HHsearch results for GI: 254780282 and protein with PDBid: 3hhf_B
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=99.96 E-value=5e-31 Score=197.89 Aligned_cols=203 Identities=20% Similarity=0.284 Sum_probs=168.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22222233321110000000001356675420001222222222222222222223456543211112234555433211
Q gi|254780282|r 89 VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY 168 (299)
Q Consensus 89 ~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~~~~~~v 168 (299)
+.++|+||||++++++.++|++.|.+|+++||+|+|++.+++...++.++++|++|..... .++++....+++++++++
T Consensus 3 ~~~~G~lrI~~~~~~~~~~L~p~l~~F~~~~P~v~i~i~~~~~~~~l~~~~~d~~i~~~~~-~~~~~~~~~l~~~~~~~~ 81 (213)
T 3hhf_B 3 EIPQGVLSVDSAMPMVLHLLAPLAAKFNERYPHIRLSLVSSEGYINLIERKVDIALRAGEL-DDSGLRARHLFDSRFRVI 81 (213)
T ss_dssp --CCEEEEEEECHHHHHHTHHHHHHHHHHHCTTEEEEEECCSTTHHHHTTSSSEEEECC---CCSSEEEEEEEEECEEEE
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHEEEEHHCCCCC-CCCCCCEEEEEEEEEEEC
T ss_conf 8842799991388999999999999999988497999997563012231201010004776-665431246300568850
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCEEEEEHHH
Q ss_conf 23443211122222211000112356643321100023566520223432121145324200135678738423311777
Q gi|254780282|r 169 AAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gia~lp~~~ 248 (299)
++++|+...+.+.+++|+..++++.+.......... ..............+++++.++++++|.+|+|++++|..+
T Consensus 82 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~Gva~lp~~~ 157 (213)
T 3hhf_B 82 ASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNTWA----VLDAQGNPYKISPHFTASSGEILRSLCLSGCGIVCLSDFL 157 (213)
T ss_dssp ECHHHHHHHCCCSSGGGGGGSCBCEESSCGGGGEEE----EECTTSCEEECCCSSEESSHHHHHHHHHTTSCBEEEEHHH
T ss_pred CCHHHHHHCCCCCCHHHHCCCCEEEECCCCCCCCEE----EHHCCCCEEEECCEEEECCHHHHHHHHHHCCEEEECCHHH
T ss_conf 460468843999881563255279853775531000----0113574132035078877999999998299399955899
Q ss_pred HCC---CCCEEEECCCC-CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 601---99846617766-6766008999348778888999999999999850
Q gi|254780282|r 249 VKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 249 ~~~---~~~lv~i~~~~-~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
+++ .++++++++.. ......+|++|++++..++++++|+|||.+++.+
T Consensus 158 v~~~~~~g~Lv~vl~~~~~~~~~~i~lv~~~~~~~~~~~~~fid~l~~~l~~ 209 (213)
T 3hhf_B 158 VDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLVEELGN 209 (213)
T ss_dssp HHHHHHHTSSEEECTTTBCCCCEEEEEEEEGGGGGCHHHHHHHHHHHHHC--
T ss_pred HHHHCCCCCEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCH
T ss_conf 8755028968995775667872089999979987899999999999998530