HHsearch results for GI: 254780282 and protein with PDBid: 3ho7_A
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=99.95 E-value=7.9e-29 Score=185.14 Aligned_cols=207 Identities=13% Similarity=0.080 Sum_probs=164.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01223222222333211100000000013566754200012222222--2-22222222222234565432111122345
Q gi|254780282|r 84 LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN--K-DIDISMDYADCAIRLRKPIQSSSLIQRKL 160 (299)
Q Consensus 84 ~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~--~-~~~l~~~~~Di~i~~~~~~~~~~l~~~~l 160 (299)
+++.++..+|+|+||++++++.+++|+++.+|+++||++++++.... . ...|.+|++|++|... +...+++...++
T Consensus 2 ~~e~~~~~~G~l~ig~~~s~~~~~lp~~l~~f~~~~P~v~l~l~~~~~~~~~~~L~~g~iD~~i~~~-~~~~~~l~~~~l 80 (232)
T 3ho7_A 2 IEEEQQSLTGRLNIAVLPTIAPYLLPRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAIIAS-KAETEGLEDDLL 80 (232)
T ss_dssp --------CEEEEEEECTTTHHHHHHHHHHHHHHHSTTEEEEEEECCHHHHHHHHHHTSCSEEEESS-CCCCTTEEEEEE
T ss_pred HHHHCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEEEC-CCCCCCCEEEEE
T ss_conf 1252789627999994377899999999999999888968999989828999999779842898634-765543003420
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCC
Q ss_conf 55433211234432111222222110001123566433211000235665202234321211453242001356787384
Q gi|254780282|r 161 VTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 (299)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~G 240 (299)
++++++++++++|+.....+++.+++.+++++.+............++.. ....+....++++++.+++++|.+|.|
T Consensus 81 ~~~~~~lv~~~~h~l~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~lv~~g~G 157 (232)
T 3ho7_A 81 YYEEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDEGHCFRDQLVRFCQM---KGLHERQTAYSGGSMEAFMRLVESGQG 157 (232)
T ss_dssp EEEEEEEEECTTSGGGGSSSBCGGGCCGGGBCCCTTTTTTTSTTHHHHTC---TTTTCSSEEEESCCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHH---CCCCCCCCCCCCCCHHHHHHHHHHCCE
T ss_conf 00102221113454332222213331455379825997426799999997---599887650135888999999993998
Q ss_pred EEEEEHHHHCCCC---CEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 2331177760199---84661776667660089993487788889999999999998
Q gi|254780282|r 241 IALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 (299)
Q Consensus 241 ia~lp~~~~~~~~---~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~ 294 (299)
+|++|.+.+++.. .++......+.+.++++++|++++..++.+++|++++.+.+
T Consensus 158 ia~lP~~~~~~~~~~~~l~~~p~~~~~~~~~i~lv~~~~~~~~~~~~~fi~~l~~~i 214 (232)
T 3ho7_A 158 ITFIPQLTVEQLSPSQKELVRPFGMPRPVREVRLAVRQDYSRRKLREQLIGLLRSAV 214 (232)
T ss_dssp EEEEEGGGGGGSCHHHHTTEECBCSSEEEEEEEEEEETTCSCHHHHHHHHHHHHTTS
T ss_pred EEEECHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 998309999855027988999889998655999999893988999999999999971