HHsearch alignment for GI: 254780282 and conserved domain: TIGR03298
>TIGR03298 argP transcriptional regulator, ArgP family. ArgP used to be known as IciA. ArgP is a positive regulator of argK. It is a negative autoregulator in presence of arginine. It competes with DnaA for oriC iteron (13-mer) binding. It activates dnaA and nrd transcription. It has been demonstrated to be part of the pho regulon (PMID:10589831). ArgP mutants convey canavanine (an L-arginine structural homolog) sensitivity (PMID: 15150242).
Probab=100.00 E-value=0 Score=358.93 Aligned_cols=284 Identities=19% Similarity=0.206 Sum_probs=237.1
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~ 82 (299)
T Consensus 1 mdl~~L~~F~aVa~~gSfs~AA~~L~~sqsaVS~~I~~LE~~LG~~Lf~R-tr~v~LT~aG~~l~~~a~~i~~~~~~~~~ 79 (292)
T TIGR03298 1 LDYKQLAALAAVVEEGSFERAAAALSVTPSAVSQRIKALEERLGQPLLVR-TQPCRATEAGQRLLRHARQVRLLEAELLA 79 (292)
T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHEEC-CCCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98899999999998199999999978887899999999999829623188-99980488999999999999999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 001223222222333211100000000013566754200012222222--2222-2222222223456543211112234
Q gi|254780282|r 83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN--KDID-ISMDYADCAIRLRKPIQSSSLIQRK 159 (299)
Q Consensus 83 ~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~--~~~~-l~~~~~Di~i~~~~~~~~~~l~~~~ 159 (299)
T Consensus 80 ~~~~~~~~~~g~l~i~~~~~~~~~~l~p~l~~f~~~~-~v~l~l~~~~~~~~~d~l~~g~~~~ai~~~~-~~~~~~~~~~ 157 (292)
T TIGR03298 80 ELPGLAPGAPVTLSIAVNADSLATWFLPALAPVLAQE-GVLLDLVVEDQDHTAELLRSGEVLGAVTTQA-KPVQGCRVVP 157 (292)
T ss_pred HHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHHHHHHCCCEEEEEECCC-CCCCCCEEEE
T ss_conf 8752477774258887635778887899999999808-9879998545245899985697589997578-8898867999
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHH
Q ss_conf 555433211234432111-2222221100011235664332110002356652022343212114532420013567873
Q gi|254780282|r 160 LVTIHMHAYAAPHYLKNC-REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 (299)
Q Consensus 160 l~~~~~~~v~~~~~~~~~-~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g 238 (299)
T Consensus 158 L~~~~~~~vasP~~~~~~~~~~~~~~~L~~~p~l~~~~~~~~~---~~~~~~~~~~~~~~--~~~~v~s~~~~~~~v~aG 232 (292)
T TIGR03298 158 LGAMRYLAVASPAFAARYFPDGVTAEALARAPVIVFNRKDDLQ---DRFLRRLFGLPVSP--PRHYVPSSEGFVEAARAG 232 (292)
T ss_pred CCCEEEEEEECHHHHHHCCCCCCCHHHHHCCCEEEECCCCCHH---HHHHHHCCCCCCCC--CEEEECCHHHHHHHHHHC
T ss_conf 1140189998889998628999999999369879965996478---99998505777665--168988899999999949
Q ss_pred CCEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 8423311777601---9984661776667660089993487788889999999999998506
Q gi|254780282|r 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 (299)
Q Consensus 239 ~Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~~ 297 (299)
T Consensus 233 lGia~lP~~~v~~~l~~G~LV~llp~~~---~~~~l~~~~~r~~s~~~r~f~d~l~~~ar~~ 291 (292)
T TIGR03298 233 LGWGMVPELQAEPHLAAGRLVDLAPGRA---LDVPLYWHHWRLESRVLERLTDAVVAAARRA 291 (292)
T ss_pred CEEEECCHHHHHHHHHCCCEEEECCCCC---CCCCEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9889696999999985898588499987---9821648066867889999999999999864