HHsearch alignment for GI: 254780282 and conserved domain: smart00347
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=97.32 E-value=0.00033 Score=43.70 Aligned_cols=75 Identities=25% Similarity=0.328 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-------CCEEEEECCCCCCCCCCC
Q ss_conf 88889999999999827--689999882899789999999999995882179769-------946850013433222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-------RGLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-------~~~~lT~~G~~l~~~a~~ 72 (299)
T Consensus 7 glt~~q~~vL~~l~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~---glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~ 83 (101)
T smart00347 7 GLTPTQFLVLRILYEEGPLSVSELAKRLGVSPSTVTRVLDRLEKK---GLIRRLPSPEDRRSVLVSLTEEGRELIEELLE 83 (101)
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 949999999999997699799999999896887999999999458---93898218999885898999899999999999
Q ss_pred CCCCCCH
Q ss_conf 2222101
Q gi|254780282|r 73 VYHKLET 79 (299)
Q Consensus 73 ~l~~~~~ 79 (299)
T Consensus 84 ~~~~~~~ 90 (101)
T smart00347 84 ARHETLA 90 (101)
T ss_pred HHHHHHH
T ss_conf 9999999