HHsearch results for GI: 254780282 and protein with PDBid: 3hhg_A
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=100.00 E-value=0 Score=362.80 Aligned_cols=291 Identities=24% Similarity=0.375 Sum_probs=256.5
Q ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHH
Q ss_conf 98888999999999982768999988289978999999999999588217976994685001343322222222221012
Q gi|254780282|r 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETT 80 (299)
Q Consensus 1 m~md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~ 80 (299)
|++|++||++|++|+++|||++||++|++||||||++|++||++||++||+|+++|+.||++|+.++++++.++..++.+
T Consensus 1 m~~~~~qL~~F~~v~e~gs~s~AA~~L~vsQpavS~~I~~LE~~lg~~LF~R~~~~~~lT~~G~~l~~~a~~il~~~~~~ 80 (306)
T 3hhg_A 1 MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLTEEGAQYFRRAQRILQEMAAA 80 (306)
T ss_dssp -CCCHHHHHHHHHHHHSSSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEETTSSSCEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 99988999999999981999999999887989999999999999699999986995688863643337899999988765
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21001223222222333211100000000013566754200012222222222222222222234565432111122345
Q gi|254780282|r 81 QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL 160 (299)
Q Consensus 81 ~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l 160 (299)
............+.++++++++++..++++.+..+.+.+|++.+++..++...+|..|++|++|.... ..++++...+|
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~L~~~~~Dl~i~~~~-~~~~~l~~~~l 159 (306)
T 3hhg_A 81 ETEMLAVHEIPQGVLSVDSAMPMVLHLLAPLAAKFNERYPHIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHL 159 (306)
T ss_dssp HHHHHTTSSCCCEEEEEEBCHHHHHHTHHHHHHHHHHHCTTEEEEEECCSSSHHHHTTSSSCEEESCC-CCCSSCEEEEE
T ss_pred HHHHHCCCCCCCCCCEEECCHHHHHHHCCHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCEEEEECCC-CCCCCEEEEEE
T ss_conf 55531133112575035302158988716132788986898459997374788987499039998178-88898489996
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCC
Q ss_conf 55433211234432111222222110001123566433211000235665202234321211453242001356787384
Q gi|254780282|r 161 VTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 (299)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~G 240 (299)
++++++++|+++|+...+.+++++++.++++|.+............+ ....+......+++++..++.++|.+|.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~g~g 235 (306)
T 3hhg_A 160 FDSRFRVIASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNTWAVLD----AQGNPYKISPHFTASSGEILRSLCLSGCG 235 (306)
T ss_dssp EEEEEEEEECHHHHHHHCCCSSTTGGGGSCBCEESSTTTSCEEEEEC----SSSCEEECCCSSEESSHHHHHHHHHTTSC
T ss_pred EEEEEEEEEECHHHHHCCCCCCHHHHCCCCEEEECCCCCHHHHHHHH----HHCCCCCCCCCEECCCHHHHHHHHHCCCC
T ss_conf 30359999806477645998997896148479856998603678876----30576554543102689999999981992
Q ss_pred EEEEEHHHHCC---CCCEEEECCC-CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 23311777601---9984661776-66766008999348778888999999999999850
Q gi|254780282|r 241 IALLPDYIVKD---NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 241 ia~lp~~~~~~---~~~lv~i~~~-~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
++++|.+++.+ +++++.++++ .+.+.+++|++|++++..++++++|+|||.++.++
T Consensus 236 i~~lp~~~~~~~l~~~~lv~i~~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~e~l~~ 295 (306)
T 3hhg_A 236 IVCLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLVEELGN 295 (306)
T ss_dssp EEEEEHHHHHHHHHHTSSEECSTTTBCCCEEEEEEEECSGGGGCHHHHHHHHHHHHHCC-
T ss_pred EEECCHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 899239999999977986995674567871389999979987899999999999998571