HHsearch results for GI: 254780282 and protein with PDBid: 3oop_A
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=97.12 E-value=0.00059 Score=41.01 Aligned_cols=75 Identities=16% Similarity=0.133 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCEEEEECCCCCCCCCCC
Q ss_conf 88889999999999827--68999988289978999999999999588217976-------9946850013433222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-------ARGLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~-------~~~~~lT~~G~~l~~~a~~ 72 (299)
+++..++.++..+.+.+ +.+.=|+.+++++|+||+.|++||+. .++.|. ...+.+|+.|+.+++.+..
T Consensus 34 glt~~q~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~i~~L~~~---g~v~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 110 (143)
T 3oop_A 34 DVTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRK---ELIVREISTEDRRISLLSLTDKGRKETTELRD 110 (143)
T ss_dssp SSCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEEEC----CCSCEEEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 999999999999986899799999999896997999999999756---77434105899894476889899999999999
Q ss_pred CCCCCCH
Q ss_conf 2222101
Q gi|254780282|r 73 VYHKLET 79 (299)
Q Consensus 73 ~l~~~~~ 79 (299)
.......
T Consensus 111 ~~~~~~~ 117 (143)
T 3oop_A 111 IVEASCE 117 (143)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999