HHsearch results for GI: 254780282 and protein with PDBid: 3kos_A
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=99.97 E-value=2.7e-31 Score=199.46 Aligned_cols=200 Identities=16% Similarity=0.196 Sum_probs=165.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32222223332111000000000135667542000122222222222222222222345654321111223455543321
Q gi|254780282|r 88 SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA 167 (299)
Q Consensus 88 ~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~~~~~~ 167 (299)
.+..+|+|+||++++++..||+|.|.+|++.||+|+|++.+++...++.++++|++|..+.+ ..+++...+|+++++++
T Consensus 7 ~~~~~g~Lri~~~~sfa~~~L~p~L~~F~~~~P~i~v~l~~~~~~~~l~~~~~Dl~i~~~~~-~~~~~~~~~L~~~~~~~ 85 (219)
T 3kos_A 7 TKQTQEKLKIGVVGTFAIGCLFPLLSDFKRSYPHIDLHISTHNNRVDPAAEGLDYTIRYGGG-AWHDTDAQYLCSALMSP 85 (219)
T ss_dssp ----CEEEEEEEEHHHHHHTHHHHHHHHHHHCTTEEEEEEEECSCCCHHHHTCSEEEEEECS-CCTTEEEEEEEECCEEE
T ss_pred CCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEEECCCC-CCCCCEEEEECCCCCEE
T ss_conf 79997709997819999999999999999988397999996575221102555899733787-88664367730244355
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCEEEEEHH
Q ss_conf 12344321112222221100011235664332110002356652022343212114532420013567873842331177
Q gi|254780282|r 168 YAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 (299)
Q Consensus 168 v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gia~lp~~ 247 (299)
||+|++..+ ..+++||.++++|..... ..+..|+.......+.+....++++++.+++++|.+|.||+++|.+
T Consensus 86 v~sp~~~~~---~~~~~dl~~~~li~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~av~~G~Giallp~~ 158 (219)
T 3kos_A 86 LCSPTLASQ---IQTPADILKFPLLRSYRR----DEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQAGMGVAIAPVR 158 (219)
T ss_dssp EBCHHHHTT---CSSGGGGGGSCEEEESCT----THHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHTTSCBEEEEGG
T ss_pred ECCCCCCCC---CCCHHHHHHCHHEECCCC----CHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHCCEEEECCHH
T ss_conf 238320246---899999972321002676----4157777631666555665238972189999999959989988799
Q ss_pred HHC---CCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 760---1998466177666766008999348778888999999999999850
Q gi|254780282|r 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 248 ~~~---~~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
++. +.|.++.++... .+...+|++|++++..++++++|+|||.+++++
T Consensus 159 ~v~~~l~~g~Lv~~~~~~-~~~~~~~l~~~~~~~~~~~~~~F~~~L~~~l~~ 209 (219)
T 3kos_A 159 MFTHLLSSERIVQPFLTQ-IDLGSYWITRLQSRPETPAMREFSRWLTGVLHK 209 (219)
T ss_dssp GCHHHHHTTSSBCCCCCC-BCSCEEEEEEETTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEECCCC-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999998789879746767-765619999969987898999999999999877