HHsearch results for GI: 254780282 and protein with PDBid: 3cjn_A
>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=97.57 E-value=4.7e-05 Score=47.36 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-----CCEEEEECCCCCCCCCCCCC
Q ss_conf 88889999999999827--689999882899789999999999995882179769-----94685001343322222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-----RGLTLTEQGSKLHRVTSEVY 74 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-----~~~~lT~~G~~l~~~a~~~l 74 (299)
+++..+..++..++..+ +.+.=|+.++++.|+||+.|++||+. |.--..+.+ ..+.||+.|+.+++.+....
T Consensus 49 gLt~~q~~iL~~l~~~~~~t~~~La~~~~~~~~~vsr~v~~L~~~-glI~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~ 127 (162)
T 3cjn_A 49 GLSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQAD-GLVRREVDSDDQRSSRVYLTPAGRAVYDRLWPHM 127 (162)
T ss_dssp TCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEC--CCSSEEEEECHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf 959999999999984799899999999897988999999999868-9668852268888667678988999999999999
Q ss_pred CCCCHH
Q ss_conf 221012
Q gi|254780282|r 75 HKLETT 80 (299)
Q Consensus 75 ~~~~~~ 80 (299)
....+-
T Consensus 128 ~~~~~~ 133 (162)
T 3cjn_A 128 RASHDR 133 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999