HHsearch results for GI: 254780282 and protein with PDBid: 3fxq_A
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- plasmid, transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A
Probab=100.00 E-value=0 Score=346.51 Aligned_cols=289 Identities=18% Similarity=0.168 Sum_probs=246.2
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~ 82 (299)
||+++|++|++|+++|||++||++||+||||||++|++||++||++||+|+++|+.||++|+.|+++++.+++.++++..
T Consensus 2 m~~~~L~~f~~v~~~~s~~~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~il~~~~~~~~ 81 (305)
T 3fxq_A 2 LKLQTLQALICIEEVGSLRAAAQLLHLSQPALSAAIQQLEDELKAPLLVRTKRGVSLTSFGQAFMKHARLIVTESRRAQE 81 (305)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHTTCCHHHHHHHHHHHHHHHTSCSEEECSSSEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98899999999998399999999988888999999999999869989998599147997375221232134466999997
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf 001223222222333211100000000013566754200012222222---22222222222223456543-21111223
Q gi|254780282|r 83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIRLRKPI-QSSSLIQR 158 (299)
Q Consensus 83 ~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~~~~~~-~~~~l~~~ 158 (299)
.+...+.+..|+|+||++++++..++++.+.+|.++||++.+++...+ ....+..|++|++|....+. .++++...
T Consensus 82 ~~~~~~~~~~~~l~I~~~~~~~~~~l~~~i~~~~~~~p~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~l~~~ 161 (305)
T 3fxq_A 82 EIGQLRGRWEGHITFAASPAIALAALPLALASFAREFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDIDTDLEAQ 161 (305)
T ss_dssp HHHHHHHHHHTEEEEEECHHHHHTHHHHHHHHHHHHCTTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGGGSCTTEEEE
T ss_pred HHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEEECCCCCCCCCCEEE
T ss_conf 55320347662599962463027678999999999789976765744817777787559734899840554356884378
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHH
Q ss_conf 45554332112344321112222221100011235664332110002356652022343212114532420013567873
Q gi|254780282|r 159 KLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 (299)
Q Consensus 159 ~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g 238 (299)
++++++++++++++|+...+ .+++|+..++|+..............++...+ ..+....+++++..+++++|..|
T Consensus 162 ~l~~~~~~~~~~~~hpl~~~--~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~v~~g 236 (305)
T 3fxq_A 162 PLYVSDVVIVGQRQHPMANA--TRLAELQECRWAFSSAPRGPGAIIRNAFARYG---LPEPKLGLVCESFLALPGVVAHS 236 (305)
T ss_dssp EEEECCEEEEEETTCTTTTC--CSGGGGTTSEEEEECCTTSTTHHHHHHHHHTT---CCCCEEEEEECCTTTHHHHHHTS
T ss_pred ECCCCCEEEEECCCCCCCCC--CCHHHHHCCEEEEECCCCCCCHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 71444179998688845689--89567530214552377653125778999719---86322333336799999999749
Q ss_pred CCEEEEEHHHHCCC---CCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 84233117776019---98466177666766008999348778888999999999999850
Q gi|254780282|r 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 239 ~Gia~lp~~~~~~~---~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
.|++++|.+++... ++++.+....+...+.+|++|+++...+|+++.|++++.+.+++
T Consensus 237 ~gi~~lp~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~fi~~i~~~~~~ 297 (305)
T 3fxq_A 237 DLLTTMPRTLYERNAFKDQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHALQ 297 (305)
T ss_dssp SCEEEEEHHHHHSSTTGGGEEECCCSSCCCCCEEEEEEETTSCCCHHHHHHHHHHHHHCC-
T ss_pred CEEEECCHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9899811999985513799899968888877689999989698899999999999999995