HHsearch results for GI: 254780282 and protein with PDBid: 3ho7_A

>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=99.95  E-value=7.9e-29  Score=185.14  Aligned_cols=207  Identities=13%  Similarity=0.080  Sum_probs=164.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             01223222222333211100000000013566754200012222222--2-22222222222234565432111122345
Q gi|254780282|r   84 LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN--K-DIDISMDYADCAIRLRKPIQSSSLIQRKL  160 (299)
Q Consensus        84 ~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~--~-~~~l~~~~~Di~i~~~~~~~~~~l~~~~l  160 (299)
                      +++.++..+|+|+||++++++.+++|+++.+|+++||++++++....  . ...|.+|++|++|... +...+++...++
T Consensus         2 ~~e~~~~~~G~l~ig~~~s~~~~~lp~~l~~f~~~~P~v~l~l~~~~~~~~~~~L~~g~iD~~i~~~-~~~~~~l~~~~l   80 (232)
T 3ho7_A            2 IEEEQQSLTGRLNIAVLPTIAPYLLPRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAIIAS-KAETEGLEDDLL   80 (232)
T ss_dssp             --------CEEEEEEECTTTHHHHHHHHHHHHHHHSTTEEEEEEECCHHHHHHHHHHTSCSEEEESS-CCCCTTEEEEEE
T ss_pred             HHHHCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEEEC-CCCCCCCEEEEE
T ss_conf             1252789627999994377899999999999999888968999989828999999779842898634-765543003420


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCC
Q ss_conf             55433211234432111222222110001123566433211000235665202234321211453242001356787384
Q gi|254780282|r  161 VTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG  240 (299)
Q Consensus       161 ~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~G  240 (299)
                      ++++++++++++|+.....+++.+++.+++++.+............++..   ....+....++++++.+++++|.+|.|
T Consensus        81 ~~~~~~lv~~~~h~l~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~lv~~g~G  157 (232)
T 3ho7_A           81 YYEEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDEGHCFRDQLVRFCQM---KGLHERQTAYSGGSMEAFMRLVESGQG  157 (232)
T ss_dssp             EEEEEEEEECTTSGGGGSSSBCGGGCCGGGBCCCTTTTTTTSTTHHHHTC---TTTTCSSEEEESCCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHH---CCCCCCCCCCCCCCHHHHHHHHHHCCE
T ss_conf             00102221113454332222213331455379825997426799999997---599887650135888999999993998


Q ss_pred             EEEEEHHHHCCCC---CEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             2331177760199---84661776667660089993487788889999999999998
Q gi|254780282|r  241 IALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA  294 (299)
Q Consensus       241 ia~lp~~~~~~~~---~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~  294 (299)
                      +|++|.+.+++..   .++......+.+.++++++|++++..++.+++|++++.+.+
T Consensus       158 ia~lP~~~~~~~~~~~~l~~~p~~~~~~~~~i~lv~~~~~~~~~~~~~fi~~l~~~i  214 (232)
T 3ho7_A          158 ITFIPQLTVEQLSPSQKELVRPFGMPRPVREVRLAVRQDYSRRKLREQLIGLLRSAV  214 (232)
T ss_dssp             EEEEEGGGGGGSCHHHHTTEECBCSSEEEEEEEEEEETTCSCHHHHHHHHHHHHTTS
T ss_pred             EEEECHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             998309999855027988999889998655999999893988999999999999971