HHsearch results for GI: 254780282 and protein with PDBid: 3cjn_A

>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=97.57  E-value=4.7e-05  Score=47.36  Aligned_cols=78  Identities=15%  Similarity=0.176  Sum_probs=61.0

Q ss_pred             CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-----CCEEEEECCCCCCCCCCCCC
Q ss_conf             88889999999999827--689999882899789999999999995882179769-----94685001343322222222
Q gi|254780282|r    2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-----RGLTLTEQGSKLHRVTSEVY   74 (299)
Q Consensus         2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-----~~~~lT~~G~~l~~~a~~~l   74 (299)
                      +++..+..++..++..+  +.+.=|+.++++.|+||+.|++||+. |.--..+.+     ..+.||+.|+.+++.+....
T Consensus        49 gLt~~q~~iL~~l~~~~~~t~~~La~~~~~~~~~vsr~v~~L~~~-glI~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~  127 (162)
T 3cjn_A           49 GLSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQAD-GLVRREVDSDDQRSSRVYLTPAGRAVYDRLWPHM  127 (162)
T ss_dssp             TCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEC--CCSSEEEEECHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf             959999999999984799899999999897988999999999868-9668852268888667678988999999999999


Q ss_pred             CCCCHH
Q ss_conf             221012
Q gi|254780282|r   75 HKLETT   80 (299)
Q Consensus        75 ~~~~~~   80 (299)
                      ....+-
T Consensus       128 ~~~~~~  133 (162)
T 3cjn_A          128 RASHDR  133 (162)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999999