HHsearch results for GI: 254780282 and protein with PDBid: 3hhf_B

>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=99.96  E-value=5e-31  Score=197.89  Aligned_cols=203  Identities=20%  Similarity=0.284  Sum_probs=168.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             22222233321110000000001356675420001222222222222222222223456543211112234555433211
Q gi|254780282|r   89 VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY  168 (299)
Q Consensus        89 ~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~~~~~~v  168 (299)
                      +.++|+||||++++++.++|++.|.+|+++||+|+|++.+++...++.++++|++|..... .++++....+++++++++
T Consensus         3 ~~~~G~lrI~~~~~~~~~~L~p~l~~F~~~~P~v~i~i~~~~~~~~l~~~~~d~~i~~~~~-~~~~~~~~~l~~~~~~~~   81 (213)
T 3hhf_B            3 EIPQGVLSVDSAMPMVLHLLAPLAAKFNERYPHIRLSLVSSEGYINLIERKVDIALRAGEL-DDSGLRARHLFDSRFRVI   81 (213)
T ss_dssp             --CCEEEEEEECHHHHHHTHHHHHHHHHHHCTTEEEEEECCSTTHHHHTTSSSEEEECC---CCSSEEEEEEEEECEEEE
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHEEEEHHCCCCC-CCCCCCEEEEEEEEEEEC
T ss_conf             8842799991388999999999999999988497999997563012231201010004776-665431246300568850


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCEEEEEHHH
Q ss_conf             23443211122222211000112356643321100023566520223432121145324200135678738423311777
Q gi|254780282|r  169 AAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI  248 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gia~lp~~~  248 (299)
                      ++++|+...+.+.+++|+..++++.+..........    ..............+++++.++++++|.+|+|++++|..+
T Consensus        82 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~Gva~lp~~~  157 (213)
T 3hhf_B           82 ASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNTWA----VLDAQGNPYKISPHFTASSGEILRSLCLSGCGIVCLSDFL  157 (213)
T ss_dssp             ECHHHHHHHCCCSSGGGGGGSCBCEESSCGGGGEEE----EECTTSCEEECCCSSEESSHHHHHHHHHTTSCBEEEEHHH
T ss_pred             CCHHHHHHCCCCCCHHHHCCCCEEEECCCCCCCCEE----EHHCCCCEEEECCEEEECCHHHHHHHHHHCCEEEECCHHH
T ss_conf             460468843999881563255279853775531000----0113574132035078877999999998299399955899


Q ss_pred             HCC---CCCEEEECCCC-CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             601---99846617766-6766008999348778888999999999999850
Q gi|254780282|r  249 VKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD  296 (299)
Q Consensus       249 ~~~---~~~lv~i~~~~-~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~  296 (299)
                      +++   .++++++++.. ......+|++|++++..++++++|+|||.+++.+
T Consensus       158 v~~~~~~g~Lv~vl~~~~~~~~~~i~lv~~~~~~~~~~~~~fid~l~~~l~~  209 (213)
T 3hhf_B          158 VDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLVEELGN  209 (213)
T ss_dssp             HHHHHHHTSSEEECTTTBCCCCEEEEEEEEGGGGGCHHHHHHHHHHHHHC--
T ss_pred             HHHHCCCCCEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCH
T ss_conf             8755028968995775667872089999979987899999999999998530