HHsearch results for GI: 254780282 and protein with PDBid: 3hhg_A

>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=100.00  E-value=0  Score=362.80  Aligned_cols=291  Identities=24%  Similarity=0.375  Sum_probs=256.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHH
Q ss_conf             98888999999999982768999988289978999999999999588217976994685001343322222222221012
Q gi|254780282|r    1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETT   80 (299)
Q Consensus         1 m~md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~   80 (299)
                      |++|++||++|++|+++|||++||++|++||||||++|++||++||++||+|+++|+.||++|+.++++++.++..++.+
T Consensus         1 m~~~~~qL~~F~~v~e~gs~s~AA~~L~vsQpavS~~I~~LE~~lg~~LF~R~~~~~~lT~~G~~l~~~a~~il~~~~~~   80 (306)
T 3hhg_A            1 MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLTEEGAQYFRRAQRILQEMAAA   80 (306)
T ss_dssp             -CCCHHHHHHHHHHHHSSSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEETTSSSCEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf             99988999999999981999999999887989999999999999699999986995688863643337899999988765


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             21001223222222333211100000000013566754200012222222222222222222234565432111122345
Q gi|254780282|r   81 QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL  160 (299)
Q Consensus        81 ~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l  160 (299)
                      ............+.++++++++++..++++.+..+.+.+|++.+++..++...+|..|++|++|.... ..++++...+|
T Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~L~~~~~Dl~i~~~~-~~~~~l~~~~l  159 (306)
T 3hhg_A           81 ETEMLAVHEIPQGVLSVDSAMPMVLHLLAPLAAKFNERYPHIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHL  159 (306)
T ss_dssp             HHHHHTTSSCCCEEEEEEBCHHHHHHTHHHHHHHHHHHCTTEEEEEECCSSSHHHHTTSSSCEEESCC-CCCSSCEEEEE
T ss_pred             HHHHHCCCCCCCCCCEEECCHHHHHHHCCHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCEEEEECCC-CCCCCEEEEEE
T ss_conf             55531133112575035302158988716132788986898459997374788987499039998178-88898489996


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCC
Q ss_conf             55433211234432111222222110001123566433211000235665202234321211453242001356787384
Q gi|254780282|r  161 VTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG  240 (299)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~G  240 (299)
                      ++++++++|+++|+...+.+++++++.++++|.+............+    ....+......+++++..++.++|.+|.|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~g~g  235 (306)
T 3hhg_A          160 FDSRFRVIASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNTWAVLD----AQGNPYKISPHFTASSGEILRSLCLSGCG  235 (306)
T ss_dssp             EEEEEEEEECHHHHHHHCCCSSTTGGGGSCBCEESSTTTSCEEEEEC----SSSCEEECCCSSEESSHHHHHHHHHTTSC
T ss_pred             EEEEEEEEEECHHHHHCCCCCCHHHHCCCCEEEECCCCCHHHHHHHH----HHCCCCCCCCCEECCCHHHHHHHHHCCCC
T ss_conf             30359999806477645998997896148479856998603678876----30576554543102689999999981992


Q ss_pred             EEEEEHHHHCC---CCCEEEECCC-CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             23311777601---9984661776-66766008999348778888999999999999850
Q gi|254780282|r  241 IALLPDYIVKD---NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD  296 (299)
Q Consensus       241 ia~lp~~~~~~---~~~lv~i~~~-~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~  296 (299)
                      ++++|.+++.+   +++++.++++ .+.+.+++|++|++++..++++++|+|||.++.++
T Consensus       236 i~~lp~~~~~~~l~~~~lv~i~~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~e~l~~  295 (306)
T 3hhg_A          236 IVCLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLVEELGN  295 (306)
T ss_dssp             EEEEEHHHHHHHHHHTSSEECSTTTBCCCEEEEEEEECSGGGGCHHHHHHHHHHHHHCC-
T ss_pred             EEECCHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             899239999999977986995674567871389999979987899999999999998571