HHsearch results for GI: 254780282 and protein with PDBid: 1xs5_A
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=90.55 E-value=0.27 Score=25.63 Aligned_cols=191 Identities=8% Similarity=0.035 Sum_probs=80.0
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC-CC---CCCCCCCCCCCCCCCCCCCCC-----CCCCCC---CCCC
Q ss_conf 23332111000000000135667542000122222-22---222222222222234565432-----111122---3455
Q gi|254780282|r 94 KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL-DN---KDIDISMDYADCAIRLRKPIQ-----SSSLIQ---RKLV 161 (299)
Q Consensus 94 ~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~-~~---~~~~l~~~~~Di~i~~~~~~~-----~~~l~~---~~l~ 161 (299)
+|+||..+.-.. .+...+..+.+++ ++++++.. ++ ....|..|++|+++.-..|.- ..+... -...
T Consensus 4 ti~iG~~~~~~~-~~l~~~k~~~k~~-Gl~Ve~~~f~~g~~~~~Al~sG~iD~~~~g~~p~l~~~~~~~~~~l~~v~~~~ 81 (241)
T 1xs5_A 4 TVGVGVLSEPHA-RLLEIAKEEVKKQ-HIELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFNQEHNGDLVSVGNVH 81 (241)
T ss_dssp EEEEEECSTTHH-HHHHHHHHHHHTT-TEEEEEEECSCHHHHHHHHHHTSSSEEEEEEHHHHHHHHHHHTCCEEEEEEEE
T ss_pred EEEEEECCCCHH-HHHHHHHHHHHHC-CCEEEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 299996069859-9999999999974-98899999388177899997699767985578899998854697389998841
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC--------C--------CCCCEEEE
Q ss_conf 5433211234432111222222110001123566433211000235665202234--------3--------21211453
Q gi|254780282|r 162 TIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG--------E--------PRISCLQV 225 (299)
Q Consensus 162 ~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--------~--------~~~~~~~~ 225 (299)
...+.++.++ ..++.|+.+-.-|...............+........ . ........
T Consensus 82 ~~~~~l~~~~--------~~s~~d~~~gk~ia~~~~~s~~~~~~~~l~~~~~~~l~~~~~~~~~~~Di~~~~~~~~~~~~ 153 (241)
T 1xs5_A 82 VEPLALYSRT--------YRHVSDFPAGAVIAIPNDSSNEARALRLLEAAGFIRMRAGSGLFATVEDVQQNVRNVVLQEV 153 (241)
T ss_dssp ECCCEEECSS--------CCSGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEEECTTCCEEEEE
T ss_pred CCCEEEEECC--------CCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHCCCCCCCCCC
T ss_conf 4654888368--------67766734887698258882799999999975881343688876776566534344542574
Q ss_pred CCCCHHHHHHHHH--CCEEEEEHHHHC--CCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH-HHHHCC
Q ss_conf 2420013567873--842331177760--19984661776667660089993487788889999999999-998506
Q gi|254780282|r 226 NSYLSIMQYCVLG--SGIALLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF-LKARDW 297 (299)
Q Consensus 226 ~s~~~~~~~v~~g--~Gia~lp~~~~~--~~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~-~~~r~~ 297 (299)
+ .....-..| .++..-+.+... ..+.-..+.......+....++.++....++.+++|++.+. +++++|
T Consensus 154 ~---~a~~a~~~~~vda~~~~~p~~~~a~~~~~~~~l~~~~~~~~~~~~lv~r~~~~~~~~i~~l~~a~~~~ev~~~ 227 (241)
T 1xs5_A 154 E---SALLPRVFDQVDGAVINGNYAIMAGLSARRDGLAVEPDASAYANVLVVKRGNEADARVQAVLRALCGGRVRTY 227 (241)
T ss_dssp C---GGGHHHHGGGSSEEEECHHHHHHTTCCTTTTCSEECSCGGGGCEEEEEETTCTTCHHHHHHHHHHTSHHHHHH
T ss_pred C---HHHHHHHCCCCCEEEECCCHHHHHCCCCCCCEEEECCCCCCEEEEEEECCHHHCCHHHHHHHHHHCCHHHHHH
T ss_conf 4---7677774277757996464899855887667799637898637999983401098999999999779999999