HHsearch results for GI: 254780282 and protein with PDBid: 1ub9_A

>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28

Probab=96.94  E-value=0.0008  Score=40.25  Aligned_cols=69  Identities=16%  Similarity=0.187  Sum_probs=49.4

Q ss_pred             CHHHHHHHHHHHHH--CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCC----CEEEEECCCCCCCCCCC
Q ss_conf             88999999999982--76899998828997899999999999958821797699----46850013433222222
Q gi|254780282|r    4 DWDKLRVFYVVARS--GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR----GLTLTEQGSKLHRVTSE   72 (299)
Q Consensus         4 d~~~L~~f~~v~~~--gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~----~~~lT~~G~~l~~~a~~   72 (299)
                      |-.+++.+..+.+.  -+++.-|+.+++|++++|+++++||+.==+.-....+.    -+.+|+.|+..++...+
T Consensus        15 ~p~r~~IL~~L~~~~~~t~~eLa~~l~is~~~vs~~l~~Le~~glV~~~~~~~d~r~~~~~LT~~G~~~~~~~~~   89 (100)
T 1ub9_A           15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLS   89 (100)
T ss_dssp             SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCCEEECCCCHHHHHHHHHHHH
T ss_conf             999999999985189983999999989199899999999985890699874888973100359999999999999