HHsearch results for GI: 254780282 and protein with PDBid: 3oxn_A
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=99.93 E-value=3.6e-26 Score=169.70 Aligned_cols=212 Identities=11% Similarity=0.003 Sum_probs=166.0
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01221001223222222333211100000000013566754200012222222--222-222222222234565432111
Q gi|254780282|r 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN--KDI-DISMDYADCAIRLRKPIQSSS 154 (299)
Q Consensus 78 ~~~~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~--~~~-~l~~~~~Di~i~~~~~~~~~~ 154 (299)
+++.+.....+...+|+++||++++++..++|+++.+|+++||+++|++...+ ... .|..|++|++|... +..+++
T Consensus 4 ~~~~~~~~FdP~~~~~~~rI~~~~~~~~~~lp~ll~~l~~~~P~v~i~l~~~~~~~~~~~L~~g~iDl~I~~~-~~~~~~ 82 (241)
T 3oxn_A 4 RQLLSPVEFDPQQCDQTFTIATTDYAMQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRP-TGPVEP 82 (241)
T ss_dssp ----------CCSCCCEEEEEECSHHHHHTHHHHHHHHHHHCTTCEEEEEECCGGGHHHHHHTSCCSEEEECC-SSCCTT
T ss_pred HHHCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECC-CCCCCC
T ss_conf 8843999989200686899997379999999999999999886928999979879999999759854222026-787410
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHH
Q ss_conf 12234555433211234432111222222110001123566433211000235665202234321211453242001356
Q gi|254780282|r 155 LIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 (299)
Q Consensus 155 l~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 234 (299)
+..++|++++++++++++||...+ +++++|+.+++++.+..... ...+........+. +...++++++.+++.+
T Consensus 83 l~~~~l~~~~~v~v~~~~HPl~~~-~~t~~dl~~~~~v~~~~~~~----~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~l 156 (241)
T 3oxn_A 83 LRSEILGRVGVLCLLSKQHPLANQ-EMSLDDYLSHPHAMIAISDG----VKALIEQALIDKPQ-RKMVLRAYHLEAALAI 156 (241)
T ss_dssp EEEEEEECCCEEEEEETTSGGGGS-CCCHHHHHTSEEEECSCCHH----HHHHHHHHSTTSCC-CEEEEECSSTHHHHHH
T ss_pred CCCCCCCCCCCEEECCCCCHHHHC-CCCHHHHHHCCEEEEECCCC----CCHHHHHHHHHCCC-CCCEEEECCHHHHHHH
T ss_conf 113543223640223766503202-58899995298699957998----62399999996799-9855996789999999
Q ss_pred HHHHCCEEEEEHHHHC---CCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 7873842331177760---1998466177666766008999348778888999999999999850
Q gi|254780282|r 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 235 v~~g~Gia~lp~~~~~---~~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
|..|.|++++|.+++. +.+.++.+..+.+.++++++++|+++...+|+.++|.+.+.+.+++
T Consensus 157 v~~~~~i~ilP~~~~~~~~~~~~L~~~plp~~~p~~~~~l~Wh~~~~~~pa~~wlR~~i~e~~~~ 221 (241)
T 3oxn_A 157 VDTLPIIITVPADLAYLVAERYDLVVKPLPFQFTPFDYSMIWHARCEHSPAQEWLRSVVREECSR 221 (241)
T ss_dssp C--CCCEEEEEHHHHHHHHHHTTEEEECCSSCCCCCCEEEEEEGGGTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCEEEEHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 97599799879999998865399699848999897689999799988998999999999999999