HHsearch results for GI: 254780282 and protein with PDBid: 1twy_A
>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} SCOP: c.94.1.1
Probab=98.59 E-value=7.5e-08 Score=63.58 Aligned_cols=198 Identities=11% Similarity=0.075 Sum_probs=108.3
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCC
Q ss_conf 222333211100000000013566754200012222222---222222222222234565432----1111223455543
Q gi|254780282|r 92 SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIRLRKPIQ----SSSLIQRKLVTIH 164 (299)
Q Consensus 92 ~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~~~~~~~----~~~l~~~~l~~~~ 164 (299)
.++|+|+.+.++. .++-.+...|.++||++++++.... ....+.+|.+|+++.- .+.. ...+...+++.+.
T Consensus 27 ~~~i~i~gs~s~~-~l~~~l~~~f~~~~P~~~v~~~~~gSg~~~~~l~~g~~di~~~s-~~~~~~e~~~~~~~~~ia~~~ 104 (290)
T 1twy_A 27 ASEITISGSTSVA-RIMDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMTS-RYLTESEAQNTLHTFTLAFDG 104 (290)
T ss_dssp -CEEEEEECHHHH-HHHHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHTTSCSEEEES-SCCCTTTCCTTCEEEEEEEEE
T ss_pred CCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCC-CCCHHHHHHCCCEEEEEEECC
T ss_conf 8869999605499-99999999999888895799971686799999982686412255-400134663450567788602
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC----------------CC--CCCCCCCCCCCCCHHHHHHHHCC-----CCCCCCCC
Q ss_conf 321123443211122222211000----------------11--23566433211000235665202-----23432121
Q gi|254780282|r 165 MHAYAAPHYLKNCREPLSIQELDK----------------HN--LITFGDLIPKCMEDFNWLATVDR-----PIGEPRIS 221 (299)
Q Consensus 165 ~~~v~~~~~~~~~~~~~~~~dL~~----------------~~--~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 221 (299)
++++++++.+... ++.++|.+ .+ .+....... ....+........ ........
T Consensus 105 ~~ivv~~~n~~~~---ls~~~L~~i~~g~it~W~~~~~~~~~i~~~~r~~~Sg-t~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (290)
T 1twy_A 105 LAIVVNQANPVTN---LTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSG-TRYSFESLMGLTKTVKDREVSDVAPT 180 (290)
T ss_dssp EEEEECTTCCCCE---ECHHHHHHHHHTSCCBGGGGTSCSCBCEEEEECTTCH-HHHHHHHHHTCEEEETTEEEECSCTT
T ss_pred EEEEECCCCCCCC---CCHHHHHHHHCCCCCCHHHCCCCCCCEEEECCCCCCC-HHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 5764057785234---5898985644287675310489988417852799972-79999999610442121210235771
Q ss_pred EEEECCCCHHHHHHHHHC-CEEEEEHHHHCCCCCEEEEC---C-------CCCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 145324200135678738-42331177760199846617---7-------666766008999348778888999999999
Q gi|254780282|r 222 CLQVNSYLSIMQYCVLGS-GIALLPDYIVKDNPNLVRIM---E-------DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 (299)
Q Consensus 222 ~~~~~s~~~~~~~v~~g~-Gia~lp~~~~~~~~~lv~i~---~-------~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l 290 (299)
....++...+...|..+. +|+++....+.+..+.+.+- | ...+..+++++++.++ ..++.+++|++|+
T Consensus 181 ~~~~~~~~~v~~~v~~~~~aig~~~~~~~~~~vk~l~i~~v~Ps~~~i~~g~YPl~~~~~~i~~~~-~~~~~a~~Fi~fl 259 (290)
T 1twy_A 181 ALVVNSNSMMKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSD-NADEQTKEFIAFL 259 (290)
T ss_dssp SEEESSHHHHHHHHHHCTTEEEEEEGGGCCTTSEECEETTBCCCHHHHHTTCSCCEEEEEEEECTT-TCCHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHCCCCCEEEEEEEECCCCCCEEEECCCCCCHHHHHCCCCCCEEEEEEEEECC-CCCHHHHHHHHHH
T ss_conf 279438489999996488851787752004774265543768997788549987178999999689-9999999999998
Q ss_pred HHH-HHC
Q ss_conf 999-850
Q gi|254780282|r 291 FLK-ARD 296 (299)
Q Consensus 291 ~~~-~r~ 296 (299)
+++ .|+
T Consensus 260 ~S~~gq~ 266 (290)
T 1twy_A 260 KSESAKK 266 (290)
T ss_dssp HSHHHHH
T ss_pred HCHHHHH
T ss_conf 0998899