HHsearch alignment for GI: 254780282 and conserved domain: TIGR03339
>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466).
Probab=100.00 E-value=0 Score=369.77 Aligned_cols=275 Identities=24% Similarity=0.317 Sum_probs=241.7
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 99999999982768999988289978999999999999588217976994685001343322222222221012210012
Q gi|254780282|r 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86 (299)
Q Consensus 7 ~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~~~~~ 86 (299)
T Consensus 1 qL~~F~~va~~gs~s~AA~~L~isQpavS~~I~~LE~~lg~~Lf~R~~r~v~lT~~G~~l~~~a~~il~~~~~~~~~~~~ 80 (279)
T TIGR03339 1 QLKAFHAVARCGSFTRAAERLGLSQPTVTDQVRKLEERYGVELFHRNGRRLELTDAGHRLLPIVERLFQQEAEAEFLLRE 80 (279)
T ss_pred CHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97899999980999999999888889999999999998598859998982589948889999999999999999999985
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 232222223332111000000000135667542000122222222---22222222222234565432111122345554
Q gi|254780282|r 87 SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTI 163 (299)
Q Consensus 87 ~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~~ 163 (299)
T Consensus 81 ~~~~~~g~l~ig~~---~~~~l~~~l~~f~~~~P~v~i~i~~~~~~~~~~~L~~~~~Di~i~~-~~~~~~~~~~~~l~~~ 156 (279)
T TIGR03339 81 SGALREGSLRIAAT---APYYVLDLVARFRQRYPGIEVSVRIGNSQEVLQALQSYRVDVAVSS-EVVDDPRLDRVVLGND 156 (279)
T ss_pred CCCCCCCEEEECCC---HHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCEEEEEEC-CCCCCCCEEEEEEECC
T ss_conf 02787451686175---1778999999999858986057895580877754025965899972-7889998399994044
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCEEE
Q ss_conf 33211234432111222222110001123566433211000235665202234321211453242001356787384233
Q gi|254780282|r 164 HMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 (299)
Q Consensus 164 ~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gia~ 243 (299)
T Consensus 157 ~~~~~~~~~~~la~~~~i~~~~l~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~Giai 232 (279)
T TIGR03339 157 PLVAVVHRQHPLAERESVTLEELAGQPLLMREPGSVTR----QTTEEALAAAGVAPRPALEIGSREAIREAVLAGLGVSV 232 (279)
T ss_pred CEEEEEECCCHHHCCCCCCHHHHCCCCEEEECCCCCHH----HHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCEEEE
T ss_conf 48999918863323999999997699989828998399----99999999779987536778969999999997993897
Q ss_pred EEHHHHCCCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 1177760199846617766676600899934877888899999999
Q gi|254780282|r 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 (299)
Q Consensus 244 lp~~~~~~~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~ 289 (299)
T Consensus 233 lP~~~v~~~~~l~~~pl~~~~~~~~~~l~~~~~r~~sp~~~aFie~ 278 (279)
T TIGR03339 233 VSAAEVGRDPRLRVLPIVGAEPTMDEYLYCLKERRGARLIAAFLEL 278 (279)
T ss_pred EEHHHHHHCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 1489961098989998988898627999998998689999999965