HHsearch results for GI: 254780282 and protein with PDBid: 3jv9_A
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=99.94 E-value=9.5e-28 Score=178.88 Aligned_cols=202 Identities=14% Similarity=0.122 Sum_probs=157.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22223332111000000000135667542000122222222---222222222222345654321111223455543321
Q gi|254780282|r 91 PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA 167 (299)
Q Consensus 91 ~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~~~~~~ 167 (299)
.+|+||||++++++.+++|+++.+|+++||+|++++...+. ...+.+|++|++|... +...+++...+++++++++
T Consensus 2 l~G~lrIG~~~s~~~~~lp~~l~~f~~~~P~v~l~i~~~~~~~l~~~l~~g~~D~~i~~~-~~~~~~~~~~~l~~e~~~l 80 (219)
T 3jv9_A 2 LEGAFKLGLIFTVAPYLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAE-PFQEPGIVTEPLYDEPFFV 80 (219)
T ss_dssp -CCCEEEEEETTTHHHHHHHHHHHHHHHSTTCCEEEEEECHHHHHHHHHHTSSSEEEEES-SCCCTTEEEEEEEEEEEEE
T ss_pred CCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEECC-CCCCCCEEEEEECCCCEEE
T ss_conf 802899997778899999999999999888928999988737777656169588875026-8777874898503310899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC-CCCCCCCEEEECCCCHHHHHHHHHCCEEEEEH
Q ss_conf 12344321112222221100011235664332110002356652022-34321211453242001356787384233117
Q gi|254780282|r 168 YAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 (299)
Q Consensus 168 v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~v~~g~Gia~lp~ 246 (299)
+++++|+...+...+++++..++++.+............++...+.. ........+++++..+++++|.+|.|++++|.
T Consensus 81 v~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~G~Gi~~lP~ 160 (219)
T 3jv9_A 81 IVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRHMVASGLAISVLPA 160 (219)
T ss_dssp EEETTCGGGTSSSCCSSTTSSSCEEEECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHHHHHHHTSCEEEEEG
T ss_pred EEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHCCCEEEECCH
T ss_conf 97566421224542113332277444688852678999999975898531345562677879999999985998998718
Q ss_pred HHHCCC--CCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 776019--98466177666766008999348778888999999999999
Q gi|254780282|r 247 YIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 247 ~~~~~~--~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
+.+... +.+..+..+.+.+.++++++|++++..++++++|+++|.+.
T Consensus 161 ~~~~~~~~~~l~~~pl~~~~~~~~i~lv~~k~~~~~~~~~~~~~~l~~~ 209 (219)
T 3jv9_A 161 TALTENDHMLFSIIPFEGTPPSRRVVLAYRRNFVRPKALSAMKAAIMQS 209 (219)
T ss_dssp GGCCTTCTTTEEEECCSSSCCEEEEEEEEETTCSCHHHHHHHHHHHHTS
T ss_pred HHHHHCCCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8971142799899988899854599999989498899999999999973