HHsearch results for GI: 254780282 and protein with PDBid: 3bpv_A

>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=97.32  E-value=0.00032  Score=42.56  Aligned_cols=78  Identities=17%  Similarity=0.220  Sum_probs=61.6

Q ss_pred             CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-----CCEEEEECCCCCCCCCCCCC
Q ss_conf             88889999999999827--689999882899789999999999995882179769-----94685001343322222222
Q gi|254780282|r    2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-----RGLTLTEQGSKLHRVTSEVY   74 (299)
Q Consensus         2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-----~~~~lT~~G~~l~~~a~~~l   74 (299)
                      +++..++.++..+.+++  +.+.-|+.+++++|+||+.|++||+. |.---.+++     ..+.+|+.|+.+++......
T Consensus        26 ~lt~~q~~vL~~i~~~~~~t~~eLa~~~~~~~~~vs~~v~~L~~~-glv~r~~~~~DrR~~~l~lT~~G~~l~~~~~~~~  104 (138)
T 3bpv_A           26 NLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEES-GFIEREQDPENRRRYILEVTRRGEEIIPLILKVE  104 (138)
T ss_dssp             TCCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEEEEECHHHHHTHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEECCCCCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf             989999999999985899799999999897987999999999968-9878602899887568788989999999999999


Q ss_pred             CCCCHH
Q ss_conf             221012
Q gi|254780282|r   75 HKLETT   80 (299)
Q Consensus        75 ~~~~~~   80 (299)
                      ....+.
T Consensus       105 ~~~~~~  110 (138)
T 3bpv_A          105 ERWEDL  110 (138)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999999