HHsearch results for GI: 254780282 and protein with PDBid: 3kos_A

>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=99.97  E-value=2.7e-31  Score=199.46  Aligned_cols=200  Identities=16%  Similarity=0.196  Sum_probs=165.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32222223332111000000000135667542000122222222222222222222345654321111223455543321
Q gi|254780282|r   88 SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA  167 (299)
Q Consensus        88 ~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~~~~~~  167 (299)
                      .+..+|+|+||++++++..||+|.|.+|++.||+|+|++.+++...++.++++|++|..+.+ ..+++...+|+++++++
T Consensus         7 ~~~~~g~Lri~~~~sfa~~~L~p~L~~F~~~~P~i~v~l~~~~~~~~l~~~~~Dl~i~~~~~-~~~~~~~~~L~~~~~~~   85 (219)
T 3kos_A            7 TKQTQEKLKIGVVGTFAIGCLFPLLSDFKRSYPHIDLHISTHNNRVDPAAEGLDYTIRYGGG-AWHDTDAQYLCSALMSP   85 (219)
T ss_dssp             ----CEEEEEEEEHHHHHHTHHHHHHHHHHHCTTEEEEEEEECSCCCHHHHTCSEEEEEECS-CCTTEEEEEEEECCEEE
T ss_pred             CCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEEECCCC-CCCCCEEEEECCCCCEE
T ss_conf             79997709997819999999999999999988397999996575221102555899733787-88664367730244355


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCEEEEEHH
Q ss_conf             12344321112222221100011235664332110002356652022343212114532420013567873842331177
Q gi|254780282|r  168 YAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY  247 (299)
Q Consensus       168 v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gia~lp~~  247 (299)
                      ||+|++..+   ..+++||.++++|.....    ..+..|+.......+.+....++++++.+++++|.+|.||+++|.+
T Consensus        86 v~sp~~~~~---~~~~~dl~~~~li~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~av~~G~Giallp~~  158 (219)
T 3kos_A           86 LCSPTLASQ---IQTPADILKFPLLRSYRR----DEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQAGMGVAIAPVR  158 (219)
T ss_dssp             EBCHHHHTT---CSSGGGGGGSCEEEESCT----THHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHTTSCBEEEEGG
T ss_pred             ECCCCCCCC---CCCHHHHHHCHHEECCCC----CHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHCCEEEECCHH
T ss_conf             238320246---899999972321002676----4157777631666555665238972189999999959989988799


Q ss_pred             HHC---CCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             760---1998466177666766008999348778888999999999999850
Q gi|254780282|r  248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD  296 (299)
Q Consensus       248 ~~~---~~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~  296 (299)
                      ++.   +.|.++.++... .+...+|++|++++..++++++|+|||.+++++
T Consensus       159 ~v~~~l~~g~Lv~~~~~~-~~~~~~~l~~~~~~~~~~~~~~F~~~L~~~l~~  209 (219)
T 3kos_A          159 MFTHLLSSERIVQPFLTQ-IDLGSYWITRLQSRPETPAMREFSRWLTGVLHK  209 (219)
T ss_dssp             GCHHHHHTTSSBCCCCCC-BCSCEEEEEEETTSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCEEEECCCC-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf             999998789879746767-765619999969987898999999999999877