVFLRHAGASLAALRQGV   81 (300)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             63188899999999988999999862488107889999999872974511478635637221154666658999998658


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf             10012232222223332111000000000135667542000122222222---2222222222223-4565432111122
Q gi|254780282|r   82 IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAI-RLRKPIQSSSLIQ  157 (299)
Q Consensus        82 ~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i-~~~~~~~~~~l~~  157 (299)
T Consensus        82 ~~l~~lg~~~~~~~~~GaLPTVaA~L~P~~~~~f~~~~p~~~~~i~tG~n~~Lld~LR~G~LDlVvGRL~ape~MqGl~F  161 (300)
T TIGR02424        82 ASLSQLGEGEGPTVRVGALPTVAARLMPEVVKRFLAEAPRLRLRIVTGENAYLLDQLRVGELDLVVGRLGAPETMQGLSF  161 (300)
T ss_pred             HHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCCEEEEECCCCCHHHCCCCC
T ss_conf             99998421489648972646689999999999999616895589987785787987228980277606888321158642


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHH
Q ss_conf             34555433211234432111222222110001123566433211000235665202234321211453242001356787
Q gi|254780282|r  158 RKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL  237 (299)
Q Consensus       158 ~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~  237 (299)
T Consensus       162 e~LY~E~v~~VVragHPL~~~p~~~~~~L~~yPvl~P~~g~~IR~~~erll~a~G~~~l~---~r~EtvS~~fgR~y~~~  238 (300)
T TIGR02424       162 EHLYNERVVFVVRAGHPLLAAPSLSVASLADYPVLLPPEGSIIRPLVERLLIACGIPALP---QRIETVSDSFGRRYVRE  238 (300)
T ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC---CHHHHHHHHHHHHHHHH
T ss_conf             514477337887085785578877778873388104862226799999999874765566---01344315788777645


Q ss_pred             HCCEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             38423311777601---998466177666766008999348778888999999999999850
Q gi|254780282|r  238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD  296 (299)
Q Consensus       238 g~Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~  296 (299)
T Consensus       239 sdA~WiiS~gvv~~dl~~G~L~~Lp~~~~~t~GPVGL~~R~d~~~s~aaq~f~~alr~~~~~  300 (300)
T TIGR02424       239 SDAVWIISEGVVAKDLADGTLVELPVDTRETAGPVGLCTRPDEQLSRAAQLFVDALRSAAEA  300 (300)
T ss_pred             CCCEEECCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             47257726678988752892776465757788770215488877898999999999998519