HHsearch results for GI: 254780282 and protein with PDBid: 3jv9_A

>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=99.94  E-value=9.5e-28  Score=178.88  Aligned_cols=202  Identities=14%  Similarity=0.122  Sum_probs=157.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             22223332111000000000135667542000122222222---222222222222345654321111223455543321
Q gi|254780282|r   91 PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA  167 (299)
Q Consensus        91 ~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~~~~~~  167 (299)
                      .+|+||||++++++.+++|+++.+|+++||+|++++...+.   ...+.+|++|++|... +...+++...+++++++++
T Consensus         2 l~G~lrIG~~~s~~~~~lp~~l~~f~~~~P~v~l~i~~~~~~~l~~~l~~g~~D~~i~~~-~~~~~~~~~~~l~~e~~~l   80 (219)
T 3jv9_A            2 LEGAFKLGLIFTVAPYLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAE-PFQEPGIVTEPLYDEPFFV   80 (219)
T ss_dssp             -CCCEEEEEETTTHHHHHHHHHHHHHHHSTTCCEEEEEECHHHHHHHHHHTSSSEEEEES-SCCCTTEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEECC-CCCCCCEEEEEECCCCEEE
T ss_conf             802899997778899999999999999888928999988737777656169588875026-8777874898503310899


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC-CCCCCCCEEEECCCCHHHHHHHHHCCEEEEEH
Q ss_conf             12344321112222221100011235664332110002356652022-34321211453242001356787384233117
Q gi|254780282|r  168 YAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD  246 (299)
Q Consensus       168 v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~v~~g~Gia~lp~  246 (299)
                      +++++|+...+...+++++..++++.+............++...+.. ........+++++..+++++|.+|.|++++|.
T Consensus        81 v~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~G~Gi~~lP~  160 (219)
T 3jv9_A           81 IVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRHMVASGLAISVLPA  160 (219)
T ss_dssp             EEETTCGGGTSSSCCSSTTSSSCEEEECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHHHHHHHTSCEEEEEG
T ss_pred             EEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHCCCEEEECCH
T ss_conf             97566421224542113332277444688852678999999975898531345562677879999999985998998718


Q ss_pred             HHHCCC--CCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             776019--98466177666766008999348778888999999999999
Q gi|254780282|r  247 YIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK  293 (299)
Q Consensus       247 ~~~~~~--~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~  293 (299)
                      +.+...  +.+..+..+.+.+.++++++|++++..++++++|+++|.+.
T Consensus       161 ~~~~~~~~~~l~~~pl~~~~~~~~i~lv~~k~~~~~~~~~~~~~~l~~~  209 (219)
T 3jv9_A          161 TALTENDHMLFSIIPFEGTPPSRRVVLAYRRNFVRPKALSAMKAAIMQS  209 (219)
T ss_dssp             GGCCTTCTTTEEEECCSSSCCEEEEEEEEETTCSCHHHHHHHHHHHHTS
T ss_pred             HHHHHCCCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             8971142799899988899854599999989498899999999999973