HHsearch alignment for GI: 254780282 and conserved domain: TIGR02424
>TIGR02424 TF_pcaQ pca operon transcription factor PcaQ; InterPro: IPR012787 Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate . Members occur only in proteobacteria.; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0019619 protocatechuate catabolic process, 0045941 positive regulation of transcription.
Probab=100.00 E-value=0 Score=297.14 Aligned_cols=292 Identities=18% Similarity=0.194 Sum_probs=254.2
Q ss_pred CCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf 88889999999999827689999882899789999999999995882179769946850013433222222222210122
Q gi|254780282|r 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQ 81 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~ 81 (299)
T Consensus 2 r~KfRHL~~FvEVAR~~Sv~rAae~L~~tQPAvsKTlrELE~~LG~~L~eR~~~GiRlT~~G~~Fl~hAg~Sl~ALR~Gv 81 (300)
T TIGR02424 2 RIKFRHLECFVEVARQGSVKRAAEALHITQPAVSKTLRELEEILGTPLLERDRRGIRLTRYGEVFLRHAGASLAALRQGV 81 (300)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 63188899999999988999999862488107889999999872974511478635637221154666658999998658
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 10012232222223332111000000000135667542000122222222---2222222222223-4565432111122
Q gi|254780282|r 82 IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAI-RLRKPIQSSSLIQ 157 (299)
Q Consensus 82 ~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i-~~~~~~~~~~l~~ 157 (299)
T Consensus 82 ~~l~~lg~~~~~~~~~GaLPTVaA~L~P~~~~~f~~~~p~~~~~i~tG~n~~Lld~LR~G~LDlVvGRL~ape~MqGl~F 161 (300)
T TIGR02424 82 ASLSQLGEGEGPTVRVGALPTVAARLMPEVVKRFLAEAPRLRLRIVTGENAYLLDQLRVGELDLVVGRLGAPETMQGLSF 161 (300)
T ss_pred HHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCCEEEEECCCCCHHHCCCCC
T ss_conf 99998421489648972646689999999999999616895589987785787987228980277606888321158642
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHH
Q ss_conf 34555433211234432111222222110001123566433211000235665202234321211453242001356787
Q gi|254780282|r 158 RKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 (299)
Q Consensus 158 ~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~ 237 (299)
T Consensus 162 e~LY~E~v~~VVragHPL~~~p~~~~~~L~~yPvl~P~~g~~IR~~~erll~a~G~~~l~---~r~EtvS~~fgR~y~~~ 238 (300)
T TIGR02424 162 EHLYNERVVFVVRAGHPLLAAPSLSVASLADYPVLLPPEGSIIRPLVERLLIACGIPALP---QRIETVSDSFGRRYVRE 238 (300)
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC---CHHHHHHHHHHHHHHHH
T ss_conf 514477337887085785578877778873388104862226799999999874765566---01344315788777645
Q ss_pred HCCEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 38423311777601---998466177666766008999348778888999999999999850
Q gi|254780282|r 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 238 g~Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
T Consensus 239 sdA~WiiS~gvv~~dl~~G~L~~Lp~~~~~t~GPVGL~~R~d~~~s~aaq~f~~alr~~~~~ 300 (300)
T TIGR02424 239 SDAVWIISEGVVAKDLADGTLVELPVDTRETAGPVGLCTRPDEQLSRAAQLFVDALRSAAEA 300 (300)
T ss_pred CCCEEECCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 47257726678988752892776465757788770215488877898999999999998519