Query gi|254780282|ref|YP_003064695.1| putative transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 299
No_of_seqs 183 out of 20759
Neff 10.3
Searched_HMMs 23785
Date Mon May 30 09:05:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780282.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hhg_A Transcriptional regulat 100.0 0 0 362.8 11.3 291 1-296 1-295 (306)
2 1al3_A Cys regulon transcripti 100.0 0 0 356.5 8.5 287 3-293 1-294 (324)
3 1ixc_A CBNR, LYSR-type regulat 100.0 0 0 349.8 13.6 290 3-296 1-294 (294)
4 3fxq_A LYSR type regulator of 100.0 0 0 346.5 14.2 289 3-296 2-297 (305)
5 3mz1_A Putative transcriptiona 100.0 0 0 352.4 7.8 290 6-296 1-293 (300)
6 3fzv_A Probable transcriptiona 100.0 0 0 343.3 11.0 290 1-296 1-300 (306)
7 2h98_A HTH-type transcriptiona 100.0 0 0 337.0 10.9 290 3-297 1-296 (313)
8 2h9b_A HTH-type transcriptiona 100.0 0 0 333.8 11.3 289 3-296 1-295 (312)
9 2esn_A Probable transcriptiona 100.0 0 0 324.6 12.9 288 1-297 7-304 (310)
10 1uth_A LYSR-type regulatory pr 100.0 0 0 327.4 9.8 288 3-296 14-308 (315)
11 3isp_A HTH-type transcriptiona 100.0 0 0 322.3 10.0 285 1-297 4-292 (303)
12 2hxr_A HTH-type transcriptiona 100.0 1.1E-33 4.4E-38 213.4 9.4 228 65-297 2-232 (238)
13 2qsx_A Putative transcriptiona 100.0 5.5E-32 2.3E-36 203.4 7.6 212 76-297 3-217 (218)
14 3kos_A HTH-type transcriptiona 100.0 2.7E-31 1.1E-35 199.5 8.7 200 88-296 7-209 (219)
15 3hhf_B Transcriptional regulat 100.0 5E-31 2.1E-35 197.9 5.8 203 89-296 3-209 (213)
16 2fyi_A HTH-type transcriptiona 100.0 8.7E-30 3.7E-34 190.7 9.6 208 82-293 3-215 (228)
17 1b9m_A Protein (mode); DNA-bin 100.0 6E-30 2.5E-34 191.6 3.1 130 2-131 19-157 (265)
18 3ho7_A OXYR; beta-alpha-barrel 100.0 7.9E-29 3.3E-33 185.1 6.4 207 84-294 2-214 (232)
19 1i6a_A OXYR, hydrogen peroxide 99.9 3.1E-28 1.3E-32 181.7 7.0 202 90-296 2-209 (219)
20 3jv9_A OXYR, transcriptional r 99.9 9.5E-28 4E-32 178.9 6.1 202 91-293 2-209 (219)
21 2ql3_A Probable transcriptiona 99.9 1.2E-26 5E-31 172.5 7.7 198 90-293 2-208 (209)
22 3oxn_A Putative transcriptiona 99.9 3.6E-26 1.5E-30 169.7 9.7 212 78-296 4-221 (241)
23 3fd3_A Chromosome replication 99.9 5.4E-27 2.3E-31 174.5 5.1 198 92-299 1-205 (208)
24 2ijl_A AGR_C_4647P, molybdenum 99.8 6.3E-20 2.6E-24 133.6 5.6 80 3-82 24-108 (135)
25 1twy_A ABC transporter, peripl 98.6 7.5E-08 3.2E-12 63.6 6.3 198 92-296 27-266 (290)
26 3cta_A Riboflavin kinase; stru 98.4 9.1E-08 3.8E-12 63.1 2.3 110 1-117 1-123 (230)
27 2wte_A CSA3; antiviral protein 98.3 9.2E-07 3.9E-11 57.3 6.3 81 3-86 150-234 (244)
28 2x4h_A Hypothetical protein SS 97.9 1.9E-05 8E-10 49.7 5.5 75 3-80 11-91 (139)
29 2fxa_A Protease production reg 97.7 5.8E-05 2.4E-09 46.9 6.0 74 2-78 45-127 (207)
30 1y0u_A Arsenical resistance op 97.7 0.00013 5.3E-09 44.9 7.4 60 5-67 31-90 (96)
31 3nrv_A Putative transcriptiona 97.6 5.9E-05 2.5E-09 46.8 4.9 75 2-79 37-120 (148)
32 1on2_A Transcriptional regulat 97.6 4.6E-05 1.9E-09 47.4 4.0 72 6-80 8-83 (142)
33 3cjn_A Transcriptional regulat 97.6 4.7E-05 2E-09 47.4 3.9 78 2-80 49-133 (162)
34 2pex_A Transcriptional regulat 97.5 0.00021 8.7E-09 43.7 6.1 73 2-77 44-125 (153)
35 3bj6_A Transcriptional regulat 97.4 0.00017 7.1E-09 44.2 5.1 72 2-76 37-117 (152)
36 3e6m_A MARR family transcripti 97.4 0.00014 5.7E-09 44.7 4.6 75 2-79 50-133 (161)
37 3eco_A MEPR; mutlidrug efflux 97.4 0.00016 6.8E-09 44.3 4.9 78 2-80 28-114 (139)
38 3nqo_A MARR-family transcripti 97.4 0.00012 5.2E-09 44.9 4.1 74 2-78 38-122 (189)
39 3ech_A MEXR, multidrug resista 97.4 0.00011 4.5E-09 45.3 3.6 74 2-78 34-116 (142)
40 3bpv_A Transcriptional regulat 97.3 0.00032 1.3E-08 42.6 5.6 78 2-80 26-110 (138)
41 2fbh_A Transcriptional regulat 97.3 0.0002 8.5E-09 43.7 4.5 74 2-78 34-117 (146)
42 3g3z_A NMB1585, transcriptiona 97.3 0.00028 1.2E-08 42.9 5.1 75 2-79 28-111 (145)
43 1lj9_A Transcriptional regulat 97.3 8.2E-05 3.5E-09 46.0 2.3 78 2-80 26-110 (144)
44 2nyx_A Probable transcriptiona 97.3 0.00023 9.6E-09 43.4 4.2 75 2-77 42-123 (168)
45 2nnn_A Probable transcriptiona 97.2 0.00027 1.1E-08 43.0 4.2 75 2-79 35-118 (140)
46 2qq9_A Diphtheria toxin repres 97.2 0.00032 1.3E-08 42.5 4.4 73 6-81 10-86 (226)
47 3boq_A Transcriptional regulat 97.2 0.00015 6.3E-09 44.5 2.5 73 2-77 44-126 (160)
48 2fbk_A Transcriptional regulat 97.1 0.00015 6.5E-09 44.4 2.3 73 2-77 66-150 (181)
49 1z91_A Organic hydroperoxide r 97.1 0.00097 4.1E-08 39.8 6.4 75 1-78 36-119 (147)
50 2qww_A Transcriptional regulat 97.1 0.00048 2E-08 41.6 4.8 68 2-72 38-116 (154)
51 3oop_A LIN2960 protein; protei 97.1 0.00059 2.5E-08 41.0 5.2 75 2-79 34-117 (143)
52 1fx7_A Iron-dependent represso 97.1 0.00059 2.5E-08 41.0 4.9 73 6-81 10-86 (230)
53 1r1t_A Transcriptional repress 97.1 0.0007 2.9E-08 40.6 5.1 56 4-60 45-101 (122)
54 3deu_A Transcriptional regulat 97.0 0.00061 2.6E-08 40.9 4.7 75 2-79 50-134 (166)
55 2eth_A Transcriptional regulat 97.0 0.00043 1.8E-08 41.8 3.7 72 2-76 41-121 (154)
56 2fa5_A Transcriptional regulat 97.0 0.00053 2.2E-08 41.3 3.8 72 2-76 46-126 (162)
57 3hsr_A HTH-type transcriptiona 97.0 0.00044 1.9E-08 41.7 3.3 73 2-77 33-114 (140)
58 2gxg_A 146AA long hypothetical 96.9 0.00086 3.6E-08 40.1 4.7 77 2-79 34-116 (146)
59 1ub9_A Hypothetical protein PH 96.9 0.0008 3.4E-08 40.2 4.5 69 4-72 15-89 (100)
60 3kp7_A Transcriptional regulat 96.9 0.00054 2.3E-08 41.2 3.5 76 2-78 35-118 (151)
61 2bv6_A MGRA, HTH-type transcri 96.9 0.00067 2.8E-08 40.7 3.8 75 2-79 34-117 (142)
62 2zkz_A Transcriptional repress 96.9 0.002 8.5E-08 37.9 6.1 53 4-58 26-80 (99)
63 2fbi_A Probable transcriptiona 96.9 0.0014 5.8E-08 38.9 5.2 75 2-77 33-114 (142)
64 3f3x_A Transcriptional regulat 96.9 0.00048 2E-08 41.6 2.8 73 2-77 34-114 (144)
65 2ovg_A Phage lambda CRO; trans 96.8 0.0014 5.7E-08 38.9 5.1 48 14-75 11-60 (66)
66 1jgs_A Multiple antibiotic res 96.8 0.0026 1.1E-07 37.3 6.5 72 2-74 31-109 (138)
67 1s3j_A YUSO protein; structura 96.8 0.0012 4.9E-08 39.3 4.5 73 2-77 34-115 (155)
68 2h09_A Transcriptional regulat 96.8 0.0014 5.7E-08 38.9 4.8 73 6-81 40-116 (155)
69 3k0l_A Repressor protein; heli 96.8 0.00053 2.2E-08 41.3 2.4 77 1-80 42-127 (162)
70 3cdh_A Transcriptional regulat 96.8 0.0011 4.7E-08 39.4 4.0 76 2-80 40-124 (155)
71 2a61_A Transcriptional regulat 96.7 0.0017 7.3E-08 38.3 4.9 75 2-77 30-111 (145)
72 1r1u_A CZRA, repressor protein 96.7 0.0028 1.2E-07 37.1 5.9 54 6-60 27-81 (106)
73 2frh_A SARA, staphylococcal ac 96.7 0.00078 3.3E-08 40.3 2.9 66 2-70 34-110 (127)
74 3b73_A PHIH1 repressor-like pr 96.7 0.0015 6.5E-08 38.6 4.3 64 3-69 11-79 (111)
75 3cuo_A Uncharacterized HTH-typ 96.7 0.0023 9.8E-08 37.6 5.1 53 4-57 23-77 (99)
76 2pij_A Prophage PFL 6 CRO; tra 96.6 0.0019 8.1E-08 38.0 4.6 48 14-74 10-59 (67)
77 3bro_A Transcriptional regulat 96.6 0.0015 6.5E-08 38.6 4.1 74 2-78 31-115 (141)
78 2hr3_A Probable transcriptiona 96.6 0.0014 6E-08 38.8 3.7 72 2-76 32-113 (147)
79 2dbb_A Putative HTH-type trans 96.6 0.0051 2.1E-07 35.6 6.5 44 1-44 5-50 (151)
80 2rdp_A Putative transcriptiona 96.5 0.0022 9.4E-08 37.7 4.3 73 2-77 39-120 (150)
81 3hrs_A Metalloregulator SCAR; 96.5 0.0024 1E-07 37.5 4.2 71 8-81 8-82 (214)
82 3bdd_A Regulatory protein MARR 96.5 0.0062 2.6E-07 35.1 6.2 74 2-78 28-111 (142)
83 3cvg_A Putative metal binding 96.5 0.0048 2E-07 35.8 5.6 198 94-292 21-260 (294)
84 3bja_A Transcriptional regulat 96.3 0.0017 7.3E-08 38.3 2.5 75 2-77 30-111 (139)
85 1u2w_A CADC repressor, cadmium 96.2 0.0086 3.6E-07 34.3 6.0 52 4-56 41-94 (122)
86 2cfx_A HTH-type transcriptiona 96.2 0.01 4.4E-07 33.8 6.2 46 1-47 1-48 (144)
87 2ia0_A Putative HTH-type trans 96.1 0.01 4.3E-07 33.8 5.9 46 1-47 13-60 (171)
88 1p4x_A Staphylococcal accessor 96.0 0.0066 2.8E-07 34.9 4.6 73 2-75 31-112 (250)
89 3jw4_A Transcriptional regulat 96.0 0.0019 7.8E-08 38.1 1.7 79 2-80 38-124 (148)
90 3onq_A Regulator of polyketide 96.0 0.015 6.2E-07 32.9 6.3 13 3-15 4-16 (262)
91 2p5v_A Transcriptional regulat 96.0 0.015 6.5E-07 32.8 6.1 44 1-44 6-51 (162)
92 3fm5_A Transcriptional regulat 95.9 0.0035 1.5E-07 36.5 2.8 74 3-79 37-120 (150)
93 2e1c_A Putative HTH-type trans 95.9 0.015 6.3E-07 32.9 6.0 43 2-44 24-68 (171)
94 2w25_A Probable transcriptiona 95.8 0.021 9E-07 32.0 6.2 44 1-44 1-48 (150)
95 2d1h_A ST1889, 109AA long hypo 95.8 0.018 7.7E-07 32.4 5.8 66 2-70 18-93 (109)
96 1atg_A MODA, periplasmic molyb 95.7 0.032 1.4E-06 31.0 7.0 192 95-293 2-216 (231)
97 3f6v_A Possible transcriptiona 95.7 0.0088 3.7E-07 34.2 3.9 59 4-63 57-118 (151)
98 1bia_A BIRA bifunctional prote 95.7 0.047 2E-06 30.0 7.6 66 1-68 1-69 (321)
99 1p4x_A Staphylococcal accessor 95.6 0.0068 2.8E-07 34.9 3.1 28 54-81 48-75 (250)
100 2oqg_A Possible transcriptiona 95.5 0.026 1.1E-06 31.5 6.0 59 4-63 20-81 (114)
101 2o1m_A Probable amino-acid ABC 95.4 0.024 1E-06 31.7 5.5 192 89-294 12-227 (258)
102 2jsc_A Transcriptional regulat 95.4 0.01 4.3E-07 33.9 3.4 53 4-57 20-73 (118)
103 2hxw_A Major antigenic peptide 95.3 0.017 7.1E-07 32.6 4.4 194 95-293 3-218 (237)
104 1g2h_A Transcriptional regulat 95.2 0.011 4.5E-07 33.7 3.0 35 7-41 23-57 (61)
105 3jth_A Transcription activator 95.2 0.019 7.9E-07 32.3 4.3 50 6-56 24-74 (98)
106 1amf_A Molybdate transport pro 94.9 0.035 1.5E-06 30.7 4.9 198 92-293 2-219 (233)
107 2cyy_A Putative HTH-type trans 94.8 0.079 3.3E-06 28.7 6.6 42 3-44 5-48 (151)
108 2cg4_A Regulatory protein ASNC 94.8 0.073 3.1E-06 28.9 6.4 42 3-44 6-49 (152)
109 1i1g_A Transcriptional regulat 94.8 0.059 2.5E-06 29.4 5.9 42 3-44 2-45 (141)
110 3f6o_A Probable transcriptiona 94.8 0.032 1.3E-06 31.0 4.5 50 6-56 19-69 (118)
111 3c57_A Two component transcrip 94.5 0.11 4.5E-06 27.9 6.7 46 3-48 28-73 (95)
112 2iee_A ORF2, probable ABC tran 94.3 0.14 5.7E-06 27.3 6.9 187 92-295 20-232 (271)
113 2vha_A Periplasmic binding tra 94.3 0.15 6.4E-06 27.0 7.2 189 91-294 15-233 (287)
114 1xt8_A Putative amino-acid tra 94.1 0.13 5.3E-06 27.5 6.3 185 91-294 42-250 (292)
115 3lr1_A Tungstate ABC transport 93.9 0.086 3.6E-06 28.5 5.2 52 92-144 4-59 (236)
116 1uly_A Hypothetical protein PH 93.9 0.088 3.7E-06 28.4 5.3 39 7-45 22-61 (192)
117 2pn6_A ST1022, 150AA long hypo 93.9 0.084 3.5E-06 28.5 5.1 42 3-44 1-44 (150)
118 3kn3_A Putative periplasmic pr 93.9 0.065 2.7E-06 29.2 4.5 53 93-146 5-61 (242)
119 2ia2_A Putative transcriptiona 93.8 0.044 1.8E-06 30.2 3.5 54 6-62 22-78 (265)
120 2kko_A Possible transcriptiona 93.7 0.038 1.6E-06 30.5 3.1 49 8-57 28-77 (108)
121 2p4w_A Transcriptional regulat 93.5 0.14 5.7E-06 27.3 5.6 37 8-44 18-55 (202)
122 3h7m_A Sensor protein; histidi 93.5 0.33 1.4E-05 25.1 7.6 184 91-294 9-215 (234)
123 3df8_A Possible HXLR family tr 93.4 0.04 1.7E-06 30.4 2.7 64 9-75 31-101 (111)
124 3i4p_A Transcriptional regulat 93.4 0.11 4.8E-06 27.8 5.1 42 3-44 1-44 (162)
125 1sfx_A Conserved hypothetical 93.3 0.17 7E-06 26.8 5.8 43 2-44 17-61 (109)
126 2hzt_A Putative HTH-type trans 93.3 0.066 2.8E-06 29.1 3.8 68 5-75 15-90 (107)
127 3gzg_A Molybdate-binding perip 93.3 0.059 2.5E-06 29.4 3.5 200 90-293 20-239 (253)
128 3hv1_A Polar amino acid ABC up 93.3 0.34 1.4E-05 25.0 7.4 184 92-288 20-227 (268)
129 1je8_A Nitrate/nitrite respons 93.1 0.18 7.5E-06 26.6 5.8 46 3-48 22-67 (82)
130 2f2e_A PA1607; transcription f 93.1 0.066 2.8E-06 29.1 3.5 66 5-73 25-96 (146)
131 3mpk_A Virulence sensor protei 93.0 0.34 1.4E-05 25.0 7.1 180 93-291 32-235 (267)
132 2q88_A EHUB, putative ABC tran 92.9 0.4 1.7E-05 24.6 8.1 190 91-293 11-224 (257)
133 1j5y_A Transcriptional regulat 92.8 0.35 1.5E-05 24.9 6.9 59 1-61 13-78 (187)
134 2g7u_A Transcriptional regulat 92.7 0.025 1.1E-06 31.6 0.8 52 8-62 20-71 (257)
135 2pvu_A ARTJ; basic amino acid 92.6 0.44 1.8E-05 24.4 7.9 187 89-290 38-247 (272)
136 3muq_A Uncharacterized conserv 92.5 0.24 9.9E-06 25.9 5.6 54 92-146 4-61 (237)
137 1x3u_A Transcriptional regulat 92.4 0.2 8.6E-06 26.3 5.3 46 3-48 17-62 (79)
138 2jpc_A SSRB; DNA binding prote 92.4 0.19 8.1E-06 26.4 5.1 44 5-48 1-44 (61)
139 1r7j_A Conserved hypothetical 92.3 0.094 4E-06 28.2 3.4 67 13-82 16-82 (95)
140 1p4w_A RCSB; solution structur 92.2 0.47 2E-05 24.2 6.9 46 3-48 35-80 (99)
141 1l3l_A Transcriptional activat 92.1 0.34 1.4E-05 25.0 6.1 23 29-51 16-38 (234)
142 2q0o_A Probable transcriptiona 92.0 0.46 1.9E-05 24.3 6.6 22 30-51 19-40 (236)
143 1rzs_A Antirepressor, regulato 92.0 0.12 5E-06 27.7 3.6 25 13-37 6-30 (61)
144 1z05_A Transcriptional regulat 91.9 0.18 7.6E-06 26.6 4.5 40 5-44 39-80 (429)
145 2o0m_A Transcriptional regulat 91.9 0.022 9.1E-07 31.9 -0.3 70 13-85 28-102 (345)
146 2krf_A Transcriptional regulat 91.8 0.46 1.9E-05 24.3 6.5 46 3-48 13-58 (73)
147 1z6r_A MLC protein; transcript 91.7 0.19 8.1E-06 26.5 4.4 40 5-44 16-57 (406)
148 2fsw_A PG_0823 protein; alpha- 91.7 0.065 2.7E-06 29.2 2.0 55 16-73 37-99 (107)
149 2v25_A Major cell-binding fact 91.6 0.59 2.5E-05 23.6 8.2 187 92-294 37-246 (259)
150 1z7u_A Hypothetical protein EF 91.5 0.15 6.2E-06 27.1 3.7 67 5-74 23-97 (112)
151 3e7l_A Transcriptional regulat 91.5 0.24 1E-05 25.9 4.8 32 10-41 24-56 (63)
152 1fse_A GERE; helix-turn-helix 91.0 0.49 2.1E-05 24.1 5.9 46 3-48 12-57 (74)
153 3c3w_A Two component transcrip 90.9 0.69 2.9E-05 23.2 6.6 20 109-128 63-82 (225)
154 2qlz_A Transcription factor PF 90.8 0.066 2.8E-06 29.2 1.3 48 6-54 13-61 (232)
155 1eto_A FIS, factor for inversi 90.8 0.15 6.3E-06 27.1 3.1 32 10-41 63-95 (98)
156 1xs5_A 29 kDa protein, membran 90.6 0.27 1.1E-05 25.6 4.2 191 94-297 4-227 (241)
157 1ntc_A Protein (nitrogen regul 90.5 0.14 6E-06 27.2 2.8 30 13-42 59-89 (91)
158 1umq_A Photosynthetic apparatu 90.4 0.16 6.6E-06 27.0 3.0 31 10-40 46-77 (81)
159 3clo_A Transcriptional regulat 90.4 0.75 3.2E-05 23.0 6.4 13 278-290 197-209 (258)
160 2rnj_A Response regulator prot 90.3 0.43 1.8E-05 24.4 5.1 46 3-48 30-75 (91)
161 3gxa_A Outer membrane lipoprot 90.1 0.25 1E-05 25.8 3.8 196 90-296 20-246 (275)
162 3bd1_A CRO protein; transcript 89.5 0.39 1.7E-05 24.6 4.4 29 12-40 6-34 (79)
163 2gqq_A Leucine-responsive regu 89.4 0.041 1.7E-06 30.3 -0.6 43 2-44 10-54 (163)
164 3ir1_A Outer membrane lipoprot 89.4 0.46 1.9E-05 24.3 4.7 191 94-296 2-224 (245)
165 1yyv_A Putative transcriptiona 89.3 0.12 5.2E-06 27.6 1.7 56 16-74 47-110 (131)
166 1wdn_A GLNBP, glutamine bindin 88.9 1 4.2E-05 22.3 7.7 166 108-293 28-206 (226)
167 1ixh_A Phosphate-binding prote 88.1 0.92 3.9E-05 22.5 5.5 74 93-169 2-83 (321)
168 3ksx_A Nitrate transport prote 87.9 1.2 4.9E-05 21.9 7.3 193 91-293 27-238 (324)
169 3k2z_A LEXA repressor; winged 87.7 1.2 5.1E-05 21.8 6.4 44 1-44 1-51 (196)
170 3klo_A Transcriptional regulat 86.7 0.73 3.1E-05 23.1 4.3 10 117-126 79-88 (225)
171 3k4u_A Binding component of AB 86.0 1.5 6.3E-05 21.3 8.3 187 91-294 3-213 (245)
172 3f8m_A GNTR-family protein tra 85.9 0.84 3.6E-05 22.7 4.3 39 19-60 38-76 (248)
173 1mkm_A ICLR transcriptional re 85.6 0.38 1.6E-05 24.7 2.5 54 6-62 9-66 (249)
174 2o0y_A Transcriptional regulat 84.6 0.15 6.2E-06 27.1 -0.1 52 8-62 26-81 (260)
175 1ku9_A Hypothetical protein MJ 84.2 1.8 7.7E-05 20.8 6.3 59 3-64 24-92 (152)
176 2x26_A Periplasmic aliphatic s 84.1 0.94 3.9E-05 22.5 3.9 191 94-293 4-212 (308)
177 3dp7_A SAM-dependent methyltra 83.9 1.4 5.9E-05 21.4 4.7 60 7-69 37-99 (363)
178 3h5o_A Transcriptional regulat 82.6 0.32 1.3E-05 25.2 1.0 110 19-147 6-126 (339)
179 3k2d_A ABC-type metal ION tran 81.9 1 4.2E-05 22.3 3.3 33 264-296 197-230 (237)
180 2r3s_A Uncharacterized protein 81.6 1.5 6.3E-05 21.3 4.1 62 7-71 28-90 (335)
181 3kjx_A Transcriptional regulat 80.7 0.4 1.7E-05 24.6 0.9 22 19-40 12-33 (344)
182 1x19_A CRTF-related protein; m 80.3 2.4 0.0001 20.1 4.8 60 7-69 53-113 (359)
183 2qvo_A Uncharacterized protein 80.2 0.88 3.7E-05 22.6 2.5 59 19-78 32-92 (95)
184 3kbr_A Cyclohexadienyl dehydra 80.2 2.6 0.00011 19.9 9.5 187 91-294 13-222 (239)
185 1jhf_A LEXA repressor; LEXA SO 79.2 2.8 0.00012 19.7 6.4 44 1-44 1-53 (202)
186 1k78_A Paired box protein PAX5 79.2 2.8 0.00012 19.7 5.3 60 8-67 39-99 (149)
187 3fx3_A Cyclic nucleotide-bindi 78.2 1.7 7E-05 21.0 3.5 21 45-65 31-51 (237)
188 1xsv_A Hypothetical UPF0122 pr 78.2 2.3 9.8E-05 20.2 4.2 37 9-45 32-69 (113)
189 3kzg_A Arginine 3RD transport 77.7 3.1 0.00013 19.4 8.9 141 92-248 2-161 (237)
190 1pb7_A N-methyl-D-aspartate re 77.5 2.7 0.00011 19.8 4.4 194 90-290 38-271 (292)
191 1pdn_C Protein (PRD paired); p 77.4 3.2 0.00013 19.4 5.3 57 13-69 29-86 (128)
192 2p8t_A Hypothetical protein PH 77.1 1.6 6.9E-05 21.1 3.2 60 16-78 29-88 (200)
193 2o38_A Hypothetical protein; a 76.9 1.2 5.1E-05 21.8 2.5 21 19-39 55-75 (120)
194 1hlv_A CENP-B, major centromer 74.9 3.7 0.00016 19.0 6.2 42 3-44 8-52 (131)
195 1ii5_A Hypothetical protein SL 74.6 3.8 0.00016 19.0 5.4 166 108-290 31-211 (233)
196 2o20_A Catabolite control prot 74.1 0.48 2E-05 24.1 -0.2 22 19-40 7-28 (332)
197 2hoe_A N-acetylglucosamine kin 73.8 2.4 0.0001 20.1 3.3 34 10-44 25-60 (380)
198 1yio_A Response regulatory pro 73.1 4.1 0.00017 18.7 6.0 21 109-129 64-84 (208)
199 3lmm_A Uncharacterized protein 72.7 4.2 0.00018 18.7 5.7 12 58-69 223-234 (583)
200 3bil_A Probable LACI-family tr 72.4 0.55 2.3E-05 23.8 -0.2 22 19-40 10-31 (348)
201 1i3j_A I-TEVI, intron-associat 71.6 2.8 0.00012 19.7 3.2 23 17-39 83-105 (116)
202 3i6v_A Periplasmic His/Glu/Gln 70.3 4.8 0.0002 18.4 6.5 174 94-294 6-202 (232)
203 3lst_A CALO1 methyltransferase 69.1 4.8 0.0002 18.4 4.0 61 7-70 44-105 (348)
204 1p99_A Hypothetical protein PG 68.8 5.2 0.00022 18.2 7.4 50 92-144 38-91 (295)
205 2hsg_A Glucose-resistance amyl 68.3 1.3 5.5E-05 21.7 0.9 22 19-40 4-25 (332)
206 2ict_A Antitoxin HIGA; helix-t 68.2 5.3 0.00022 18.1 4.4 47 1-48 1-63 (94)
207 3mcz_A O-methyltransferase; ad 67.6 3.5 0.00015 19.2 3.0 60 9-71 48-107 (352)
208 1uxc_A FRUR (1-57), fructose r 67.1 3.9 0.00016 18.9 3.2 22 19-40 2-23 (65)
209 1jko_C HIN recombinase, DNA-in 66.2 5.5 0.00023 18.0 3.8 37 3-39 6-43 (52)
210 2eby_A Putative HTH-type trans 64.8 6.2 0.00026 17.7 3.9 22 18-39 25-46 (113)
211 3iwf_A Transcription regulator 64.2 6 0.00025 17.8 3.7 28 14-41 32-59 (107)
212 2o8x_A Probable RNA polymerase 62.8 6.8 0.00029 17.5 4.1 37 12-48 26-62 (70)
213 2v79_A DNA replication protein 62.2 7 0.00029 17.4 4.8 51 2-52 29-86 (135)
214 3d1n_I POU domain, class 6, tr 62.2 5.5 0.00023 18.0 3.2 32 3-39 1-32 (151)
215 3by6_A Predicted transcription 61.6 6.9 0.00029 17.5 3.6 41 19-61 37-77 (126)
216 3neu_A LIN1836 protein; struct 61.0 7.1 0.0003 17.4 3.6 41 19-61 39-79 (125)
217 2w48_A Sorbitol operon regulat 60.3 7.4 0.00031 17.3 3.6 25 16-40 20-44 (315)
218 2vn2_A DNAD, chromosome replic 60.2 7.6 0.00032 17.2 5.7 43 2-44 29-78 (128)
219 2gau_A Transcriptional regulat 59.9 5.2 0.00022 18.1 2.7 15 223-237 217-231 (232)
220 1qpz_A PURA, protein (purine n 59.8 5.5 0.00023 18.0 2.8 22 19-40 2-23 (340)
221 3e3m_A Transcriptional regulat 59.8 0.98 4.1E-05 22.3 -1.0 22 19-40 14-35 (355)
222 2o3f_A Putative HTH-type trans 59.7 7.6 0.00032 17.2 3.5 26 15-40 37-62 (111)
223 2k27_A Paired box protein PAX- 59.3 6.1 0.00026 17.7 3.0 39 4-43 29-67 (159)
224 1x57_A Endothelial differentia 59.1 7.9 0.00033 17.1 5.6 38 14-51 23-71 (91)
225 3dbi_A Sugar-binding transcrip 59.0 1.6 6.5E-05 21.2 -0.1 22 19-40 5-26 (338)
226 2ek5_A Predicted transcription 58.4 6.6 0.00028 17.5 3.1 42 19-62 30-71 (129)
227 1aoy_A Arginine repressor; DNA 56.9 5.1 0.00022 18.2 2.3 36 6-41 9-53 (78)
228 1us5_A Putative GLUR0 ligand b 56.5 7 0.0003 17.4 2.9 94 94-192 20-135 (314)
229 1hw1_A FADR, fatty acid metabo 56.2 6.8 0.00029 17.5 2.8 42 19-62 33-74 (239)
230 2a6c_A Helix-turn-helix motif; 55.9 6.5 0.00027 17.6 2.7 30 10-39 22-53 (83)
231 2jn6_A Protein CGL2762, transp 54.3 9.6 0.0004 16.6 3.7 24 18-41 24-47 (97)
232 3edp_A LIN2111 protein; APC883 53.7 7.8 0.00033 17.1 2.8 41 19-61 35-75 (236)
233 1s7o_A Hypothetical UPF0122 pr 53.7 9.8 0.00041 16.6 5.1 31 15-45 36-66 (113)
234 1j9i_A GPNU1 DBD;, terminase s 52.8 4.3 0.00018 18.6 1.3 35 19-58 4-38 (68)
235 2a5s_A N-methyl-D-aspartate re 52.4 10 0.00043 16.4 6.0 69 223-291 190-265 (284)
236 2pyy_A Ionotropic glutamate re 51.6 11 0.00044 16.4 4.4 168 107-290 26-207 (228)
237 2p5k_A Arginine repressor; DNA 50.3 7.4 0.00031 17.3 2.2 15 27-41 34-48 (64)
238 2kfs_A Conserved hypothetical 50.1 9.1 0.00038 16.7 2.7 22 19-40 33-54 (148)
239 3bdn_A Lambda repressor; repre 48.9 12 0.00049 16.1 3.9 34 6-39 16-52 (236)
240 3h5t_A Transcriptional regulat 47.9 11 0.00046 16.3 2.8 22 19-40 11-32 (366)
241 3cec_A Putative antidote prote 47.7 12 0.00051 16.0 3.9 22 18-39 32-53 (104)
242 1b4a_A Arginine repressor; hel 47.1 7 0.00029 17.4 1.7 19 23-41 30-48 (149)
243 1lva_A Selenocysteine-specific 47.1 8.6 0.00036 16.9 2.1 43 19-61 19-61 (258)
244 2w7n_A TRFB transcriptional re 46.6 13 0.00053 15.9 4.2 35 11-45 28-62 (101)
245 1sw5_A Osmoprotection protein 46.3 13 0.00054 15.9 4.7 55 91-146 4-63 (275)
246 3l4g_A Phenylalanyl-tRNA synth 45.8 3.5 0.00015 19.1 0.0 50 22-71 25-75 (508)
247 3thi_A Protein (thiaminase I); 45.7 6.2 0.00026 17.7 1.2 24 270-293 265-288 (371)
248 2b0l_A GTP-sensing transcripti 45.1 13 0.00056 15.8 3.7 25 20-44 46-70 (102)
249 1v4r_A Transcriptional repress 44.6 3.2 0.00013 19.4 -0.4 40 19-60 37-76 (102)
250 3ctp_A Periplasmic binding pro 44.6 3.8 0.00016 19.0 0.0 22 19-40 4-25 (330)
251 2v9v_A Selenocysteine-specific 44.5 9.8 0.00041 16.6 2.1 43 19-61 19-61 (135)
252 1zx4_A P1 PARB, plasmid partit 43.1 14 0.00061 15.6 5.0 41 8-50 15-55 (192)
253 3lap_A Arginine repressor; arg 42.9 11 0.00047 16.2 2.2 15 27-41 49-63 (170)
254 3hn0_A Nitrate transport prote 41.6 9.8 0.00041 16.6 1.7 189 93-294 5-207 (283)
255 2obp_A Putative DNA-binding pr 41.5 8.8 0.00037 16.8 1.5 51 19-69 38-90 (96)
256 3bwg_A Uncharacterized HTH-typ 41.3 15 0.00065 15.4 2.8 41 19-61 31-71 (239)
257 3jvd_A Transcriptional regulat 41.2 4.6 0.00019 18.5 0.0 22 19-40 8-29 (333)
258 3g41_A Amino acid ABC transpor 40.9 16 0.00066 15.4 9.8 170 92-276 9-202 (246)
259 2l49_A C protein; P2 bacteriop 40.7 16 0.00066 15.4 4.3 37 1-38 1-38 (99)
260 3op9_A PLI0006 protein; struct 40.5 16 0.00067 15.4 2.7 33 6-39 12-44 (114)
261 3eet_A Putative GNTR-family tr 40.4 16 0.00067 15.3 3.6 41 19-61 55-95 (272)
262 1utx_A CYLR2; DNA-binding prot 40.2 16 0.00067 15.3 2.7 42 4-49 5-57 (66)
263 3mky_B Protein SOPB; partition 39.5 16 0.00069 15.3 5.4 44 5-50 27-73 (189)
264 3m8j_A FOCB protein; all-alpha 39.2 17 0.0007 15.2 3.7 26 19-44 62-87 (111)
265 2r1j_L Repressor protein C2; p 37.4 18 0.00075 15.1 4.0 38 1-39 1-40 (68)
266 3cfx_A UPF0100 protein MA_0280 37.4 8.5 0.00036 16.9 0.9 34 94-128 6-39 (296)
267 3cij_A UPF0100 protein AF_0094 37.3 8.1 0.00034 17.0 0.8 35 93-128 5-39 (295)
268 2rc8_A Glutamate [NMDA] recept 37.0 18 0.00076 15.0 4.0 170 107-284 71-267 (294)
269 1jye_A Lactose operon represso 36.9 5.9 0.00025 17.9 0.0 23 18-40 4-26 (349)
270 2elh_A CG11849-PA, LD40883P; s 36.8 18 0.00077 15.0 5.6 37 8-44 29-65 (87)
271 1stz_A Heat-inducible transcri 36.8 18 0.00077 15.0 5.0 64 2-68 14-88 (338)
272 3bs3_A Putative DNA-binding pr 36.5 18 0.00077 15.0 2.7 23 16-38 22-44 (76)
273 1pc3_A Phosphate-binding prote 36.3 4.8 0.0002 18.4 -0.5 77 92-170 26-111 (350)
274 1r71_A Transcriptional repress 36.0 19 0.00079 14.9 3.2 24 16-39 51-74 (178)
275 3del_B Arginine binding protei 34.3 20 0.00084 14.8 9.0 182 93-293 11-216 (242)
276 3f52_A CLP gene regulator (CLG 33.8 20 0.00086 14.7 2.7 20 19-38 43-62 (117)
277 1i7d_A DNA topoisomerase III; 33.3 5.8 0.00024 17.9 -0.5 15 30-44 198-212 (659)
278 1zs4_A Regulatory protein CII; 33.1 21 0.00088 14.6 2.4 24 13-37 21-44 (83)
279 2qc0_A Uncharacterized protein 32.6 21 0.0009 14.6 3.3 11 17-27 42-52 (373)
280 3k69_A Putative transcription 32.5 21 0.0009 14.6 6.6 64 2-66 6-77 (162)
281 1mw9_X DNA topoisomerase I; de 32.2 8.4 0.00035 16.9 0.2 20 22-41 292-311 (592)
282 3hug_A RNA polymerase sigma fa 31.7 22 0.00093 14.5 4.4 32 14-45 50-81 (92)
283 3dbw_A Transcriptional regulat 31.2 23 0.00095 14.5 3.3 41 19-62 45-86 (226)
284 3c7j_A Transcriptional regulat 31.1 23 0.00095 14.4 2.7 41 19-62 51-92 (237)
285 1adr_A P22 C2 repressor; trans 30.9 23 0.00096 14.4 4.3 38 1-39 1-40 (76)
286 3cfz_A UPF0100 protein MJ1186; 30.3 12 0.00052 16.0 0.8 27 267-293 254-280 (292)
287 2wv0_A YVOA, HTH-type transcri 30.3 23 0.00098 14.4 3.6 41 19-61 36-76 (243)
288 2d5v_A Hepatocyte nuclear fact 29.7 24 0.001 14.3 4.0 38 3-40 4-45 (164)
289 1tw3_A COMT, carminomycin 4-O- 29.6 24 0.001 14.3 5.6 60 7-69 41-102 (360)
290 3k6v_A Solute-binding protein 29.3 13 0.00056 15.8 0.8 36 92-128 42-77 (354)
291 3f6w_A XRE-family like protein 28.3 25 0.0011 14.2 2.7 24 15-38 25-48 (83)
292 3ic7_A Putative transcriptiona 28.2 7.4 0.00031 17.3 -0.7 42 19-62 37-78 (126)
293 3fmy_A HTH-type transcriptiona 28.1 26 0.0011 14.1 2.1 18 19-36 26-43 (73)
294 2kpj_A SOS-response transcript 27.4 26 0.0011 14.1 2.7 20 19-38 24-43 (94)
295 1zug_A Phage 434 CRO protein; 27.4 26 0.0011 14.1 2.7 22 17-38 16-37 (71)
296 1eu8_A Trehalose/maltose bindi 26.8 14 0.00058 15.7 0.5 25 269-293 294-318 (409)
297 3mlf_A Transcriptional regulat 26.6 27 0.0011 14.0 2.7 20 18-37 37-56 (111)
298 3c9h_A ABC transporter, substr 26.0 14 0.0006 15.6 0.5 33 94-128 35-67 (355)
299 2gai_A DNA topoisomerase I; zi 25.8 15 0.00061 15.6 0.5 22 22-43 253-274 (633)
300 2ewt_A BLDD, putative DNA-bind 25.2 29 0.0012 13.8 2.7 21 18-38 22-44 (71)
301 3eus_A DNA-binding protein; st 25.0 29 0.0012 13.8 2.7 19 19-37 29-47 (86)
302 1xma_A Predicted transcription 24.9 19 0.00081 14.9 1.0 12 265-276 103-114 (145)
303 2b5a_A C.BCLI; helix-turn-heli 24.7 30 0.0012 13.8 2.7 22 18-39 24-45 (77)
304 2v7f_A RPS19, RPS19E SSU ribos 24.4 23 0.00098 14.4 1.3 22 275-296 117-138 (150)
305 2bx9_A Anti-trap, AT, tryptoph 24.3 8.8 0.00037 16.8 -0.9 20 54-73 31-50 (53)
306 3elk_A Putative transcriptiona 24.3 30 0.0013 13.7 2.0 51 28-78 44-100 (117)
307 3lcz_A YCZA, inhibitor of trap 24.1 8.9 0.00037 16.8 -0.9 20 54-73 31-50 (53)
308 3f8b_A Transcriptional regulat 24.1 22 0.00095 14.5 1.2 56 27-82 43-104 (116)
309 3ihu_A Transcriptional regulat 23.8 31 0.0013 13.7 2.8 42 19-63 41-83 (222)
310 2ofy_A Putative XRE-family tra 23.7 31 0.0013 13.7 3.9 22 16-37 26-47 (86)
311 3frw_A Putative Trp repressor 23.6 31 0.0013 13.6 5.6 38 6-43 47-84 (107)
312 2p5t_A Putative transcriptiona 23.3 14 0.00059 15.7 0.0 22 18-39 15-36 (158)
313 3jyv_T S19E protein; eukaryoti 23.0 9.4 0.0004 16.7 -0.9 22 275-296 117-138 (141)
314 1b0n_A Protein (SINR protein); 22.5 33 0.0014 13.5 2.7 24 16-39 13-36 (111)
315 1r69_A Repressor protein CI; g 22.2 33 0.0014 13.5 2.7 22 17-38 14-35 (69)
316 2z8f_A Galacto-N-biose/lacto-N 22.1 25 0.0011 14.2 1.1 25 270-294 291-315 (412)
317 3k01_A Acarbose/maltose bindin 21.9 21 0.00089 14.6 0.7 40 89-128 24-64 (412)
318 2fjr_A Repressor protein CI; g 21.7 34 0.0014 13.4 5.5 34 6-39 9-42 (189)
319 2rn7_A IS629 ORFA; helix, all 21.5 34 0.0014 13.4 2.7 28 17-44 30-57 (108)
320 1lst_A Lysine, arginine, ornit 21.3 35 0.0015 13.4 6.6 127 108-247 30-163 (239)
No 1
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=100.00 E-value=0 Score=362.80 Aligned_cols=291 Identities=24% Similarity=0.375 Sum_probs=256.5
Q ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHH
Q ss_conf 98888999999999982768999988289978999999999999588217976994685001343322222222221012
Q gi|254780282|r 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETT 80 (299)
Q Consensus 1 m~md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~ 80 (299)
|++|++||++|++|+++|||++||++|++||||||++|++||++||++||+|+++|+.||++|+.++++++.++..++.+
T Consensus 1 m~~~~~qL~~F~~v~e~gs~s~AA~~L~vsQpavS~~I~~LE~~lg~~LF~R~~~~~~lT~~G~~l~~~a~~il~~~~~~ 80 (306)
T 3hhg_A 1 MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLTEEGAQYFRRAQRILQEMAAA 80 (306)
T ss_dssp -CCCHHHHHHHHHHHHSSSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEETTSSSCEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 99988999999999981999999999887989999999999999699999986995688863643337899999988765
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21001223222222333211100000000013566754200012222222222222222222234565432111122345
Q gi|254780282|r 81 QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL 160 (299)
Q Consensus 81 ~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l 160 (299)
............+.++++++++++..++++.+..+.+.+|++.+++..++...+|..|++|++|.... ..++++...+|
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~L~~~~~Dl~i~~~~-~~~~~l~~~~l 159 (306)
T 3hhg_A 81 ETEMLAVHEIPQGVLSVDSAMPMVLHLLAPLAAKFNERYPHIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHL 159 (306)
T ss_dssp HHHHHTTSSCCCEEEEEEBCHHHHHHTHHHHHHHHHHHCTTEEEEEECCSSSHHHHTTSSSCEEESCC-CCCSSCEEEEE
T ss_pred HHHHHCCCCCCCCCCEEECCHHHHHHHCCHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCEEEEECCC-CCCCCEEEEEE
T ss_conf 55531133112575035302158988716132788986898459997374788987499039998178-88898489996
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCC
Q ss_conf 55433211234432111222222110001123566433211000235665202234321211453242001356787384
Q gi|254780282|r 161 VTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 (299)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~G 240 (299)
++++++++|+++|+...+.+++++++.++++|.+............+ ....+......+++++..++.++|.+|.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~g~g 235 (306)
T 3hhg_A 160 FDSRFRVIASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNTWAVLD----AQGNPYKISPHFTASSGEILRSLCLSGCG 235 (306)
T ss_dssp EEEEEEEEECHHHHHHHCCCSSTTGGGGSCBCEESSTTTSCEEEEEC----SSSCEEECCCSSEESSHHHHHHHHHTTSC
T ss_pred EEEEEEEEEECHHHHHCCCCCCHHHHCCCCEEEECCCCCHHHHHHHH----HHCCCCCCCCCEECCCHHHHHHHHHCCCC
T ss_conf 30359999806477645998997896148479856998603678876----30576554543102689999999981992
Q ss_pred EEEEEHHHHCC---CCCEEEECCC-CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 23311777601---9984661776-66766008999348778888999999999999850
Q gi|254780282|r 241 IALLPDYIVKD---NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 241 ia~lp~~~~~~---~~~lv~i~~~-~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
++++|.+++.+ +++++.++++ .+.+.+++|++|++++..++++++|+|||.++.++
T Consensus 236 i~~lp~~~~~~~l~~~~lv~i~~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~e~l~~ 295 (306)
T 3hhg_A 236 IVCLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLVEELGN 295 (306)
T ss_dssp EEEEEHHHHHHHHHHTSSEECSTTTBCCCEEEEEEEECSGGGGCHHHHHHHHHHHHHCC-
T ss_pred EEECCHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 899239999999977986995674567871389999979987899999999999998571
No 2
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=100.00 E-value=0 Score=356.48 Aligned_cols=287 Identities=22% Similarity=0.263 Sum_probs=249.0
Q ss_pred CCHHHHHHHHHHHHHC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCE-EEEECCCCCCCCCCCCCCCCCHH
Q ss_conf 8889999999999827-689999882899789999999999995882179769946-85001343322222222221012
Q gi|254780282|r 3 FDWDKLRVFYVVARSG-SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL-TLTEQGSKLHRVTSEVYHKLETT 80 (299)
Q Consensus 3 md~~~L~~f~~v~~~g-s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~-~lT~~G~~l~~~a~~~l~~~~~~ 80 (299)
||+++|+||++|+++| |||+||++|++||||||++|++||++||++||+|++||+ .||++|+.|+++++.+++.++++
T Consensus 1 M~l~~L~~F~~v~~~~~S~s~AA~~L~isQ~avS~~I~~LE~~lg~~Lf~R~~r~~~~lT~~G~~l~~~a~~il~~~~~~ 80 (324)
T 1al3_A 1 MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARSGKHLTQVTPAGQEIIRIAREVLSKVDAI 80 (324)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 94799999999998599899999998888889999999999996997499879988667886985201132233222333
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 210012232222223332111000000000135667542000122222222---22222222222234565432111122
Q gi|254780282|r 81 QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQ 157 (299)
Q Consensus 81 ~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~~~~~~~l~~ 157 (299)
.+.+........|.++||++++++..++++.+.+|.++||+++|++...+. ...+..|++|+++.......+.++..
T Consensus 81 ~~~~~~~~~~~~g~l~i~~~~~~~~~~l~~~l~~~~~~~P~i~i~l~~~~~~~~~~~l~~~~~D~~i~~~~~~~~~~~~~ 160 (324)
T 1al3_A 81 KSVAGEHTWPDKGSLYVATTHTQARYALPGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLVM 160 (324)
T ss_dssp -------CCCCEEEEEEEECHHHHHHTSHHHHHHHHHHCTEEEEEEEECCHHHHHHHHHTTCCSEEEESSCCCTTSCEEE
T ss_pred CCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEEEEECCCCCCCCCEEE
T ss_conf 33222323456675067533687887899999999975898289999798799986674798258863067677665058
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHH
Q ss_conf 34555433211234432111222222110001123566433211000235665202234321211453242001356787
Q gi|254780282|r 158 RKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 (299)
Q Consensus 158 ~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~ 237 (299)
.+++.++++++++++|+...+.+++++||.++|||.+....+.......++... +......+++++.++++++|.+
T Consensus 161 ~~l~~~~~~~~~~~~~~l~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~ 236 (324)
T 1al3_A 161 LPCYHWNRSIVVTPEHPLATKGSVSIEELAQYPLVTYTFGFTGRSELDTAFNRA----GLTPRIVFTATDADVIKTYVRL 236 (324)
T ss_dssp EEEEEECEEEEECTTSTTTTTSCCCHHHHHTSEEEEECTTSTTHHHHHHHHHHH----TCCCEEEEEESSHHHHHHHHHH
T ss_pred EEEEEEEEEEEECCCCHHCCCCCCCHHHHHHCCCEECCCCCCHHHHHHHHHHHC----CCCCCEEEEECCHHHHHHHHHH
T ss_conf 986530057997465221039999999996287720489984899999999976----9987569999999999999993
Q ss_pred HCCEEEEEHHHHCC--CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 38423311777601--998466177666766008999348778888999999999999
Q gi|254780282|r 238 GSGIALLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 238 g~Gia~lp~~~~~~--~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
|.|++++|.+.+.+ +++++.+......+.+++|++||+++..++.++.|++++.++
T Consensus 237 g~gi~~lp~~~~~~~~~~~lv~~~~~~~~~~~~~~l~~r~~~~~s~~~~~fi~~~~~~ 294 (324)
T 1al3_A 237 GLGVGVIASMAVDPVSDPDLVKLDANGIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPH 294 (324)
T ss_dssp TSCEEEEEGGGCCTTTCTTSEEEECBTTBCCEEEEEEEETTCCCCHHHHHHHHHHCTT
T ss_pred CCEEEECHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9979972598973874899899958788865579999969685699999999999987
No 3
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=100.00 E-value=0 Score=349.84 Aligned_cols=290 Identities=16% Similarity=0.159 Sum_probs=246.7
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~ 82 (299)
|||++|++|++|+++|||++||++|++||||||++|++||+++|++||+|+++|+.||++|+.|+++++++++.++++..
T Consensus 1 Md~~~l~~f~~v~~~~s~~~AA~~L~~sq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~ 80 (294)
T 1ixc_A 1 MEFRQLKYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGD 80 (294)
T ss_dssp CCHHHHHHHHHHHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCBC-----CCBCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96799999999998199999999988888999999999999869989998899627868899998620156776556776
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--C-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 001223222222333211100000000013566754200012222222--2-2222222222223456543211112234
Q gi|254780282|r 83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN--K-DIDISMDYADCAIRLRKPIQSSSLIQRK 159 (299)
Q Consensus 83 ~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~--~-~~~l~~~~~Di~i~~~~~~~~~~l~~~~ 159 (299)
.++.......|++++++.+++...++++.+.+|.++||++.+++...+ . ...+..|++|++|.... ...+++...+
T Consensus 81 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~p~v~~~i~~~~~~~~~~~l~~g~~Di~i~~~~-~~~~~l~~~~ 159 (294)
T 1ixc_A 81 RSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFF-PRHPGIEIVN 159 (294)
T ss_dssp HHHHHHHTCCEEEEEEECSGGGGTHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEESCC-CCCTTEEEEE
T ss_pred HHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHCCCCCCCCCEEEEEECCC-CCCCCCCCCC
T ss_conf 665302366523787325307999999999997531876444304520310032114796468885167-7787542220
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHC
Q ss_conf 55543321123443211122222211000112356643321100023566520223432121145324200135678738
Q gi|254780282|r 160 LVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 (299)
Q Consensus 160 l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~ 239 (299)
|+.++++++++++|+...+..++++|+.+++|+.+........ ...+.......+..+...+++++..+++++|..|.
T Consensus 160 l~~~~~~~~~~~~h~~~~~~~i~~~dl~~~~~i~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~g~ 237 (294)
T 1ixc_A 160 IAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSF--ADEVIGLFKHAGIEPRIARVVEDATAALALTMAGA 237 (294)
T ss_dssp EEEEEEEEEEEGGGGGGTCSEECGGGGTTCEEEECCCSSSSCH--HHHHHHHHHHTTCCCEEEEECSSHHHHHHHHHTTS
T ss_pred CCCCEEEEEEECCCHHHCCCCCCHHHHHCCCEEEECCCCCCCH--HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCC
T ss_conf 1352079998273076539999999981899799638767514--67777765324547744688657999999999499
Q ss_pred CEEEEEHHHHCC-CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 423311777601-998466177666766008999348778888999999999999850
Q gi|254780282|r 240 GIALLPDYIVKD-NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 240 Gia~lp~~~~~~-~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
|++++|.+++.. .+++..+....+...+++|++|++++ .+|.+++|++++.+.+||
T Consensus 238 gia~lp~~~~~~~~~~~~~~~l~~~~~~~~~~li~~~~~-~~p~~~~fi~~l~~~~~~ 294 (294)
T 1ixc_A 238 ASSIVPASVAAIRWPDIAFARIVGTRVKVPISCIFRKEK-QPPILARFVEHVRRSAKD 294 (294)
T ss_dssp CBEEEEHHHHTSCCTTEEEEEECCTTCEEEEEEEEESSS-CCHHHHHHHHHHHHHHCC
T ss_pred EEEECCHHHHHHHCCCEEEEECCCCCCEEEEEEEEECCC-CCHHHHHHHHHHHHHCCC
T ss_conf 799810889855229859997789886038999997999-998999999999997179
No 4
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- plasmid, transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A
Probab=100.00 E-value=0 Score=346.51 Aligned_cols=289 Identities=18% Similarity=0.168 Sum_probs=246.2
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~ 82 (299)
||+++|++|++|+++|||++||++||+||||||++|++||++||++||+|+++|+.||++|+.|+++++.+++.++++..
T Consensus 2 m~~~~L~~f~~v~~~~s~~~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~il~~~~~~~~ 81 (305)
T 3fxq_A 2 LKLQTLQALICIEEVGSLRAAAQLLHLSQPALSAAIQQLEDELKAPLLVRTKRGVSLTSFGQAFMKHARLIVTESRRAQE 81 (305)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHTTCCHHHHHHHHHHHHHHHTSCSEEECSSSEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98899999999998399999999988888999999999999869989998599147997375221232134466999997
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf 001223222222333211100000000013566754200012222222---22222222222223456543-21111223
Q gi|254780282|r 83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIRLRKPI-QSSSLIQR 158 (299)
Q Consensus 83 ~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~~~~~~-~~~~l~~~ 158 (299)
.+...+.+..|+|+||++++++..++++.+.+|.++||++.+++...+ ....+..|++|++|....+. .++++...
T Consensus 82 ~~~~~~~~~~~~l~I~~~~~~~~~~l~~~i~~~~~~~p~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~l~~~ 161 (305)
T 3fxq_A 82 EIGQLRGRWEGHITFAASPAIALAALPLALASFAREFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDIDTDLEAQ 161 (305)
T ss_dssp HHHHHHHHHHTEEEEEECHHHHHTHHHHHHHHHHHHCTTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGGGSCTTEEEE
T ss_pred HHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEEECCCCCCCCCCEEE
T ss_conf 55320347662599962463027678999999999789976765744817777787559734899840554356884378
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHH
Q ss_conf 45554332112344321112222221100011235664332110002356652022343212114532420013567873
Q gi|254780282|r 159 KLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 (299)
Q Consensus 159 ~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g 238 (299)
++++++++++++++|+...+ .+++|+..++|+..............++...+ ..+....+++++..+++++|..|
T Consensus 162 ~l~~~~~~~~~~~~hpl~~~--~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~v~~g 236 (305)
T 3fxq_A 162 PLYVSDVVIVGQRQHPMANA--TRLAELQECRWAFSSAPRGPGAIIRNAFARYG---LPEPKLGLVCESFLALPGVVAHS 236 (305)
T ss_dssp EEEECCEEEEEETTCTTTTC--CSGGGGTTSEEEEECCTTSTTHHHHHHHHHTT---CCCCEEEEEECCTTTHHHHHHTS
T ss_pred ECCCCCEEEEECCCCCCCCC--CCHHHHHCCEEEEECCCCCCCHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 71444179998688845689--89567530214552377653125778999719---86322333336799999999749
Q ss_pred CCEEEEEHHHHCCC---CCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 84233117776019---98466177666766008999348778888999999999999850
Q gi|254780282|r 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 239 ~Gia~lp~~~~~~~---~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
.|++++|.+++... ++++.+....+...+.+|++|+++...+|+++.|++++.+.+++
T Consensus 237 ~gi~~lp~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~fi~~i~~~~~~ 297 (305)
T 3fxq_A 237 DLLTTMPRTLYERNAFKDQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHALQ 297 (305)
T ss_dssp SCEEEEEHHHHHSSTTGGGEEECCCSSCCCCCEEEEEEETTSCCCHHHHHHHHHHHHHCC-
T ss_pred CEEEECCHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9899811999985513799899968888877689999989698899999999999999995
No 5
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=100.00 E-value=0 Score=352.37 Aligned_cols=290 Identities=23% Similarity=0.381 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 99999999998276899998828997899999999999958821797699468500134332222222222101221001
Q gi|254780282|r 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85 (299)
Q Consensus 6 ~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~~~~ 85 (299)
..|++|++|+++|||++||++||+||||||++|++||++||++||+|+++|+.||++|+.|+++++.++...+++.....
T Consensus 1 ~~L~~f~av~~~gS~s~AA~~L~~sq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~~~~~~~~~~~~~ 80 (300)
T 3mz1_A 1 QGMRAFLRVVETGNFTRASASLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYYERAARLLSDLDELDGSLS 80 (300)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCEECHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 91189999998199999999988698999999999999859978998799714898798667888763132322222222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22322222233321110000000001356675420001222222222222222222223456543211112234555433
Q gi|254780282|r 86 ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM 165 (299)
Q Consensus 86 ~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~~~~ 165 (299)
.......|.++||++++++..++++.+.+|.++||+++|++..++...++..+++|++|....+ .++++...+++++++
T Consensus 81 ~~~~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~p~i~i~i~~~~~~~~l~~~~~Di~i~~~~~-~~~~l~~~~l~~~~~ 159 (300)
T 3mz1_A 81 TAQSLPKGRLRVETASAFANLVIIPALPEFHKKYPDIQIDLGVSDRTIDYLAENVDCAIRAGTL-TDQSLIARRITEMKF 159 (300)
T ss_dssp ----CCCEEEEEEECHHHHHHTHHHHHHHHHHHCTTEEEEEEECCCC--CCCTTCCEEEEESSC-SCTTSEEEEEEEECE
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHCCCCEEEEEECCC-CCCCCEEEEECCCCE
T ss_conf 3345776415511347899999999999999988984999997863678876992499990788-875533544045526
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCEEEEE
Q ss_conf 21123443211122222211000112356643321100023566520223432121145324200135678738423311
Q gi|254780282|r 166 HAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 (299)
Q Consensus 166 ~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gia~lp 245 (299)
+++++++|+..++.....+.+...+.+.......................+......+++++..+++.++..|.|++++|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~lp 239 (300)
T 3mz1_A 160 VACASRDFLERHPVPQHPSDLEKNCYVVGYFLPKTGQQMPFHFRRGNEEIEVSGRYTMAANESTTYLAAARAGLGVIQAP 239 (300)
T ss_dssp EEEEEHHHHHHSCCCSSGGGGGTTSCEEEEBCCC--CBCCEEEEETTEEEEECCCEEEEESSHHHHHHHHHTTCCBEEEE
T ss_pred EEEECHHHHHHCCCCCCHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHCCCCEEEECC
T ss_conf 99965799974478776678641001101024556522567766543202556531476241378899851798599876
Q ss_pred HHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 777601---998466177666766008999348778888999999999999850
Q gi|254780282|r 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 246 ~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
.+++++ +++++.++++.....+++|++|++++..+|++++|+|||.+.+.+
T Consensus 240 ~~~~~~~~~~g~lv~~~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~e~~~~ 293 (300)
T 3mz1_A 240 LFMVREDLRNGTMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFADWVVKVMAQ 293 (300)
T ss_dssp HHHHHHHHHHTSEEECCTTCBCCCEEEEEEECTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999999987898799688777886369999969987899999999999999853
No 6
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, protein structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=100.00 E-value=0 Score=343.31 Aligned_cols=290 Identities=18% Similarity=0.211 Sum_probs=242.3
Q ss_pred CC-CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-CCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 98-888999999999982768999988289978999999999999588217976-9946850013433222222222210
Q gi|254780282|r 1 MS-FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-ARGLTLTEQGSKLHRVTSEVYHKLE 78 (299)
Q Consensus 1 m~-md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~-~~~~~lT~~G~~l~~~a~~~l~~~~ 78 (299)
|. |||++|++|++++++|||++||+.|++||||||++|++||++||++||+|+ ++|+.||++|+.|+++++.+++.++
T Consensus 1 m~~~~l~~L~~f~~~~~~~s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~il~~~~ 80 (306)
T 3fzv_A 1 MASYTLRQLKYFVTTVECGSVAEASRKLYIAQPSISTAVKGLEESFGVQLFIRHHAQGVSLTPAGARFYRKAQELLRMAH 80 (306)
T ss_dssp ---CCHHHHHHHHHHHHSSSHHHHHHHHTCCC-CHHHHHHHHHHHC-CCCC---------CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99899999999999998299999999988888999999999999839978997899864669889864435678988889
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1221001223222222333211100000000013566754200012222222---2222222222222345654321111
Q gi|254780282|r 79 TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIRLRKPIQSSSL 155 (299)
Q Consensus 79 ~~~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~~~~~~~~~~l 155 (299)
++.+.+........|+++||++++++..++++.+.+|.+.||+++|++...+ ...+|..+++|++|.... ...+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~P~i~l~~~~~~~~~~~~~L~~~~~Di~i~~~~-~~~~~~ 159 (306)
T 3fzv_A 81 EFEQNALADNDVIAGQIDIGCFETVAPLYLPGLIAGFRQAYPGVEIRIRDGEQQELVQGLTSGRFDLAFLYEH-DLDSTI 159 (306)
T ss_dssp HHHHC-CCCCCCCCEEEEEEEEGGGHHHHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHHTSCSEEEECSS-SCCTTE
T ss_pred HHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCCEEEEECC-CCCCCC
T ss_conf 9999998523577752688850478999989999999853897499999787799999998599736888357-899872
Q ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHH
Q ss_conf 223455-5433211234432111222222110001123566433211000235665202234321211453242001356
Q gi|254780282|r 156 IQRKLV-TIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 (299)
Q Consensus 156 ~~~~l~-~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 234 (299)
...+++ .+.++++++++|+......++++||.++|++.+..... ......++ ...+......+++++..++.++
T Consensus 160 ~~~~l~~~~~~~v~~~~~~~l~~~~~~~~~dl~~~~~i~~~~~~~-~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~ 234 (306)
T 3fzv_A 160 ETEPLMPPQRPHALLPEGHRFAGQAQVSLRDLCLEPMILLDVQPS-RTYFVSLF----EELGLTPNIAFSSPSIEMVRGM 234 (306)
T ss_dssp EEEESSCCBCCEEEEETTCTTTTSSEECHHHHTTSCEEEECCTTH-HHHHHHHH----HHTTCCCCEEEEESCHHHHHHH
T ss_pred EEEEECCCCEEEEEECCCHHHHCCCCCCHHHHHCCCEEEECCCCC-CCHHHHHH----HHCCCCCCCCCCCCCHHHHHHH
T ss_conf 589921462689996264265337889999981799898459876-51045567----6538775425467888999999
Q ss_pred HHHHCCEEEEEHHHHCC---CC-CEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 78738423311777601---99-8466177666766008999348778888999999999999850
Q gi|254780282|r 235 CVLGSGIALLPDYIVKD---NP-NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 235 v~~g~Gia~lp~~~~~~---~~-~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
|..|.|++++|...+.+ ++ .++.+....+...+++|++|++++..+|++++|+||+.+++++
T Consensus 235 v~~g~gi~~lp~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~fi~~lk~~l~~ 300 (306)
T 3fzv_A 235 VGQGFGFSLLVTRPHSECTYDGKKVVMVDLAEPVSTSGLAAAWLKRAQLTKPARLFVDYCREQLGK 300 (306)
T ss_dssp HHTTSCBEEECCCCSCSBCTTSCBEEEEEESSCCCBCCCEEEEETTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHCCCEEEEEEHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 980994999425878898756997799867788764279999989898999999999999999778
No 7
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A*
Probab=100.00 E-value=0 Score=337.04 Aligned_cols=290 Identities=18% Similarity=0.171 Sum_probs=238.5
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~ 82 (299)
||+++|++|++++++|||++||++|++||||||++|++||++||++||+|+++|+.||++|+.|++++++++..++++.+
T Consensus 1 M~l~~L~~f~~v~~~~s~~~AA~~L~isqsavS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~i~~~~~~~~~ 80 (313)
T 2h98_A 1 MELRHLRYFVTVVEEQSISKAAEKLCIAQPPLSRQIQKLEEELGIQLFERGFRPAKVTEAGMFFYQHAVQILTHTAQASS 80 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 95799999999998299999999988888999999999999959988998899785098699998754554578998878
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0012232222223332111000000000135667542000122222222---2222222222223456543211112234
Q gi|254780282|r 83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRK 159 (299)
Q Consensus 83 ~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~~~~~~~l~~~~ 159 (299)
.++.. ....|.++||++++++..++++.+..|.+.||+++|++...+. ...+..|++|++|.... ...+++....
T Consensus 81 ~~~~~-~~~~~~l~i~~~~~~~~~~l~~~l~~~~~~~P~v~i~i~~~~~~~~~~~l~~~~~Di~i~~~~-~~~~~~~~~~ 158 (313)
T 2h98_A 81 MAKRI-ATVSQTLRIGYVSSLLYGLLPEIIYLFRQQNPEIHIELIECGTKDQINALKQGKIDLGFGRLK-ITDPAIRRIM 158 (313)
T ss_dssp ---------CCEEEEEECGGGGGTTHHHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHTSCSEEEESSC-CCCTTEEEEE
T ss_pred HHHHH-CCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCCEEEECC-CCCCHHHHHH
T ss_conf 88752-256623999861056788999999999862993343211278278999974215551353035-6673134554
Q ss_pred CCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHH
Q ss_conf 55543321123443211--1222222110001123566433211000235665202234321211453242001356787
Q gi|254780282|r 160 LVTIHMHAYAAPHYLKN--CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 (299)
Q Consensus 160 l~~~~~~~v~~~~~~~~--~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~ 237 (299)
++.++++++++++|+.. .+.+++++|+.+++++.+....... ...++.......+......+++++..+++++|.+
T Consensus 159 l~~~~~~~~~~~~~~l~~~~~~~i~~~~l~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (313)
T 2h98_A 159 LHKEQLKLAIHKHHHLNQFAATGVHLSQIIDEPMLLYPVSQKPN--FATFIQSLFTELGLVPSKLTEIREIQLALGLVAA 236 (313)
T ss_dssp EEEEEEEEEEETTSGGGGGTTSCBCGGGGTTSCEEECCCSSSSS--HHHHHHHHHHHTTCCCSCEEECSCHHHHHHHHHT
T ss_pred HHHHHHEEECCCCCHHHHCCCCCCCHHHHHCCCEEEEECCCCCC--CHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHH
T ss_conf 33322034204776244335787588998089879841456764--1025667788638987400134989999999994
Q ss_pred HCCEEEEEHHHHCCC-CCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 384233117776019-984661776667660089993487788889999999999998506
Q gi|254780282|r 238 GSGIALLPDYIVKDN-PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 (299)
Q Consensus 238 g~Gia~lp~~~~~~~-~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~~ 297 (299)
|.|++++|.+++... .+++.+....+.+.++++++|+++. .++.+++|++++.+...+.
T Consensus 237 g~gi~~lP~~~~~~~~~~l~~~pl~~~~~~~~i~l~~r~~~-~~~~~~~f~~~~~e~~a~~ 296 (313)
T 2h98_A 237 GEGVCIVPASAMDIGVKNLLYIPILDDDAYSPISLAVRNMD-HSNYIPKILACVQEVFATH 296 (313)
T ss_dssp TSCBEEEEGGGGGSCCTTEEEEEBCSTTCEEEEEEEEETTC-CCTHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEHHHHHHHHCCCEEEEECCCCCCCEEEEEEEECCC-CCHHHHHHHHHHHHHHHCC
T ss_conf 99699713889844309989998789986007999998998-8979999999999997505
No 8
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcriptional regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=100.00 E-value=0 Score=333.80 Aligned_cols=289 Identities=17% Similarity=0.164 Sum_probs=237.6
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~ 82 (299)
||+++|++|++|+++||||+||+.|||||||||++|++||++||++||+|+++|+.||++|+.|+++++.++..++++.+
T Consensus 1 M~l~~l~~f~~v~~~~s~s~AA~~L~vtq~avS~~i~~LE~~lG~~Lf~R~~~~~~lT~~G~~l~~~a~~il~~~~~~~~ 80 (312)
T 2h9b_A 1 MELRHLRYFVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPEGHFFYQYAIKLLSNVDQMVS 80 (312)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEECHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 96799999999998099999999988888999999999999839988998899727887565203035667899999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--C-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 001223222222333211100000000013566754200012222222--2-2222222222223456543211112234
Q gi|254780282|r 83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN--K-DIDISMDYADCAIRLRKPIQSSSLIQRK 159 (299)
Q Consensus 83 ~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~--~-~~~l~~~~~Di~i~~~~~~~~~~l~~~~ 159 (299)
...... +..+.++||++++++..++++.+.+|.++||++++++...+ . ...+.+|++|++|.... ..++++...+
T Consensus 81 ~~~~~~-~~~~~l~i~~~~~~~~~~l~~~l~~~~~~~p~v~l~~~~~~~~~l~~~l~~g~~Dlai~~~~-~~~~~~~~~~ 158 (312)
T 2h9b_A 81 MTKRIA-SVEKTIRIGFVGSLLFGLLPRIIHLYRQAHPNLRIELYEMGTKAQTEALKEGRIDAGFGRLK-ISDPAIKHSL 158 (312)
T ss_dssp ---------CCEEEEEECGGGGGTTHHHHHHHHHHTCTTCEEEEEECCHHHHHHHHHTTSCSEEEESSC-CCCTTEEEEE
T ss_pred HHHHHH-CCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECC-CCCCCCEEEE
T ss_conf 998654-35745999753566899999999999997899778531355077999997699647996068-8987617998
Q ss_pred CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHH
Q ss_conf 555433211234432111--222222110001123566433211000235665202234321211453242001356787
Q gi|254780282|r 160 LVTIHMHAYAAPHYLKNC--REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 (299)
Q Consensus 160 l~~~~~~~v~~~~~~~~~--~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~ 237 (299)
++.++++++++++|+... +.+.+++|+.++|+|.+....... ....+.......+......++++|..+++++|.+
T Consensus 159 l~~~~~~~~~~~~~~l~~~~~~~~~~~dl~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~ 236 (312)
T 2h9b_A 159 LRNERLMVAVHASHPLNQMKDKGVHLNDLIDEKILLYPSSPKPN--FSTHVMNIFSDHGLEPTKINEVREVQLALGLVAA 236 (312)
T ss_dssp EEEEEEEEEEETTSGGGGGTTTCBCGGGSTTSEEEECCCSSSSS--HHHHHHHHHHTTTCCCSEEEECSSHHHHHHHHHT
T ss_pred ECCCEEEEEECCCCHHHHCCCCCCHHHHHCCCCEEEECCCCCCC--HHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHC
T ss_conf 11305999963788466533432025564379779842876651--2466666666507886146531679999999983
Q ss_pred HCCEEEEEHHHHCCC-CCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 384233117776019-98466177666766008999348778888999999999999850
Q gi|254780282|r 238 GSGIALLPDYIVKDN-PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 238 g~Gia~lp~~~~~~~-~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
|.|++++|.++++.+ ++++.+....+.+.++++++|+++. .++.++.|++++.+...+
T Consensus 237 g~gi~ilP~~~~~~~~~~l~~~pl~~~~~~~~~~l~~r~~~-~~~~~~~~~~~~~~~~a~ 295 (312)
T 2h9b_A 237 GEGISLVPASTQSIQLFNLSYVPLLDPDAITPIYIAVRNME-ESTYIYSLYETIRQIYAY 295 (312)
T ss_dssp TSCBEEEEGGGGGBCCTTEEEEEBCSTTCEEEEEEEEETTC-CCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECHHHHHHHHCCEEEEECCCCCCEEEEEEEEECCC-CCHHHHHHHHHHHHHHHC
T ss_conf 99599920988745338879998579886328999997999-998999999999999717
No 9
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein structure initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=100.00 E-value=0 Score=324.56 Aligned_cols=288 Identities=13% Similarity=0.096 Sum_probs=236.0
Q ss_pred CC-CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCH
Q ss_conf 98-88899999999998276899998828997899999999999958821797699468500134332222222222101
Q gi|254780282|r 1 MS-FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET 79 (299)
Q Consensus 1 m~-md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~ 79 (299)
|+ ||+++|++|++|+|+||||+||++|++||||||++|++||+++|++||+|+++|++||++|+.|+++++.++...++
T Consensus 7 ~~~~dl~~L~~f~~v~e~gS~s~AA~~L~isq~avS~~i~~LE~~lG~~Lf~R~~~~~~lT~~G~~l~~~~~~~l~~~~~ 86 (310)
T 2esn_A 7 LRRLDLNLLLVFDALYRHRNVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHLAAAVAAALRALGE 86 (310)
T ss_dssp TTTSCTTHHHHHHHHHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEEEETTEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 00699999999999998099999999978798999999999999959948998899874666899999999999986666
Q ss_pred HHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCC--CC
Q ss_conf 2210012232-22222333211100000000013566754200012222222---222222222222234565432--11
Q gi|254780282|r 80 TQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIRLRKPIQ--SS 153 (299)
Q Consensus 80 ~~~~~~~~~~-~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~~~~~~~--~~ 153 (299)
.....+.... ...+.++||+.++++..++++++..|.+.+|++.+.+...+ ....+..|++|++|....+.. ++
T Consensus 87 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~l~~g~~D~ai~~~~~~~~~~~ 166 (310)
T 2esn_A 87 GLEEWRPFVPGQSQRTFVFAATDYTAFALLPPLMNRLQHSAPGVRLRLVNAERKLSVEALASGRIDFALGYDEEHERLPE 166 (310)
T ss_dssp HTGGGSCCCTTTCCCEEEEECCHHHHHHHHHHHHHHHHHHSTTCEEEEECCSSSCCHHHHHHTSSSEEEECCSTTCCCCT
T ss_pred HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHCCCCCCEEEEECCCCCCCCC
T ss_conf 79999753201447624787531377889999999974228863211211550333222105774058982476555777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHH
Q ss_conf 11223455543321123443211122222211000112356643321100023566520223432121145324200135
Q gi|254780282|r 154 SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 (299)
Q Consensus 154 ~l~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 233 (299)
++...+|+++++++||+++|+...+. ++.+++.+++++..............++.. .+..+...++++|+.++++
T Consensus 167 ~l~~~~l~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~i~~~~~s~~~~l~ 241 (310)
T 2esn_A 167 GIQAHDWFADRYVVVARRDHPRLAGA-PTLEGYLAERHAVVTPWNEDSGVIDRLLAR----SGLRREVAVQLPTVLAALF 241 (310)
T ss_dssp TEEEEEEEEECEEEEEESSCTTCSSS-CCHHHHHTSEEEEECTTCCSSCHHHHHHHH----TTCCCEEEEEESCHHHHHH
T ss_pred CCEEEEEEEEEEEEECCCCCHHHCCC-CCHHHHHCCCCEEEECCCCCCHHHHHHHHH----CCCCCCCEEEECCHHHHHH
T ss_conf 74268824544787327788423599-997898139818983798862377789997----4999872599698999999
Q ss_pred HHHHHCCEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 678738423311777601---9984661776667660089993487788889999999999998506
Q gi|254780282|r 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 (299)
Q Consensus 234 ~v~~g~Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~~ 297 (299)
+|..|.|++++|.++++. .++++.+.++...+.+++|++||+++..+|+.+ ||.+++|+-
T Consensus 242 ~v~~g~~i~~lP~~~~~~~~~~~~l~~~~~p~~~~~~~i~l~~h~~~~~~p~~~----~l~~~ik~~ 304 (310)
T 2esn_A 242 LAGSTDFLLTAPRHAARALAEAAGLALYPAPFDIPPYVLRLYSHVQHVGRDAHA----WMIGQLKGL 304 (310)
T ss_dssp HHHTSSCEEEEEHHHHHHHHHHHTEEEECCSSCCCCEEEEEEEECC--CCHHHH----HHHHHSCCC
T ss_pred HHHHCCEEEHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEECCCCCCCHHHH----HHHHHHHHH
T ss_conf 999399788368999998855599799828989986689999898877998999----999999998
No 10
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=100.00 E-value=0 Score=327.45 Aligned_cols=288 Identities=17% Similarity=0.147 Sum_probs=239.8
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~ 82 (299)
||+++|++|++|+++|||++||++|++||||||++|++||++||++||+|+++|++||++|+.++++++.++...++...
T Consensus 14 ~dl~~L~~F~~v~e~gs~t~AA~~L~isq~avS~~I~~LE~~lg~~LF~R~~~~~~lT~~g~~l~~~~~~~~~~~~~~~~ 93 (315)
T 1uth_A 14 IDLNLLVVFNQLLLDRSVSTAGEKLGLTQPAVSNSLKRLRTALNDDLFLRTSKGMEPTPYALHLAEPVIYALNTLQTALT 93 (315)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998099999999988798999999999999959958999899744238999989999999986402267
Q ss_pred HCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0012232-222223332111000000000135667542000122222222---222222222222345654321111223
Q gi|254780282|r 83 ELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQR 158 (299)
Q Consensus 83 ~~~~~~~-~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~~~~~~~l~~~ 158 (299)
....... ...|.+++++++++...++++.+..|.+.||++++++...+. ...+..|++|++|.... ..++++...
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~p~~~i~i~~~~~~~~~~~l~~g~~D~~i~~~~-~~~~~l~~~ 172 (315)
T 1uth_A 94 TRNSFDPFASTRTFNLAMTDIGEMYFMPPLMEALAQRAPHIQISTLRPNAGNLKEDMESGAVDLALGLLP-ELQTGFFQR 172 (315)
T ss_dssp CCSSCCTTTCCCEEEEECCHHHHHHHHHHHHHHHHHHCTTCEEEEECTTSSCHHHHHHHTSCCEEEECCT-TCCTTEEEE
T ss_pred HHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHCCCCEEEEEECC-CCCCCCEEE
T ss_conf 7775420455423898400577898899999998874887632899704488999986799529998079-999982899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHH
Q ss_conf 45554332112344321112222221100011235664332110002356652022343212114532420013567873
Q gi|254780282|r 159 KLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 (299)
Q Consensus 159 ~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g 238 (299)
+|++++++++++++|+...+. ...+++.+++++.+............++ ...+......++++++.+++++|.+|
T Consensus 173 ~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~g 247 (315)
T 1uth_A 173 RLFRHRYVCMFRKDHPSAKSP-MSLKQFSELEHVGVVALNTGHGEVDGLL----ERAGIKRRMRLVVPHFIAIGPILHST 247 (315)
T ss_dssp EEEEECEEEEEETTCSSCCSS-CCHHHHHHSEEEEECCTTSGGGGHHHHH----HHTTCCCEEEEEESSSTTHHHHHHTS
T ss_pred EEEEEEEEEEECCCCHHHCCC-CCHHHHHHCCEEEEECCCCCHHHHHHHH----HHCCCCCCEEEECCCHHHHHHHHHCC
T ss_conf 976110699962875543289-8836774187179855986158999999----97699873379528578899999809
Q ss_pred CCEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 8423311777601---998466177666766008999348778888999999999999850
Q gi|254780282|r 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 239 ~Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
.|++++|.+++.. .++++.+..+.+.+.+++|++|+++...+|+.++|.+.+.+-++|
T Consensus 248 ~gi~~lP~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~lr~~i~~~~~e 308 (315)
T 1uth_A 248 DLIATVPQRFAVRCEVPFGLTTSPHPAKLPDIAINLFWHAKYNRDPGNMWLRQLFVELFSE 308 (315)
T ss_dssp SCBEEEEHHHHHHHTTTTTEEEEECSSCCCCEEEEEEEEGGGTTCHHHHHHHHHHHHHHCC
T ss_pred CEEEECCHHHHHHHHHCCCEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999801999997744699799778988896689999868988998999999999999985
No 11
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=322.34 Aligned_cols=285 Identities=15% Similarity=0.129 Sum_probs=234.5
Q ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHH
Q ss_conf 98888999999999982768999988289978999999999999588217976994685001343322222222221012
Q gi|254780282|r 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETT 80 (299)
Q Consensus 1 m~md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~ 80 (299)
|.||+++|++|++|+++|||++||++|||||||||++|++||++||++||+|+ |++.||++|+.|+++++.++...+++
T Consensus 4 ~~~d~~~L~~f~av~~~gS~s~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~-r~~~lT~~G~~ll~~~~~il~~~~~~ 82 (303)
T 3isp_A 4 PQLDGPQLAALAAVVELGSFDAAAERLHVTPSAVSQRIKSLEQQVGQVLVVRE-KPCRATTAGIPLLRLAAQTALLESEA 82 (303)
T ss_dssp -CCCSHHHHHHHHHHHHTCHHHHHTTTTCCHHHHHHHHHHHHHHHTSCCEECS-SSCEECGGGHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEECC-CCCEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 98899999999999981999999999787989999999999998398029979-99575315021136688999999875
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21001223222222333211100000000013566754200012222222222222222222234565432111122345
Q gi|254780282|r 81 QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL 160 (299)
Q Consensus 81 ~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l 160 (299)
...++.......|.++|+++++++..++++.+.+|.+.+|++++.... .....+.+|.+|++|... +.+.+++...++
T Consensus 83 ~~~~~~~~~~~~~~l~i~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~-~~~~~l~~g~~d~~i~~~-~~~~~~~~~~~l 160 (303)
T 3isp_A 83 LAEMGGNASLKRTRITIAVNADSMATWFSAVFDGLGDVLLDVRIEDQD-HSARLLREGVAMGAVTTE-RNPVPGCRVHPL 160 (303)
T ss_dssp TTTTC--CTTCCEEEEEEECHHHHHTTGGGGGTTCCSEEEEEEECCHH-HHHHHHHTTSCSEEEESC-CSCCTTEEEEEE
T ss_pred HHCCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCCCCHHHHCCCCC-CHHHHHHCCEEEEEECCC-CCCCCCCEEEEE
T ss_conf 310112244553058997412134455455531354100111112100-056663047477764157-889877526881
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHC
Q ss_conf 55433211234432111-22222211000112356643321100023566520223432121145324200135678738
Q gi|254780282|r 161 VTIHMHAYAAPHYLKNC-REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 (299)
Q Consensus 161 ~~~~~~~v~~~~~~~~~-~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~ 239 (299)
++++++++++++|+... ..+.+..++.+++++.+........ .+.......... ...+++++..+++++|.+|.
T Consensus 161 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~s~~~~~~~v~~G~ 235 (303)
T 3isp_A 161 GEMRYLPVASRPFVQRHLSDGFTAAAAAKAPSLAWNRDDGLQD---MLVRKAFRRAIT--RPTHFVPTTEGFTAAARAGL 235 (303)
T ss_dssp EEEEEEEEECHHHHHHHCTTCSCTTTTTTSCBCCSSTTCCHHH---HHHHHHHSSCCC--CCBCCCCSHHHHHHHHHTTS
T ss_pred CCCEEEEEECCHHHHHCCCCCCCCCHHHCCCCCCCCCCCCHHH---HHHHHHHCCCCC--CCEEEECHHHHHHHHHHHCC
T ss_conf 1330899988279874368887720100274323477750778---999986213677--86066250899999999399
Q ss_pred CEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 423311777601---9984661776667660089993487788889999999999998506
Q gi|254780282|r 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 (299)
Q Consensus 240 Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~~ 297 (299)
|||++|.+++++ +|.+|.+.+. ..++.++|++.+..+|.+++|++++.+.++++
T Consensus 236 Gia~lP~~~~~~~l~~g~Lv~l~~~----~~~~~L~w~~~~~~~~~~~~~~~~~~~~a~~~ 292 (303)
T 3isp_A 236 GWGMFPEKLAASPLADGSFVRVCDI----HLDVPLYWQCWKLDSPIIARITDTVRAAASGL 292 (303)
T ss_dssp CBEEEEHHHHHHHHHHSSCEESSSC----CEEEEEEEEEESSCCHHHHHHHHHHHHHTTTS
T ss_pred EEEECCHHHHHHHHHCCCEEECCCC----CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 7998749999999977985873698----86346787606768989999999999999998
No 12
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR structural genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli K12} PDB: 3hfu_A
Probab=100.00 E-value=1.1e-33 Score=213.37 Aligned_cols=228 Identities=19% Similarity=0.164 Sum_probs=190.3
Q ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CC-CCCCCCCCC
Q ss_conf 332222222222101221001223222222333211100000000013566754200012222222--22-222222222
Q gi|254780282|r 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN--KD-IDISMDYAD 141 (299)
Q Consensus 65 ~l~~~a~~~l~~~~~~~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~--~~-~~l~~~~~D 141 (299)
.|+++|++++.+++++...+++..+..+|+|+||++++++..++++.+.+|.++||++++++...+ .. ..+..|++|
T Consensus 2 if~~~a~~il~~~~~~~~~i~~~~~~~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~i~~~~~~~l~~~l~~g~~D 81 (238)
T 2hxr_A 2 VWRQYASRALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPSITLQLQEMSQEKIEDMLCRDELD 81 (238)
T ss_dssp -----------------------------CEEEEECHHHHTTTHHHHHHHHHHHCTTSCEEEEECCHHHHHHHHHTTSCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCH
T ss_conf 84999999999999999999974389842899995378999999999999999889988997328879999999869830
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 22345654321111223455543321123443211122222211000112356643321100023566520223432121
Q gi|254780282|r 142 CAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS 221 (299)
Q Consensus 142 i~i~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (299)
++|.... ...+++...++++++++++++++|+...+.+++++||.++|||.+....... .++.......+.....
T Consensus 82 ~~i~~~~-~~~~~~~~~~l~~~~~~~~~~~~hpla~~~~i~~~dL~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~ 156 (238)
T 2hxr_A 82 VGIAFAP-VHSPELEAIPLLTESLALVVAQHHPLAVHEQVALSRLHDEKLVLLSAEFATR----EQIDHYCEKAGLHPQV 156 (238)
T ss_dssp EEEEESS-CCCTTEEEEEEEEEEEEEEEETTSGGGGCSEECGGGGGGCEEEEECTTSHHH----HHHHHHHHHTTCCCEE
T ss_pred HHHHCCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHCCCEEEECCCCCHH----HHHHHHHHHCCCCCCE
T ss_conf 0120255-4431043333455422321320046654035879998139689848998579----9999999976998752
Q ss_pred EEEECCCCHHHHHHHHHCCEEEEEHHHHCCCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 1453242001356787384233117776019984661776667660089993487788889999999999998506
Q gi|254780282|r 222 CLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 (299)
Q Consensus 222 ~~~~~s~~~~~~~v~~g~Gia~lp~~~~~~~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~~ 297 (299)
.+++++..+++++|.+|.|++++|.+++.+.++.+.+....+.+.++++++|++++..++++++|+|++.++++.+
T Consensus 157 ~~~~~~~~~~~~~v~~g~gi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~s~~~~~fi~~~~e~~~~~ 232 (238)
T 2hxr_A 157 VIEANSISAVLELIRRTSLSTLLPAAIATQHDGLKAISLAPPLLERTAVLLRRKNSWQTAAAKAFLHMALDKCAVV 232 (238)
T ss_dssp EEEESCHHHHHHHHHHSSCBEEEETHHHHHCTTEEEEEESSCSCEEEEEEEEETTSCCCHHHHHHHHHHHHHHC--
T ss_pred EECCCCHHHHHHHHHHCCEEEEEHHHHHHHCCCCEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 1236877999999993997997029986037893399788998624999999895978999999999999998776
No 13
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2; 1.64A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.97 E-value=5.5e-32 Score=203.44 Aligned_cols=212 Identities=13% Similarity=0.143 Sum_probs=169.0
Q ss_pred CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21012210012232222223332111000000000135667542000122222222222222222222345654321111
Q gi|254780282|r 76 KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSL 155 (299)
Q Consensus 76 ~~~~~~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~~~~~~~l 155 (299)
.++++...+.+. ...+|.|+|+++++|+..||+|.|.+|+++||+|+|++.+++...++..+++|++|+... ..++++
T Consensus 3 ~i~~a~~~~~~~-~~~~~~L~i~~~~sfa~~wL~P~L~~F~~~~P~I~i~l~~~~~~~~l~~~~~Dl~I~~~~-~~~~~~ 80 (218)
T 2qsx_A 3 AIQHATASLIQT-NTDQELLVVDVTPSFASLWLVPNINDFHQRHPNIRVKILTGDGAVKNIHGESDLHVRCLP-LSTHYE 80 (218)
T ss_dssp -----------------CEEEEEECHHHHHHTHHHHHHHHHHHCTTCEEEEEECCSCC-----CCSEEEEEEE-CCSCCS
T ss_pred HHHHHHHHHHHC-CCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHCCCCEEEHHHCCCC-CCCCCC
T ss_conf 899999999844-899973999818999999999999999998869599998357312111210200100489-899650
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHH
Q ss_conf 22345554332112344321112222221100011235664332110002356652022343212114532420013567
Q gi|254780282|r 156 IQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 (299)
Q Consensus 156 ~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v 235 (299)
....++++.+++||+++++.. .+++++.++++|..... ...+..|+...+...... ...+++|+..+++++|
T Consensus 81 ~~~~l~~~~~~~v~s~~~~~~----~~~~~l~~~~li~~~~~---~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~av 152 (218)
T 2qsx_A 81 YSQLLCEETLLLIGNTNLPKL----SDNQAISHYPFIPQTTR---PQLWEQFKQENDLECPIT-YHSVGFEHFYLACEAV 152 (218)
T ss_dssp SEEEEEEEEEEEEEETTCC-----------CTTSCBCCCTTC---TTHHHHHHTCC-----CC-BCSBCCSSHHHHHHHH
T ss_pred EEEEECCEEEEECCCCCCCCC----CCCHHHHHCEEECCCCC---CHHHHHHHHHCCCCCCCC-CCCEEECCHHHHHHHH
T ss_conf 578721010342024121323----58145432035214677---306888777528664555-4303762688999999
Q ss_pred HHHCCEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 8738423311777601---9984661776667660089993487788889999999999998506
Q gi|254780282|r 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 (299)
Q Consensus 236 ~~g~Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~~ 297 (299)
.+|+|||++|.+++++ +|+|+++++....+.+.+|++|++++..++++++|+|||+++++..
T Consensus 153 ~~G~Gia~lp~~~v~~~l~~g~Lv~~~~~~~~~~~~~~lv~~~~~~~~~~v~~F~d~L~~~~~~~ 217 (218)
T 2qsx_A 153 RMEKGLALLPDFMAQFSILRGDIQHIGNLKLHSGYGYYVVIPNFRLTSRKVALFHDWLKDKLTHH 217 (218)
T ss_dssp HTTCCBEEEEHHHHHHHHHTTSEEEEEEEEEEEEEEEEEECCTTCTTCHHHHHHHHHHHHHHC--
T ss_pred HHCCCEEECCHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 97995595463747899878997997874457887599998189879989999999999999855
No 14
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=99.97 E-value=2.7e-31 Score=199.46 Aligned_cols=200 Identities=16% Similarity=0.196 Sum_probs=165.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32222223332111000000000135667542000122222222222222222222345654321111223455543321
Q gi|254780282|r 88 SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA 167 (299)
Q Consensus 88 ~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~~~~~~ 167 (299)
.+..+|+|+||++++++..||+|.|.+|++.||+|+|++.+++...++.++++|++|..+.+ ..+++...+|+++++++
T Consensus 7 ~~~~~g~Lri~~~~sfa~~~L~p~L~~F~~~~P~i~v~l~~~~~~~~l~~~~~Dl~i~~~~~-~~~~~~~~~L~~~~~~~ 85 (219)
T 3kos_A 7 TKQTQEKLKIGVVGTFAIGCLFPLLSDFKRSYPHIDLHISTHNNRVDPAAEGLDYTIRYGGG-AWHDTDAQYLCSALMSP 85 (219)
T ss_dssp ----CEEEEEEEEHHHHHHTHHHHHHHHHHHCTTEEEEEEEECSCCCHHHHTCSEEEEEECS-CCTTEEEEEEEECCEEE
T ss_pred CCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEEECCCC-CCCCCEEEEECCCCCEE
T ss_conf 79997709997819999999999999999988397999996575221102555899733787-88664367730244355
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCEEEEEHH
Q ss_conf 12344321112222221100011235664332110002356652022343212114532420013567873842331177
Q gi|254780282|r 168 YAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 (299)
Q Consensus 168 v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gia~lp~~ 247 (299)
||+|++..+ ..+++||.++++|..... ..+..|+.......+.+....++++++.+++++|.+|.||+++|.+
T Consensus 86 v~sp~~~~~---~~~~~dl~~~~li~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~av~~G~Giallp~~ 158 (219)
T 3kos_A 86 LCSPTLASQ---IQTPADILKFPLLRSYRR----DEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQAGMGVAIAPVR 158 (219)
T ss_dssp EBCHHHHTT---CSSGGGGGGSCEEEESCT----THHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHTTSCBEEEEGG
T ss_pred ECCCCCCCC---CCCHHHHHHCHHEECCCC----CHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHCCEEEECCHH
T ss_conf 238320246---899999972321002676----4157777631666555665238972189999999959989988799
Q ss_pred HHC---CCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 760---1998466177666766008999348778888999999999999850
Q gi|254780282|r 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 248 ~~~---~~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
++. +.|.++.++... .+...+|++|++++..++++++|+|||.+++++
T Consensus 159 ~v~~~l~~g~Lv~~~~~~-~~~~~~~l~~~~~~~~~~~~~~F~~~L~~~l~~ 209 (219)
T 3kos_A 159 MFTHLLSSERIVQPFLTQ-IDLGSYWITRLQSRPETPAMREFSRWLTGVLHK 209 (219)
T ss_dssp GCHHHHHTTSSBCCCCCC-BCSCEEEEEEETTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEECCCC-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999998789879746767-765619999969987898999999999999877
No 15
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=99.96 E-value=5e-31 Score=197.89 Aligned_cols=203 Identities=20% Similarity=0.284 Sum_probs=168.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22222233321110000000001356675420001222222222222222222223456543211112234555433211
Q gi|254780282|r 89 VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY 168 (299)
Q Consensus 89 ~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~~~~~~v 168 (299)
+.++|+||||++++++.++|++.|.+|+++||+|+|++.+++...++.++++|++|..... .++++....+++++++++
T Consensus 3 ~~~~G~lrI~~~~~~~~~~L~p~l~~F~~~~P~v~i~i~~~~~~~~l~~~~~d~~i~~~~~-~~~~~~~~~l~~~~~~~~ 81 (213)
T 3hhf_B 3 EIPQGVLSVDSAMPMVLHLLAPLAAKFNERYPHIRLSLVSSEGYINLIERKVDIALRAGEL-DDSGLRARHLFDSRFRVI 81 (213)
T ss_dssp --CCEEEEEEECHHHHHHTHHHHHHHHHHHCTTEEEEEECCSTTHHHHTTSSSEEEECC---CCSSEEEEEEEEECEEEE
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHEEEEHHCCCCC-CCCCCCEEEEEEEEEEEC
T ss_conf 8842799991388999999999999999988497999997563012231201010004776-665431246300568850
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCEEEEEHHH
Q ss_conf 23443211122222211000112356643321100023566520223432121145324200135678738423311777
Q gi|254780282|r 169 AAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gia~lp~~~ 248 (299)
++++|+...+.+.+++|+..++++.+.......... ..............+++++.++++++|.+|+|++++|..+
T Consensus 82 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~Gva~lp~~~ 157 (213)
T 3hhf_B 82 ASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNTWA----VLDAQGNPYKISPHFTASSGEILRSLCLSGCGIVCLSDFL 157 (213)
T ss_dssp ECHHHHHHHCCCSSGGGGGGSCBCEESSCGGGGEEE----EECTTSCEEECCCSSEESSHHHHHHHHHTTSCBEEEEHHH
T ss_pred CCHHHHHHCCCCCCHHHHCCCCEEEECCCCCCCCEE----EHHCCCCEEEECCEEEECCHHHHHHHHHHCCEEEECCHHH
T ss_conf 460468843999881563255279853775531000----0113574132035078877999999998299399955899
Q ss_pred HCC---CCCEEEECCCC-CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 601---99846617766-6766008999348778888999999999999850
Q gi|254780282|r 249 VKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 249 ~~~---~~~lv~i~~~~-~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
+++ .++++++++.. ......+|++|++++..++++++|+|||.+++.+
T Consensus 158 v~~~~~~g~Lv~vl~~~~~~~~~~i~lv~~~~~~~~~~~~~fid~l~~~l~~ 209 (213)
T 3hhf_B 158 VDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLVEELGN 209 (213)
T ss_dssp HHHHHHHTSSEEECTTTBCCCCEEEEEEEEGGGGGCHHHHHHHHHHHHHC--
T ss_pred HHHHCCCCCEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCH
T ss_conf 8755028968995775667872089999979987899999999999998530
No 16
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding domain, cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=99.96 E-value=8.7e-30 Score=190.68 Aligned_cols=208 Identities=20% Similarity=0.192 Sum_probs=169.3
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10012232222223332111000000000135667542000122222222---222222222222345654321111223
Q gi|254780282|r 82 IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQR 158 (299)
Q Consensus 82 ~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~~~~~~~l~~~ 158 (299)
++..+.++..+|+||||++++++..+||+++..|+++||++++++...+. ...|..|++|+||........+++...
T Consensus 3 ~~~~~~~~~~~G~lrIg~~~~~a~~~Lp~~l~~f~~~~P~i~l~i~~~~~~~l~~~L~~g~~D~ai~~~~~~~~~~~~~~ 82 (228)
T 2fyi_A 3 PRGSHMTNDTSGVLTIATTHTQARYSLPEVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLVAF 82 (228)
T ss_dssp ---CCTTTTCCEEEEEEECHHHHHHTHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEESSSSTTCTTEEEE
T ss_pred HHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCCCCEEE
T ss_conf 68887359997179999758899999999999999988994899996765999999866883323331123568653367
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHH
Q ss_conf 45554332112344321112222221100011235664332110002356652022343212114532420013567873
Q gi|254780282|r 159 KLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 (299)
Q Consensus 159 ~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g 238 (299)
+++.++++++++++|+.....+++++||.++|||.+............++.. .+......+++++..+++.+|.+|
T Consensus 83 ~l~~~~~~~v~~~~~~~~~~~~i~~~dL~~~p~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~g 158 (228)
T 2fyi_A 83 PWFRWHHSLLVPHDHPLTQISPLTLESIAKWPLITYRQGITGRSRIDDAFAR----KGLLADIVLSAQDSDVIKTYVALG 158 (228)
T ss_dssp EEEEECEEEEEETTCGGGTSSSCCHHHHTTSCEEEECTTSTTHHHHHHHHHH----TTCCCCEEEEESSHHHHHHHHHHT
T ss_pred EEEECCCCEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHH----CCCCCCEEEEECCHHHHHHHHHCC
T ss_conf 7320343011356420003444447887259721268998178889987650----387775347847899999998659
Q ss_pred CCEEEEEHHHHCC--CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 8423311777601--998466177666766008999348778888999999999999
Q gi|254780282|r 239 SGIALLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 239 ~Gia~lp~~~~~~--~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
.|++++|.+.+.. +++++.+......+...+|++|++++..++.+++|+|++.+.
T Consensus 159 ~gi~~lp~~~~~~~~~~~lv~l~~~~~~~~~~~~l~~~~~~~~~~~~~~Fi~~~~~~ 215 (228)
T 2fyi_A 159 LGIGLVAEQSSGEQEEENLIRLDTRHLFDANTVWLGLKRGQLQRNYVWRFLELCNAG 215 (228)
T ss_dssp SCEEEEEGGGGSTTCCTTEEEECCTTTSCCEEEEEEEETTCCBCHHHHHHHHHHCSS
T ss_pred CEEEECCHHHHHHHHCCCEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999986399985654599899968777764089999989686799999999999864
No 17
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=99.95 E-value=6e-30 Score=191.63 Aligned_cols=130 Identities=17% Similarity=0.131 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-----CCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 8888999999999982768999988289978999999999999588217976-----99468500134332222222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-----ARGLTLTEQGSKLHRVTSEVYHK 76 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~-----~~~~~lT~~G~~l~~~a~~~l~~ 76 (299)
.+|.|+|++|.+|+++|||++||++||+||||||++|++||+.||++||+|+ ++|+.||++|+.+++++++++..
T Consensus 19 ~~d~r~l~~~~av~~~gS~t~AA~~L~iSq~avS~~I~~LE~~lG~~Lf~R~~~~l~~~G~~LT~~G~~ll~~a~~ll~~ 98 (265)
T 1b9m_A 19 FADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLYDLLAQI 98 (265)
T ss_dssp EECHHHHHHHHHHHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEEECCCC-----EEECHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHH
T ss_conf 66979999999999979999999997989999999999998762996599753655797048708899999999999999
Q ss_pred CCHHHHHCCCCCCCCCCCCCC----CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 101221001223222222333----2111000000000135667542000122222222
Q gi|254780282|r 77 LETTQIELQESSVKPSGKLRI----ATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK 131 (299)
Q Consensus 77 ~~~~~~~~~~~~~~~~g~i~I----~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~ 131 (299)
.+++.+.++.......|.+.+ +.........+++.+.+|...+|++.+++...+.
T Consensus 99 ~~~a~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~lp~~v~~~~~~~p~~~v~i~~~~~ 157 (265)
T 1b9m_A 99 QQKAFDVLSDDDALPLNSLLAAISRFSLQTSARNQWFGTITARDHDDVQQHVDVLLADG 157 (265)
T ss_dssp HHHHHHHHHHCCSSCTTCHHHHHHHHTEEESSSEEEEEEECCCSSSSCCSEEEEEETTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEEEECCC
T ss_conf 99999998655323453156654310104667774363343110268844999998799
No 18
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=99.95 E-value=7.9e-29 Score=185.14 Aligned_cols=207 Identities=13% Similarity=0.080 Sum_probs=164.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01223222222333211100000000013566754200012222222--2-22222222222234565432111122345
Q gi|254780282|r 84 LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN--K-DIDISMDYADCAIRLRKPIQSSSLIQRKL 160 (299)
Q Consensus 84 ~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~--~-~~~l~~~~~Di~i~~~~~~~~~~l~~~~l 160 (299)
+++.++..+|+|+||++++++.+++|+++.+|+++||++++++.... . ...|.+|++|++|... +...+++...++
T Consensus 2 ~~e~~~~~~G~l~ig~~~s~~~~~lp~~l~~f~~~~P~v~l~l~~~~~~~~~~~L~~g~iD~~i~~~-~~~~~~l~~~~l 80 (232)
T 3ho7_A 2 IEEEQQSLTGRLNIAVLPTIAPYLLPRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAIIAS-KAETEGLEDDLL 80 (232)
T ss_dssp --------CEEEEEEECTTTHHHHHHHHHHHHHHHSTTEEEEEEECCHHHHHHHHHHTSCSEEEESS-CCCCTTEEEEEE
T ss_pred HHHHCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEEEC-CCCCCCCEEEEE
T ss_conf 1252789627999994377899999999999999888968999989828999999779842898634-765543003420
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCC
Q ss_conf 55433211234432111222222110001123566433211000235665202234321211453242001356787384
Q gi|254780282|r 161 VTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 (299)
Q Consensus 161 ~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~G 240 (299)
++++++++++++|+.....+++.+++.+++++.+............++.. ....+....++++++.+++++|.+|.|
T Consensus 81 ~~~~~~lv~~~~h~l~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~lv~~g~G 157 (232)
T 3ho7_A 81 YYEEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDEGHCFRDQLVRFCQM---KGLHERQTAYSGGSMEAFMRLVESGQG 157 (232)
T ss_dssp EEEEEEEEECTTSGGGGSSSBCGGGCCGGGBCCCTTTTTTTSTTHHHHTC---TTTTCSSEEEESCCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHH---CCCCCCCCCCCCCCHHHHHHHHHHCCE
T ss_conf 00102221113454332222213331455379825997426799999997---599887650135888999999993998
Q ss_pred EEEEEHHHHCCCC---CEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 2331177760199---84661776667660089993487788889999999999998
Q gi|254780282|r 241 IALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 (299)
Q Consensus 241 ia~lp~~~~~~~~---~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~ 294 (299)
+|++|.+.+++.. .++......+.+.++++++|++++..++.+++|++++.+.+
T Consensus 158 ia~lP~~~~~~~~~~~~l~~~p~~~~~~~~~i~lv~~~~~~~~~~~~~fi~~l~~~i 214 (232)
T 3ho7_A 158 ITFIPQLTVEQLSPSQKELVRPFGMPRPVREVRLAVRQDYSRRKLREQLIGLLRSAV 214 (232)
T ss_dssp EEEEEGGGGGGSCHHHHTTEECBCSSEEEEEEEEEEETTCSCHHHHHHHHHHHHTTS
T ss_pred EEEECHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 998309999855027988999889998655999999893988999999999999971
No 19
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=99.95 E-value=3.1e-28 Score=181.73 Aligned_cols=202 Identities=17% Similarity=0.165 Sum_probs=164.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22222333211100000000013566754200012222222--22-2222222222234565432111122345554332
Q gi|254780282|r 90 KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN--KD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH 166 (299)
Q Consensus 90 ~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~--~~-~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~~~~~ 166 (299)
..+|+||||++++++.+++|+++.+|+++||+++|++...+ .. ..+..+++|+++... +..++++...+++.++++
T Consensus 2 ~l~G~lrIg~~~~~~~~~lp~~l~~f~~~~P~v~i~i~~~~~~~l~~~l~~~~~d~~~~~~-~~~~~~~~~~~l~~~~~~ 80 (219)
T 1i6a_A 2 TMSGPLHIGLIPTVGPYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDAVILAL-VKESEAFIEVPLFDEPML 80 (219)
T ss_dssp TTCEEEEEEECTTTHHHHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEEEC-CGGGTTSEEEEEEEEEEE
T ss_pred CCEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCHHHHCCC-CCCCCCCCCCCCCCCCEE
T ss_conf 9718999983777999999999999999888968999988848888887536401010235-532345323434455369
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCEEEEEH
Q ss_conf 11234432111222222110001123566433211000235665202234321211453242001356787384233117
Q gi|254780282|r 167 AYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 (299)
Q Consensus 167 ~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gia~lp~ 246 (299)
++++++|+...+..++++|+..+++|.+............++ ...+......+++++..+++++|.+|.|++++|.
T Consensus 81 ~v~~~~hpla~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~lv~~g~gi~~lp~ 156 (219)
T 1i6a_A 81 LAIYEDHPWANREAVPMADLAGEKLLMLEDGHCLRDQAMGFC----FEAGADEDTHFRATSLETLRNMVAAGSGITLLPA 156 (219)
T ss_dssp EEEETTSGGGGCSCEEGGGGTTSEEECCTTTTCSSCTTSSCS----SCTTSEEECTTTTSCHHHHHHHHHTTSCBEEEEG
T ss_pred EEEECCCHHHCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHH----HHCCCCCCEEEEECCHHHHHHHHHHCCEEEEECH
T ss_conf 999259711169998989980476898458753156777899----9738998704774899999999980998999038
Q ss_pred HHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 77601---998466177666766008999348778888999999999999850
Q gi|254780282|r 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 247 ~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
+++.. +++++.+....+.+.++++++|++++..++++++|++++.++++.
T Consensus 157 ~~~~~~~~~~~l~~l~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~lr~~~~~ 209 (219)
T 1i6a_A 157 LAVPPERKRDGVVYLPAIKPEPRRTIGLVYRPGSPLRSRYEQLAEAIRARMDG 209 (219)
T ss_dssp GGSCSSSEETTEEEECEESSCCEEEEEEEECTTCTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99975510798899988899853599999979196789999999999999987
No 20
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=99.94 E-value=9.5e-28 Score=178.88 Aligned_cols=202 Identities=14% Similarity=0.122 Sum_probs=157.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22223332111000000000135667542000122222222---222222222222345654321111223455543321
Q gi|254780282|r 91 PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA 167 (299)
Q Consensus 91 ~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~~~~~~ 167 (299)
.+|+||||++++++.+++|+++.+|+++||+|++++...+. ...+.+|++|++|... +...+++...+++++++++
T Consensus 2 l~G~lrIG~~~s~~~~~lp~~l~~f~~~~P~v~l~i~~~~~~~l~~~l~~g~~D~~i~~~-~~~~~~~~~~~l~~e~~~l 80 (219)
T 3jv9_A 2 LEGAFKLGLIFTVAPYLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAE-PFQEPGIVTEPLYDEPFFV 80 (219)
T ss_dssp -CCCEEEEEETTTHHHHHHHHHHHHHHHSTTCCEEEEEECHHHHHHHHHHTSSSEEEEES-SCCCTTEEEEEEEEEEEEE
T ss_pred CCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEECC-CCCCCCEEEEEECCCCEEE
T ss_conf 802899997778899999999999999888928999988737777656169588875026-8777874898503310899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC-CCCCCCCEEEECCCCHHHHHHHHHCCEEEEEH
Q ss_conf 12344321112222221100011235664332110002356652022-34321211453242001356787384233117
Q gi|254780282|r 168 YAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 (299)
Q Consensus 168 v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~v~~g~Gia~lp~ 246 (299)
+++++|+...+...+++++..++++.+............++...+.. ........+++++..+++++|.+|.|++++|.
T Consensus 81 v~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~G~Gi~~lP~ 160 (219)
T 3jv9_A 81 IVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRHMVASGLAISVLPA 160 (219)
T ss_dssp EEETTCGGGTSSSCCSSTTSSSCEEEECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHHHHHHHTSCEEEEEG
T ss_pred EEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHCCCEEEECCH
T ss_conf 97566421224542113332277444688852678999999975898531345562677879999999985998998718
Q ss_pred HHHCCC--CCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 776019--98466177666766008999348778888999999999999
Q gi|254780282|r 247 YIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 247 ~~~~~~--~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
+.+... +.+..+..+.+.+.++++++|++++..++++++|+++|.+.
T Consensus 161 ~~~~~~~~~~l~~~pl~~~~~~~~i~lv~~k~~~~~~~~~~~~~~l~~~ 209 (219)
T 3jv9_A 161 TALTENDHMLFSIIPFEGTPPSRRVVLAYRRNFVRPKALSAMKAAIMQS 209 (219)
T ss_dssp GGCCTTCTTTEEEECCSSSCCEEEEEEEEETTCSCHHHHHHHHHHHHTS
T ss_pred HHHHHCCCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8971142799899988899854599999989498899999999999973
No 21
>2ql3_A Probable transcriptional regulator, LYSR family protein; APC7314, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Rhodococcus SP}
Probab=99.93 E-value=1.2e-26 Score=172.52 Aligned_cols=198 Identities=16% Similarity=0.163 Sum_probs=150.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22222333211100000000013566754200012222222--2-22222222222234565432111122345554332
Q gi|254780282|r 90 KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN--K-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH 166 (299)
Q Consensus 90 ~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~--~-~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~~~~~ 166 (299)
..+|+||||++++++..++++.+.+|+++||++++++...+ . ...+..|++|++|.... ...+++...+++.++++
T Consensus 2 ~~~G~lrIg~~~~~~~~~l~~~l~~f~~~~P~v~l~i~~~~~~~l~~~l~~g~~Dl~i~~~~-~~~~~~~~~~~~~~~~~ 80 (209)
T 2ql3_A 2 HVAGPIAVGCYPALGPTILPSMLYAFTAEYPRASVEFREDTQNRLRTQLEGGELDVAIVYDL-DLSPEWQTVPLMTREPM 80 (209)
T ss_dssp -CCEEEEEEECGGGTTTTHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHTTSCSEEEEESS-SCCTTEEEEEEEEECCE
T ss_pred CCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEECC-CCCCCHHEECCCCCCCC
T ss_conf 84289999968899999999999999998879389999898289998760798358853046-54200000001211222
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCEEEEE
Q ss_conf 1123443211-122222211000112356643321100023566520223432121145324200135678738423311
Q gi|254780282|r 167 AYAAPHYLKN-CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 (299)
Q Consensus 167 ~v~~~~~~~~-~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gia~lp 245 (299)
++++++|+.. .+.+++++||.++|||.++.... .....+.+ ...+..+...+++++..+++++|.+|.|++++|
T Consensus 81 ~v~~~~~~la~~~~~i~~~~l~~~~~i~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~lv~~g~Gi~~lp 155 (209)
T 2ql3_A 81 VVLGAEHPLAGVDGPVRLADLAEHPMVLLDAPPS-TNHAMDVC----REAGFAPRVAYRTANFETARAFVGRGLGWTLLL 155 (209)
T ss_dssp EEEETTCGGGGCCSCBCGGGGTTSCEEEECCTTH-HHHHHHHH----HHHTCCCCEEEEESCHHHHHHHHHHTSCBEEES
T ss_pred CCCCCCCHHHHCCCCCCHHHHHCCCEEECCCCCH-HHHHHHHH----HHCCCCCEEEEEECCHHHHHHHHHCCCEEEEEE
T ss_conf 2246898345179966799883398563289951-88999999----974999506998263777899998199599902
Q ss_pred HHHHCC---CCCEEEEC--CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 777601---99846617--7666766008999348778888999999999999
Q gi|254780282|r 246 DYIVKD---NPNLVRIM--EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 246 ~~~~~~---~~~lv~i~--~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
...+.. ++..+.+. ....+..+.++++|++++..++++++|+|||.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~pl~~~~~~~~~i~l~~~~~~~~s~~~~~Fi~~l~a~ 208 (209)
T 2ql3_A 156 QRPRVDVTYEGLPVVVKPIAEPKPASVAVVVAWHQEATLSRVARAFIRFVTAG 208 (209)
T ss_dssp CCCSSCBCTTSCBEEEEEBCSSCCCCEEEEEEEETTCCCCHHHHHHHHHHTC-
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 68887786479978999778888744799999919897799999999998646
No 22
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=99.93 E-value=3.6e-26 Score=169.70 Aligned_cols=212 Identities=11% Similarity=0.003 Sum_probs=166.0
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01221001223222222333211100000000013566754200012222222--222-222222222234565432111
Q gi|254780282|r 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN--KDI-DISMDYADCAIRLRKPIQSSS 154 (299)
Q Consensus 78 ~~~~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~--~~~-~l~~~~~Di~i~~~~~~~~~~ 154 (299)
+++.+.....+...+|+++||++++++..++|+++.+|+++||+++|++...+ ... .|..|++|++|... +..+++
T Consensus 4 ~~~~~~~~FdP~~~~~~~rI~~~~~~~~~~lp~ll~~l~~~~P~v~i~l~~~~~~~~~~~L~~g~iDl~I~~~-~~~~~~ 82 (241)
T 3oxn_A 4 RQLLSPVEFDPQQCDQTFTIATTDYAMQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRP-TGPVEP 82 (241)
T ss_dssp ----------CCSCCCEEEEEECSHHHHHTHHHHHHHHHHHCTTCEEEEEECCGGGHHHHHHTSCCSEEEECC-SSCCTT
T ss_pred HHHCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECC-CCCCCC
T ss_conf 8843999989200686899997379999999999999999886928999979879999999759854222026-787410
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHH
Q ss_conf 12234555433211234432111222222110001123566433211000235665202234321211453242001356
Q gi|254780282|r 155 LIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 (299)
Q Consensus 155 l~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 234 (299)
+..++|++++++++++++||...+ +++++|+.+++++.+..... ...+........+. +...++++++.+++.+
T Consensus 83 l~~~~l~~~~~v~v~~~~HPl~~~-~~t~~dl~~~~~v~~~~~~~----~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~l 156 (241)
T 3oxn_A 83 LRSEILGRVGVLCLLSKQHPLANQ-EMSLDDYLSHPHAMIAISDG----VKALIEQALIDKPQ-RKMVLRAYHLEAALAI 156 (241)
T ss_dssp EEEEEEECCCEEEEEETTSGGGGS-CCCHHHHHTSEEEECSCCHH----HHHHHHHHSTTSCC-CEEEEECSSTHHHHHH
T ss_pred CCCCCCCCCCCEEECCCCCHHHHC-CCCHHHHHHCCEEEEECCCC----CCHHHHHHHHHCCC-CCCEEEECCHHHHHHH
T ss_conf 113543223640223766503202-58899995298699957998----62399999996799-9855996789999999
Q ss_pred HHHHCCEEEEEHHHHC---CCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 7873842331177760---1998466177666766008999348778888999999999999850
Q gi|254780282|r 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 235 v~~g~Gia~lp~~~~~---~~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
|..|.|++++|.+++. +.+.++.+..+.+.++++++++|+++...+|+.++|.+.+.+.+++
T Consensus 157 v~~~~~i~ilP~~~~~~~~~~~~L~~~plp~~~p~~~~~l~Wh~~~~~~pa~~wlR~~i~e~~~~ 221 (241)
T 3oxn_A 157 VDTLPIIITVPADLAYLVAERYDLVVKPLPFQFTPFDYSMIWHARCEHSPAQEWLRSVVREECSR 221 (241)
T ss_dssp C--CCCEEEEEHHHHHHHHHHTTEEEECCSSCCCCCCEEEEEEGGGTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCEEEEHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 97599799879999998865399699848999897689999799988998999999999999999
No 23
>3fd3_A Chromosome replication initiation inhibitor protein; structural genomics, LYSR, PSI-2, protein structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=5.4e-27 Score=174.51 Aligned_cols=198 Identities=15% Similarity=0.128 Sum_probs=154.5
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 222333211100000000013566754200012222222--222-22222222223456543211112234555433211
Q gi|254780282|r 92 SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN--KDI-DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY 168 (299)
Q Consensus 92 ~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~--~~~-~l~~~~~Di~i~~~~~~~~~~l~~~~l~~~~~~~v 168 (299)
++++||+++......|++|.|.+|.+.|| +++++..++ ... .+.+|++|++|... +..++++..++|+++++++|
T Consensus 1 r~tlria~~~~sl~~wl~P~L~~f~~~~p-i~l~l~~~~~~~~~~~l~~g~~D~aI~~~-~~~~~~l~~~~L~~~~~~~v 78 (208)
T 3fd3_A 1 RVTLNIATNADSLGTWFLDAVSKFTGGSD-YLVNIAVDDQDHTVEWLRGGRVLAAVTAH-DKPVQGCRVTPLGVLRYHAT 78 (208)
T ss_dssp CCEEEEEECHHHHTTTHHHHHHHHHHTSS-CEEEEEECCSSCHHHHHHTTSCSEEEESC-CSCCTTCEEEEEEEEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHCC-CEEEEEEECCHHHHHHHHCCCEEEEEECC-CCCCCCEEEEEEEEEEEEEE
T ss_conf 95789987738789889999999999797-97999994566278887579759999838-99999869999460279999
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCEEEEEHH
Q ss_conf 234432111-2222221100011235664332110002356652022343212114532420013567873842331177
Q gi|254780282|r 169 AAPHYLKNC-REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 (299)
Q Consensus 169 ~~~~~~~~~-~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gia~lp~~ 247 (299)
|+|+|+.+. +.+.+++||.++|+|.+....... ..+........... ....+++..+++++|.+|+||+++|.+
T Consensus 79 asp~~~~~~~~~~~~~~dL~~~p~i~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~G~Gia~lP~~ 153 (208)
T 3fd3_A 79 ASPDFMARHFADGVTPAALARAPGLTFNQKDRLQ---ASWIRTALGEDVSY--PTHWLPSTDGFVKASLAGMGWGLNPVQ 153 (208)
T ss_dssp ECHHHHHHHCTTCSCHHHHTTSCEEESSTTCCHH---HHHHHHHHSSCCCC--CEEECCCHHHHHHHHHTTSCBEEEEHH
T ss_pred ECHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCH---HHHHHHCCCCCCCC--CEEEECCHHHHHHHHHHCCCEEECCHH
T ss_conf 8349998637999999999508633225666411---35566414766544--337888899999999939947748599
Q ss_pred HHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 7601---998466177666766008999348778888999999999999850669
Q gi|254780282|r 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 (299)
Q Consensus 248 ~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~~~~ 299 (299)
++++ +|+|+++.++. ..++.++|++.+..++++++|.++|.+.+|+|-+
T Consensus 154 ~v~~~l~~g~Lv~l~p~~---~~~v~ly~~~~r~~s~~~~~~~~~l~~~ar~~l~ 205 (208)
T 3fd3_A 154 LVAEHLAAGRLVELMPGT---PLDIPLYWQVNRLAAERLAGLTANMVGTARVVLM 205 (208)
T ss_dssp HHHHHHHHTSSEESSTTC---CEEEEEEEEECTTTTTTTHHHHHHHHHHHHHHSB
T ss_pred HHHHHHHCCCEEEECCCC---CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 999998789868979998---6615479764776898999999999999877546
No 24
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural genomics, DNA-binding protein, PSI-2; 2.30A {Agrobacterium tumefaciens str}
Probab=99.79 E-value=6.3e-20 Score=133.56 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-----CCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 8889999999999827689999882899789999999999995882179769-----94685001343322222222221
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-----RGLTLTEQGSKLHRVTSEVYHKL 77 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-----~~~~lT~~G~~l~~~a~~~l~~~ 77 (299)
|+..++++|.+|+++|||++||+.|++|||+||++|++||++||++||+|+. +|+.||++|+.++++++.+...+
T Consensus 24 ~~~~~~~ll~aV~~~GSit~AA~~L~iSq~avs~~i~~LE~~lg~~Lf~R~~~~~~~~G~~LT~~G~~ll~~~~~i~~~~ 103 (135)
T 2ijl_A 24 LGHGKVELMQLIAETGSISAAGRAMDMSYRRAWLLVDALNHMFRQPVICSQRGGKQGGGAALTVFGAELLERYRGMEERM 103 (135)
T ss_dssp ESHHHHHHHHHHHHHSCHHHHHHHTTCCHHHHHHHHHHHHHHBSSCSEEECCC------EEECHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHH
T ss_conf 49789999999999699999999978898899999999999829857997347877883330899999999999999999
Q ss_pred CHHHH
Q ss_conf 01221
Q gi|254780282|r 78 ETTQI 82 (299)
Q Consensus 78 ~~~~~ 82 (299)
+++.+
T Consensus 104 ~~~~~ 108 (135)
T 2ijl_A 104 NEALR 108 (135)
T ss_dssp HHHTH
T ss_pred HHHHH
T ss_conf 99999
No 25
>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} SCOP: c.94.1.1
Probab=98.59 E-value=7.5e-08 Score=63.58 Aligned_cols=198 Identities=11% Similarity=0.075 Sum_probs=108.3
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCC
Q ss_conf 222333211100000000013566754200012222222---222222222222234565432----1111223455543
Q gi|254780282|r 92 SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIRLRKPIQ----SSSLIQRKLVTIH 164 (299)
Q Consensus 92 ~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~~~~~~~----~~~l~~~~l~~~~ 164 (299)
.++|+|+.+.++. .++-.+...|.++||++++++.... ....+.+|.+|+++.- .+.. ...+...+++.+.
T Consensus 27 ~~~i~i~gs~s~~-~l~~~l~~~f~~~~P~~~v~~~~~gSg~~~~~l~~g~~di~~~s-~~~~~~e~~~~~~~~~ia~~~ 104 (290)
T 1twy_A 27 ASEITISGSTSVA-RIMDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMTS-RYLTESEAQNTLHTFTLAFDG 104 (290)
T ss_dssp -CEEEEEECHHHH-HHHHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHTTSCSEEEES-SCCCTTTCCTTCEEEEEEEEE
T ss_pred CCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCC-CCCHHHHHHCCCEEEEEEECC
T ss_conf 8869999605499-99999999999888895799971686799999982686412255-400134663450567788602
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC----------------CC--CCCCCCCCCCCCCHHHHHHHHCC-----CCCCCCCC
Q ss_conf 321123443211122222211000----------------11--23566433211000235665202-----23432121
Q gi|254780282|r 165 MHAYAAPHYLKNCREPLSIQELDK----------------HN--LITFGDLIPKCMEDFNWLATVDR-----PIGEPRIS 221 (299)
Q Consensus 165 ~~~v~~~~~~~~~~~~~~~~dL~~----------------~~--~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 221 (299)
++++++++.+... ++.++|.+ .+ .+....... ....+........ ........
T Consensus 105 ~~ivv~~~n~~~~---ls~~~L~~i~~g~it~W~~~~~~~~~i~~~~r~~~Sg-t~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (290)
T 1twy_A 105 LAIVVNQANPVTN---LTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSG-TRYSFESLMGLTKTVKDREVSDVAPT 180 (290)
T ss_dssp EEEEECTTCCCCE---ECHHHHHHHHHTSCCBGGGGTSCSCBCEEEEECTTCH-HHHHHHHHHTCEEEETTEEEECSCTT
T ss_pred EEEEECCCCCCCC---CCHHHHHHHHCCCCCCHHHCCCCCCCEEEECCCCCCC-HHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 5764057785234---5898985644287675310489988417852799972-79999999610442121210235771
Q ss_pred EEEECCCCHHHHHHHHHC-CEEEEEHHHHCCCCCEEEEC---C-------CCCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 145324200135678738-42331177760199846617---7-------666766008999348778888999999999
Q gi|254780282|r 222 CLQVNSYLSIMQYCVLGS-GIALLPDYIVKDNPNLVRIM---E-------DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 (299)
Q Consensus 222 ~~~~~s~~~~~~~v~~g~-Gia~lp~~~~~~~~~lv~i~---~-------~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l 290 (299)
....++...+...|..+. +|+++....+.+..+.+.+- | ...+..+++++++.++ ..++.+++|++|+
T Consensus 181 ~~~~~~~~~v~~~v~~~~~aig~~~~~~~~~~vk~l~i~~v~Ps~~~i~~g~YPl~~~~~~i~~~~-~~~~~a~~Fi~fl 259 (290)
T 1twy_A 181 ALVVNSNSMMKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSD-NADEQTKEFIAFL 259 (290)
T ss_dssp SEEESSHHHHHHHHHHCTTEEEEEEGGGCCTTSEECEETTBCCCHHHHHTTCSCCEEEEEEEECTT-TCCHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHCCCCCEEEEEEEECCCCCCEEEECCCCCCHHHHHCCCCCCEEEEEEEEECC-CCCHHHHHHHHHH
T ss_conf 279438489999996488851787752004774265543768997788549987178999999689-9999999999998
Q ss_pred HHH-HHC
Q ss_conf 999-850
Q gi|254780282|r 291 FLK-ARD 296 (299)
Q Consensus 291 ~~~-~r~ 296 (299)
+++ .|+
T Consensus 260 ~S~~gq~ 266 (290)
T 1twy_A 260 KSESAKK 266 (290)
T ss_dssp HSHHHHH
T ss_pred HCHHHHH
T ss_conf 0998899
No 26
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=98.38 E-value=9.1e-08 Score=63.09 Aligned_cols=110 Identities=20% Similarity=0.198 Sum_probs=69.9
Q ss_pred CCCCH--HHHHHHHHHHHHC--------CHHHHHHHHCCCHHHHHHHHHHHHHH-HCCEEEEECCCCEEEEECCCCCCCC
Q ss_conf 98888--9999999999827--------68999988289978999999999999-5882179769946850013433222
Q gi|254780282|r 1 MSFDW--DKLRVFYVVARSG--------SFTHAAEQLHLSQSSISRQISGLETE-VGIKLFYRHARGLTLTEQGSKLHRV 69 (299)
Q Consensus 1 m~md~--~~L~~f~~v~~~g--------s~s~AA~~L~itq~avS~~i~~LE~~-lg~~Lf~R~~~~~~lT~~G~~l~~~ 69 (299)
|+||. ++++++..+.+.+ |.+.-|+.|++|+|++|+.|++||+. |-.+..++.++.+.+|+.|+.+++.
T Consensus 1 msld~t~~~~~aLk~L~~~~~~~~~~~ls~~eLa~~l~is~~tvsr~l~~Le~~GlI~R~~d~R~~~v~LTekG~~~L~~ 80 (230)
T 3cta_A 1 MSLETDDQYYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYT 80 (230)
T ss_dssp ------CHHHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCEEEEEECHHHHHHHHH
T ss_conf 99866699999999999736415799858999999988788899999999998898798115984478988879999999
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHH
Q ss_conf 222222210122100122322222233321110000000--001356675
Q gi|254780282|r 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLL--QGNLKEFLL 117 (299)
Q Consensus 70 a~~~l~~~~~~~~~~~~~~~~~~g~i~I~~~~~~~~~~l--~~~l~~f~~ 117 (299)
.-.. +..+.+... .....|.+.-|... +.+++ +....+|.+
T Consensus 81 ~~~~---~~ri~~~~~--~~~l~G~V~sGlGe--g~~y~s~~~y~~qf~~ 123 (230)
T 3cta_A 81 EFAD---LSRILAIKN--NVVITGTVTSGMGE--GRYYVARKQYIIQFQE 123 (230)
T ss_dssp HHHH---HHHHTTCCC--CEEEEEEECC--------------CCHHHHHH
T ss_pred HHHH---HHHHHHCCC--HHHEEEEEECCCCC--CEEEECCHHHHHHHHH
T ss_conf 9999---999970462--22143248628666--2056526889999888
No 27
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=98.32 E-value=9.2e-07 Score=57.28 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC--CCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 8889999999999827--689999882899789999999999995882179769--946850013433222222222210
Q gi|254780282|r 3 FDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA--RGLTLTEQGSKLHRVTSEVYHKLE 78 (299)
Q Consensus 3 md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~--~~~~lT~~G~~l~~~a~~~l~~~~ 78 (299)
++-.+++.+..+++.+ +++.-|+.++++++++|+.|++||+. |. ..|.+ +.+.||+.|..+++..+.+++..+
T Consensus 150 ls~~~~~iL~~L~~~~~~s~~ela~~l~~s~~tv~r~l~~Le~~-Gl--V~r~~r~~~v~LT~~G~~~~~~~~~~~~~~e 226 (244)
T 2wte_A 150 YSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKF-GI--LTQKGKDRKVELNELGLNVIKLNKSVIESSK 226 (244)
T ss_dssp CCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TS--EEEETTTTEEEECHHHHHHHHHTC-------
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CC--EEEECCCCEEEECHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999997799899999999797988999999999988-99--9983782279987879999999999987569
Q ss_pred HHHHHCCC
Q ss_conf 12210012
Q gi|254780282|r 79 TTQIELQE 86 (299)
Q Consensus 79 ~~~~~~~~ 86 (299)
...+.+.+
T Consensus 227 ~~~e~l~e 234 (244)
T 2wte_A 227 SSEELVKE 234 (244)
T ss_dssp --------
T ss_pred HHHHHHHH
T ss_conf 99998668
No 28
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=97.86 E-value=1.9e-05 Score=49.66 Aligned_cols=75 Identities=19% Similarity=0.324 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHH------CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 888999999999982------76899998828997899999999999958821797699468500134332222222222
Q gi|254780282|r 3 FDWDKLRVFYVVARS------GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHK 76 (299)
Q Consensus 3 md~~~L~~f~~v~~~------gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~ 76 (299)
+.-+.-.|+.++++. -+++.-|+.|+||+|+||+.|++|++. | |+.+..+|+.||+.|+........--..
T Consensus 11 ls~~ee~YL~aI~~l~~~~~~v~~~~iA~~L~vs~~svt~~l~~L~~~-G--lv~~~~~gi~LT~~G~~~A~~i~rrHrl 87 (139)
T 2x4h_A 11 LSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEK-G--LVKKKEDGVWITNNGTRSINYLIKAHRV 87 (139)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT-T--SEEEETTEEEECHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHC-C--CEEEECCCCEECHHHHHHHHHHHHHHHH
T ss_conf 788999999999999975998669999999688907999999999988-9--9545047715788899999999999999
Q ss_pred CCHH
Q ss_conf 1012
Q gi|254780282|r 77 LETT 80 (299)
Q Consensus 77 ~~~~ 80 (299)
++.+
T Consensus 88 ~e~f 91 (139)
T 2x4h_A 88 IEIL 91 (139)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 29
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=97.71 E-value=5.8e-05 Score=46.86 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-------CCEEEEECCCCCCCCCCC
Q ss_conf 88889999999999827--689999882899789999999999995882179769-------946850013433222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-------RGLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-------~~~~lT~~G~~l~~~a~~ 72 (299)
+++..+..++..+++.+ |++.-|+.++++.|+||+.|++||+. | |+.|.. ..+.+|+.|+.+++.+..
T Consensus 45 gLt~~q~~iL~~L~~~~~~s~~ela~~~~~~~stvs~~i~~Le~~-g--li~r~~~~~D~R~~~i~LT~~G~~l~~~~~~ 121 (207)
T 2fxa_A 45 DLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEER-G--YLRFSKRLNDKRNTYVQLTEEGTEVFWSLLE 121 (207)
T ss_dssp TCCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHH-T--SEEEECC------CEEEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-C--CEEEECCCCCCEEEEEEECHHHHHHHHHHHH
T ss_conf 999999999999997699499999999886987999999999968-9--9887238988756898889889999999999
Q ss_pred CCCCCC
Q ss_conf 222210
Q gi|254780282|r 73 VYHKLE 78 (299)
Q Consensus 73 ~l~~~~ 78 (299)
.++...
T Consensus 122 ~~~~~~ 127 (207)
T 2fxa_A 122 EFDPTR 127 (207)
T ss_dssp HCCGGG
T ss_pred HHHHHH
T ss_conf 999999
No 30
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5
Probab=97.69 E-value=0.00013 Score=44.89 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCC
Q ss_conf 899999999998276899998828997899999999999958821797699468500134332
Q gi|254780282|r 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 (299)
Q Consensus 5 ~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~ 67 (299)
-..++.+..+.+..+++.=|+.+++|+|+||+||+.|++. -|+.+.++++.+|+.|+.+.
T Consensus 31 p~R~~IL~~L~~~~~~~eLa~~lg~s~stvs~HL~~L~~a---GLV~~~~~~y~lt~~G~~v~ 90 (96)
T 1y0u_A 31 PVRRKILRMLDKGRSEEEIMQTLSLSKKQLDYHLKVLEAG---FCIERVGERWVVTDAGKIVD 90 (96)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEEETTEEEECTTTCCC-
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEEECCEEEECCCCHHHH
T ss_conf 8999999983579979999999891998999999999988---96798479899865774188
No 31
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=97.62 E-value=5.9e-05 Score=46.83 Aligned_cols=75 Identities=24% Similarity=0.346 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-------CCEEEEECCCCCCCCCCC
Q ss_conf 88889999999999827--689999882899789999999999995882179769-------946850013433222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-------RGLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-------~~~~lT~~G~~l~~~a~~ 72 (299)
+++..+.+++..+.+.+ +.+.-|+.+++++|+||+.|++||+ .-|+.|.+ +.+.+|+.|+.+++.+..
T Consensus 37 glt~~q~~vL~~L~~~~~~t~~~la~~l~i~~~~vsr~l~~L~~---~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 113 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEE---KKYIEVNGHSEDKRTYAINLTEMGQELYEVASD 113 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHH---TTSEEC---------CCBEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHC---CCCEEECCCCCCCCEECCCCCHHHHHHHHHHHH
T ss_conf 98999999999999779979999999989699899999999850---793642479988883004339889999999999
Q ss_pred CCCCCCH
Q ss_conf 2222101
Q gi|254780282|r 73 VYHKLET 79 (299)
Q Consensus 73 ~l~~~~~ 79 (299)
......+
T Consensus 114 ~~~~~~~ 120 (148)
T 3nrv_A 114 FAIEREK 120 (148)
T ss_dssp HTHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 32
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D
Probab=97.58 E-value=4.6e-05 Score=47.44 Aligned_cols=72 Identities=22% Similarity=0.335 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHC---CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCHH
Q ss_conf 9999999999827---689999882899789999999999995882179769-94685001343322222222221012
Q gi|254780282|r 6 DKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-RGLTLTEQGSKLHRVTSEVYHKLETT 80 (299)
Q Consensus 6 ~~L~~f~~v~~~g---s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a~~~l~~~~~~ 80 (299)
+-|++++.+.+.+ +.+.-|+.||+|+|+||+.|++|++. -|+.+.+ +++.||+.|+.....+..--..++.+
T Consensus 8 dYL~~I~~l~~~~~~v~~~dlA~~L~vs~~sv~~~lk~L~~~---GlI~~~~~~~i~LT~~G~~~A~~l~rrhrl~e~f 83 (142)
T 1on2_A 8 MYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKD---EYLIYEKYRGLVLTSKGKKIGKRLVYRHELLEQF 83 (142)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHT---TSEEEETTTEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999853798869999999698878999999999857---9844069986677788999999999999999999
No 33
>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=97.57 E-value=4.7e-05 Score=47.36 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-----CCEEEEECCCCCCCCCCCCC
Q ss_conf 88889999999999827--689999882899789999999999995882179769-----94685001343322222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-----RGLTLTEQGSKLHRVTSEVY 74 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-----~~~~lT~~G~~l~~~a~~~l 74 (299)
+++..+..++..++..+ +.+.=|+.++++.|+||+.|++||+. |.--..+.+ ..+.||+.|+.+++.+....
T Consensus 49 gLt~~q~~iL~~l~~~~~~t~~~La~~~~~~~~~vsr~v~~L~~~-glI~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~ 127 (162)
T 3cjn_A 49 GLSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQAD-GLVRREVDSDDQRSSRVYLTPAGRAVYDRLWPHM 127 (162)
T ss_dssp TCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEC--CCSSEEEEECHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf 959999999999984799899999999897988999999999868-9668852268888667678988999999999999
Q ss_pred CCCCHH
Q ss_conf 221012
Q gi|254780282|r 75 HKLETT 80 (299)
Q Consensus 75 ~~~~~~ 80 (299)
....+-
T Consensus 128 ~~~~~~ 133 (162)
T 3cjn_A 128 RASHDR 133 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 34
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=97.47 E-value=0.00021 Score=43.66 Aligned_cols=73 Identities=19% Similarity=0.299 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHHHCC--HHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCEEEEECCCCCCCCCCC
Q ss_conf 888899999999998276--8999988289978999999999999588217976-------9946850013433222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSGS--FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-------ARGLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~gs--~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~-------~~~~~lT~~G~~l~~~a~~ 72 (299)
+++..++.++..+++.+. .+.=|+.+++++|+||+.|++||+ .-++.|. ...+.+|+.|+.+++.+..
T Consensus 44 gLt~~q~~vL~~l~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~---~GlV~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 120 (153)
T 2pex_A 44 DLTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQA---AGLVTRTRAASDERQVIIALTETGRALRSKAGA 120 (153)
T ss_dssp TCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHH---TTSEEEEC-------CEEEECHHHHHGGGGSTT
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH---CCCEEEECCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 97999999999998479989999999989688689999999998---899898118998874787889899999999999
Q ss_pred CCCCC
Q ss_conf 22221
Q gi|254780282|r 73 VYHKL 77 (299)
Q Consensus 73 ~l~~~ 77 (299)
+....
T Consensus 121 ~~~~~ 125 (153)
T 2pex_A 121 VPEQV 125 (153)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 35
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3}
Probab=97.42 E-value=0.00017 Score=44.16 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEE-------CCCCEEEEECCCCCCCCCCC
Q ss_conf 88889999999999827--6899998828997899999999999958821797-------69946850013433222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-------HARGLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R-------~~~~~~lT~~G~~l~~~a~~ 72 (299)
+++..++.++..+++.+ +.+.-|+.+++++|+||+.|++||+ .-|+.| ....+.||+.|+.+++.+..
T Consensus 37 glt~~q~~vL~~l~~~~~~t~~~La~~l~~~~~~is~~l~~L~~---~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~~ 113 (152)
T 3bj6_A 37 GVTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQR---AGLIERRTNPEHARSHRYWLTPRGEAIITAIRA 113 (152)
T ss_dssp TCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHH---TTSEEEECCSSSTTSCEEEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH---CCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 97999999999999879989999999989698799999999998---899774249988984534258989999999999
Q ss_pred CCCC
Q ss_conf 2222
Q gi|254780282|r 73 VYHK 76 (299)
Q Consensus 73 ~l~~ 76 (299)
....
T Consensus 114 ~~~~ 117 (152)
T 3bj6_A 114 DEMA 117 (152)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 36
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=97.41 E-value=0.00014 Score=44.70 Aligned_cols=75 Identities=25% Similarity=0.277 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-------CCEEEEECCCCCCCCCCC
Q ss_conf 88889999999999827--689999882899789999999999995882179769-------946850013433222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-------RGLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-------~~~~lT~~G~~l~~~a~~ 72 (299)
+++..++.++..+.+.| +.+.=|+.+++++++||+.|++||+. -|+.|.. ..+.+|+.|+.+++.+..
T Consensus 50 gLt~~q~~vL~~l~~~~~~t~~~la~~l~i~~~~vs~~i~~L~~~---glv~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 126 (161)
T 3e6m_A 50 KLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDE---GLAARSISDADQRKRTVVLTRKGKKKLAEISP 126 (161)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHT---TSEEECC---CCCSCEEEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEEEECCCCCCEEECCCCHHHHHHHHHHHH
T ss_conf 979999999999997799899999999897887999999999838---97798325899873110168889999999999
Q ss_pred CCCCCCH
Q ss_conf 2222101
Q gi|254780282|r 73 VYHKLET 79 (299)
Q Consensus 73 ~l~~~~~ 79 (299)
......+
T Consensus 127 ~~~~~~~ 133 (161)
T 3e6m_A 127 LINDFHA 133 (161)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 37
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus}
Probab=97.41 E-value=0.00016 Score=44.27 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHHC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-----CCEEEEECCCCCCCCCCC
Q ss_conf 88889999999999827----689999882899789999999999995882179769-----946850013433222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG----SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-----RGLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g----s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-----~~~~lT~~G~~l~~~a~~ 72 (299)
+++..+..++..+++++ +.+.-|+.+++++|+||+.|++||+. |.--..++. +.+.||+.|+.+++.+..
T Consensus 28 glt~~q~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~v~~L~~~-glv~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 106 (139)
T 3eco_A 28 DITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERK-KLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTS 106 (139)
T ss_dssp TCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEECCC--CCEEEEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEECCCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 98999999999998359999699999999896887899999999978-89785167899884675789889999999999
Q ss_pred CCCCCCHH
Q ss_conf 22221012
Q gi|254780282|r 73 VYHKLETT 80 (299)
Q Consensus 73 ~l~~~~~~ 80 (299)
......+-
T Consensus 107 ~~~~~~~~ 114 (139)
T 3eco_A 107 IFDEMEQT 114 (139)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 38
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=97.39 E-value=0.00012 Score=44.93 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHHC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCEEEEECCCCCCCCC
Q ss_conf 88889999999999827----68999988289978999999999999588217976-------99468500134332222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG----SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-------ARGLTLTEQGSKLHRVT 70 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g----s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~-------~~~~~lT~~G~~l~~~a 70 (299)
+++..+..++..+...+ +++.=|+.+++++|+||+.|++||+. -|+.|. ...+.||+.|+.+++.+
T Consensus 38 ~Lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~i~~stvs~~v~~Le~~---glI~r~~~~~D~R~~~l~LT~kG~~~~~~~ 114 (189)
T 3nqo_A 38 ILTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKN---GYVDVIPSPHDKRAINVKVTDLGKKVMVTC 114 (189)
T ss_dssp SSCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT---TSEEEEECSSCSSCEEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCCEEEECCCCCCEEEEEECHHHHHHHHHH
T ss_conf 99999999999998478999099999999896886999999999987---986374326765401346788899999999
Q ss_pred CCCCCCCC
Q ss_conf 22222210
Q gi|254780282|r 71 SEVYHKLE 78 (299)
Q Consensus 71 ~~~l~~~~ 78 (299)
........
T Consensus 115 ~~~~~~~~ 122 (189)
T 3nqo_A 115 SRTGINFM 122 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 39
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A 3mex_A
Probab=97.37 E-value=0.00011 Score=45.31 Aligned_cols=74 Identities=19% Similarity=0.283 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-------CCEEEEECCCCCCCCCCC
Q ss_conf 88889999999999827--689999882899789999999999995882179769-------946850013433222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-------RGLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-------~~~~lT~~G~~l~~~a~~ 72 (299)
+++..++.++..+++.+ +.+.-|+.+++++|+||+.|++||+ .-++.|.. ..+.+|+.|+.+++.+..
T Consensus 34 ~lt~~q~~iL~~l~~~~~~t~~~La~~l~i~~~~vsr~l~~L~~---~g~v~r~~~~~D~R~~~l~lT~~G~~~~~~~~~ 110 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEG---RNLVRRERNPSDQRSFQLFLTDEGLAIHLHAEL 110 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHH---TTSEEC----------CCEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH---CCCCEEECCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 97999999999999779989999999989698799999999998---798535037888874565788889999999999
Q ss_pred CCCCCC
Q ss_conf 222210
Q gi|254780282|r 73 VYHKLE 78 (299)
Q Consensus 73 ~l~~~~ 78 (299)
......
T Consensus 111 ~~~~~~ 116 (142)
T 3ech_A 111 IMSRVH 116 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 40
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=97.32 E-value=0.00032 Score=42.56 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-----CCEEEEECCCCCCCCCCCCC
Q ss_conf 88889999999999827--689999882899789999999999995882179769-----94685001343322222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-----RGLTLTEQGSKLHRVTSEVY 74 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-----~~~~lT~~G~~l~~~a~~~l 74 (299)
+++..++.++..+.+++ +.+.-|+.+++++|+||+.|++||+. |.---.+++ ..+.+|+.|+.+++......
T Consensus 26 ~lt~~q~~vL~~i~~~~~~t~~eLa~~~~~~~~~vs~~v~~L~~~-glv~r~~~~~DrR~~~l~lT~~G~~l~~~~~~~~ 104 (138)
T 3bpv_A 26 NLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEES-GFIEREQDPENRRRYILEVTRRGEEIIPLILKVE 104 (138)
T ss_dssp TCCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEEEEECHHHHHTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEECCCCCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf 989999999999985899799999999897987999999999968-9878602899887568788989999999999999
Q ss_pred CCCCHH
Q ss_conf 221012
Q gi|254780282|r 75 HKLETT 80 (299)
Q Consensus 75 ~~~~~~ 80 (299)
....+.
T Consensus 105 ~~~~~~ 110 (138)
T 3bpv_A 105 ERWEDL 110 (138)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 41
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.32 E-value=0.0002 Score=43.72 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHHHC---CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-------CCEEEEECCCCCCCCCC
Q ss_conf 88889999999999827---689999882899789999999999995882179769-------94685001343322222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-------RGLTLTEQGSKLHRVTS 71 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g---s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-------~~~~lT~~G~~l~~~a~ 71 (299)
+++..+..++..+++.+ +.+.-|+.+++++|+||+.|++||+ .-++.|.. +.+.||+.|+.+++.+.
T Consensus 34 glt~~q~~iL~~l~~~~~~~t~~eL~~~~~~~~~~vs~~i~~L~~---~glI~r~~~~~D~R~~~i~LT~~G~~~~~~~~ 110 (146)
T 2fbh_A 34 GLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLES---QGLVRRLAVAEDRRAKHIVLTPKADVLIADIE 110 (146)
T ss_dssp CCTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHH---TTSEEEECCBTTBCSCEEEECTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH---CCCEEECCCCCCCCEEEEEECHHHHHHHHHHH
T ss_conf 989999999999986799999999999989689899999999963---98778636789989568788988999999999
Q ss_pred CCCCCCC
Q ss_conf 2222210
Q gi|254780282|r 72 EVYHKLE 78 (299)
Q Consensus 72 ~~l~~~~ 78 (299)
.......
T Consensus 111 ~~~~~~~ 117 (146)
T 2fbh_A 111 AIAASVR 117 (146)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 42
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=97.30 E-value=0.00028 Score=42.92 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCC-------CEEEEECCCCCCCCCCC
Q ss_conf 88889999999999827--6899998828997899999999999958821797699-------46850013433222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR-------GLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~-------~~~lT~~G~~l~~~a~~ 72 (299)
+++..++.++..+.+.| +.+.=|+.+++++++||+.|++||+. -|+.|.+. -+.+|+.|+.+++....
T Consensus 28 gls~~~~~iL~~l~~~~~~t~~~la~~l~~~~~~vs~~i~~L~~~---glv~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 104 (145)
T 3g3z_A 28 DLNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQ---GLIEWQEGEQDRRKRLLSLTETGKAYAAPLTE 104 (145)
T ss_dssp TCCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEECCCSSCGGGSCEEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 989999999999998799499999999896988999999999857---98798576888774687889879999999999
Q ss_pred CCCCCCH
Q ss_conf 2222101
Q gi|254780282|r 73 VYHKLET 79 (299)
Q Consensus 73 ~l~~~~~ 79 (299)
......+
T Consensus 105 ~~~~~~~ 111 (145)
T 3g3z_A 105 SAQEFSD 111 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 43
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=97.30 E-value=8.2e-05 Score=45.98 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-----CCEEEEECCCCCCCCCCCCC
Q ss_conf 88889999999999827--689999882899789999999999995882179769-----94685001343322222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-----RGLTLTEQGSKLHRVTSEVY 74 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-----~~~~lT~~G~~l~~~a~~~l 74 (299)
+++..++.++..+++.+ +.+.-|+.++++.|+||+.+++||+. |.---.+.+ ..+.+|+.|+.+++.+...+
T Consensus 26 glt~~q~~vL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~-g~i~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~ 104 (144)
T 1lj9_A 26 SLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQ-GFIYRQEDASNKKIKRIYATEKGKNVYPIIVREN 104 (144)
T ss_dssp TCTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEECCCCCCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 989999999999984899799999999897888999999999968-9863114888888002258889999999999999
Q ss_pred CCCCHH
Q ss_conf 221012
Q gi|254780282|r 75 HKLETT 80 (299)
Q Consensus 75 ~~~~~~ 80 (299)
......
T Consensus 105 ~~~~~~ 110 (144)
T 1lj9_A 105 QHSNQV 110 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 44
>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV}
Probab=97.26 E-value=0.00023 Score=43.41 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHHCCH--HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-----CCEEEEECCCCCCCCCCCCC
Q ss_conf 8888999999999982768--9999882899789999999999995882179769-----94685001343322222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSGSF--THAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-----RGLTLTEQGSKLHRVTSEVY 74 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~gs~--s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-----~~~~lT~~G~~l~~~a~~~l 74 (299)
++++.+++++..+.+.|.. +.-|+.+++++|+||+.|++||+. |.---.++. ..+.+|+.|+.++..+....
T Consensus 42 ~LT~~q~~vL~~l~~~~~~~~~eLa~~l~i~~~~vs~~l~~Le~~-GlV~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~ 120 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGA-ELIDRLPHPTSRRELLAALTKRGRDVVRQVTEHR 120 (168)
T ss_dssp SCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHT-TSEEEEECSSCSSCEEEEECHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC-CEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf 989999999999996799699999999896988999999998164-4278653377885478877887999999999999
Q ss_pred CCC
Q ss_conf 221
Q gi|254780282|r 75 HKL 77 (299)
Q Consensus 75 ~~~ 77 (299)
...
T Consensus 121 ~~~ 123 (168)
T 2nyx_A 121 RTE 123 (168)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 45
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa}
Probab=97.21 E-value=0.00027 Score=43.01 Aligned_cols=75 Identities=9% Similarity=0.123 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC--C-----CCEEEEECCCCCCCCCCC
Q ss_conf 88889999999999827--68999988289978999999999999588217976--9-----946850013433222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH--A-----RGLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~--~-----~~~~lT~~G~~l~~~a~~ 72 (299)
+++..+..++..+++.+ +.+.-|+.+++++++||+.|++||+ .-++.|. + ..+.||+.|+.+++.+..
T Consensus 35 glt~~q~~vL~~l~~~~~~t~~eLa~~~~~~~~~vs~~i~~L~~---~glv~r~~~~~D~R~~~l~lT~~G~~~~~~~~~ 111 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDK---RGLIQRSADPDDGRRLLVSLSPAGRAELEAGLA 111 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHH---TTCEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHH---CCCEEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 98999999999999879909999999878573529999999973---896697227999886788889889999999999
Q ss_pred CCCCCCH
Q ss_conf 2222101
Q gi|254780282|r 73 VYHKLET 79 (299)
Q Consensus 73 ~l~~~~~ 79 (299)
......+
T Consensus 112 ~~~~~~~ 118 (140)
T 2nnn_A 112 AAREINR 118 (140)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 46
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=97.19 E-value=0.00032 Score=42.55 Aligned_cols=73 Identities=23% Similarity=0.301 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHCCH---HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf 999999999982768---9999882899789999999999995882179769-946850013433222222222210122
Q gi|254780282|r 6 DKLRVFYVVARSGSF---THAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-RGLTLTEQGSKLHRVTSEVYHKLETTQ 81 (299)
Q Consensus 6 ~~L~~f~~v~~~gs~---s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a~~~l~~~~~~~ 81 (299)
+-|++++.+.+.|.. +.-|+.|++|+|+||+.|++|++. -|+.+.+ +++.||+.|+.....+.+--..++.+.
T Consensus 10 ~YL~~Iy~L~e~~~~v~~~~iA~~L~vs~~svt~~l~~L~~~---Gli~~~~~~~v~LT~~G~~~A~~i~rrHrl~E~fL 86 (226)
T 2qq9_A 10 MYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERD---GLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLL 86 (226)
T ss_dssp HHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEECTTSBEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999964996519999999689917999999999988---99897289787989889999999999999999999
No 47
>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=97.17 E-value=0.00015 Score=44.45 Aligned_cols=73 Identities=16% Similarity=0.263 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHHC---CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-------CCEEEEECCCCCCCCCC
Q ss_conf 88889999999999827---689999882899789999999999995882179769-------94685001343322222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-------RGLTLTEQGSKLHRVTS 71 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g---s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-------~~~~lT~~G~~l~~~a~ 71 (299)
.++..++.++..+++.+ +++.-|+.+++++++||+.|++||+. -|+.|.. ..+.+|+.|+.+++.+.
T Consensus 44 glt~~q~~vL~~L~~~~~~~t~~~La~~~~v~~~~vs~~i~~Le~~---Glv~r~~~~~DrR~~~v~lT~~G~~~~~~~~ 120 (160)
T 3boq_A 44 GLSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKD---GMVVKAMSADDRRSFSAKLTDAGLTTFKQAS 120 (160)
T ss_dssp SCCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHH---TSEEEC--------CEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHH
T ss_conf 9299999999999868999989999999896885899999999867---9879877688887578877888999999999
Q ss_pred CCCCCC
Q ss_conf 222221
Q gi|254780282|r 72 EVYHKL 77 (299)
Q Consensus 72 ~~l~~~ 77 (299)
......
T Consensus 121 ~~~~~~ 126 (160)
T 3boq_A 121 EAHNRI 126 (160)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 48
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=97.13 E-value=0.00015 Score=44.39 Aligned_cols=73 Identities=21% Similarity=0.151 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHHC-----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-------CCEEEEECCCCCCCC
Q ss_conf 88889999999999827-----689999882899789999999999995882179769-------946850013433222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG-----SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-------RGLTLTEQGSKLHRV 69 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g-----s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-------~~~~lT~~G~~l~~~ 69 (299)
+++.-++.++..+.+.| +.+.=|+.+++++++||+.|++||+. -|+.|.. +.+.+|+.|+.+++.
T Consensus 66 GLt~~q~~vL~~L~~~~~~~~lt~~eLa~~l~~s~~~vs~~l~~Le~~---GlV~r~~~~~DrR~~~l~LT~~G~~l~~~ 142 (181)
T 2fbk_A 66 GLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEK---GLIERREDERDRRSASIRLTPQGRALVTH 142 (181)
T ss_dssp TCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHH---TSEECCC-------CCBEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEECCCCCCCCEEECCCCHHHHHHHHH
T ss_conf 979999999999985099999099999999787875799999999987---88243578778862211328889999999
Q ss_pred CCCCCCCC
Q ss_conf 22222221
Q gi|254780282|r 70 TSEVYHKL 77 (299)
Q Consensus 70 a~~~l~~~ 77 (299)
+.......
T Consensus 143 ~~~~~~~~ 150 (181)
T 2fbk_A 143 LLPAHLAT 150 (181)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 49
>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=97.13 E-value=0.00097 Score=39.75 Aligned_cols=75 Identities=16% Similarity=0.284 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHHHCC--HHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-------CCEEEEECCCCCCCCCC
Q ss_conf 9888899999999998276--89999882899789999999999995882179769-------94685001343322222
Q gi|254780282|r 1 MSFDWDKLRVFYVVARSGS--FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-------RGLTLTEQGSKLHRVTS 71 (299)
Q Consensus 1 m~md~~~L~~f~~v~~~gs--~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-------~~~~lT~~G~~l~~~a~ 71 (299)
++++..+..++..++..+. .+.=|+.+++++|++|+.|++||+. -++.|.+ ..+.+|+.|+.+++.+.
T Consensus 36 ~glt~~q~~vL~~l~~~~~~t~~eLa~~~~i~~~tit~~i~~L~~~---g~v~r~~~~~D~R~~~l~lT~~G~~~~~~~~ 112 (147)
T 1z91_A 36 LNITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQ---GLITRKRSEEDERSVLISLTEDGALLKEKAV 112 (147)
T ss_dssp TCCCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHH---TSEECCBCSSCTTSBEEEECHHHHSGGGGTT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHH
T ss_conf 6989999999999997799499999999797887899999999988---9979867788775468788988999999999
Q ss_pred CCCCCCC
Q ss_conf 2222210
Q gi|254780282|r 72 EVYHKLE 78 (299)
Q Consensus 72 ~~l~~~~ 78 (299)
.+...+.
T Consensus 113 ~~~~~~~ 119 (147)
T 1z91_A 113 DIPGTIL 119 (147)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 50
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=97.13 E-value=0.00048 Score=41.56 Aligned_cols=68 Identities=19% Similarity=0.312 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC---------CCCEEEEECCCCCCCCC
Q ss_conf 88889999999999827--68999988289978999999999999588217976---------99468500134332222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH---------ARGLTLTEQGSKLHRVT 70 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~---------~~~~~lT~~G~~l~~~a 70 (299)
+++..++.++..+++.+ +.+.=|+.+++++|+||+.|++||+. -++.|. ...+.||+.|+.+++.+
T Consensus 38 glt~~q~~vL~~L~~~~~~t~~~La~~l~~~~~tvs~~v~~L~~~---glV~r~~~~~~~DrR~~~l~LT~~G~~~~~~~ 114 (154)
T 2qww_A 38 GLTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISL---GLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRS 114 (154)
T ss_dssp TCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEESCC--CTTCTTCEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEEEECCCCCCCCEEEECCCHHHHHHHHHH
T ss_conf 989999999999997799899999999797875799999999978---99799601566765610103488899999999
Q ss_pred CC
Q ss_conf 22
Q gi|254780282|r 71 SE 72 (299)
Q Consensus 71 ~~ 72 (299)
..
T Consensus 115 ~~ 116 (154)
T 2qww_A 115 TA 116 (154)
T ss_dssp HS
T ss_pred HH
T ss_conf 99
No 51
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=97.12 E-value=0.00059 Score=41.01 Aligned_cols=75 Identities=16% Similarity=0.133 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCEEEEECCCCCCCCCCC
Q ss_conf 88889999999999827--68999988289978999999999999588217976-------9946850013433222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-------ARGLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~-------~~~~~lT~~G~~l~~~a~~ 72 (299)
+++..++.++..+.+.+ +.+.=|+.+++++|+||+.|++||+. .++.|. ...+.+|+.|+.+++.+..
T Consensus 34 glt~~q~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~i~~L~~~---g~v~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 110 (143)
T 3oop_A 34 DVTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRK---ELIVREISTEDRRISLLSLTDKGRKETTELRD 110 (143)
T ss_dssp SSCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEEEC----CCSCEEEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 999999999999986899799999999896997999999999756---77434105899894476889899999999999
Q ss_pred CCCCCCH
Q ss_conf 2222101
Q gi|254780282|r 73 VYHKLET 79 (299)
Q Consensus 73 ~l~~~~~ 79 (299)
.......
T Consensus 111 ~~~~~~~ 117 (143)
T 3oop_A 111 IVEASCE 117 (143)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 52
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=97.08 E-value=0.00059 Score=41.00 Aligned_cols=73 Identities=27% Similarity=0.305 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHC---CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf 9999999999827---689999882899789999999999995882179769-946850013433222222222210122
Q gi|254780282|r 6 DKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-RGLTLTEQGSKLHRVTSEVYHKLETTQ 81 (299)
Q Consensus 6 ~~L~~f~~v~~~g---s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a~~~l~~~~~~~ 81 (299)
+-|++.+.+.+.| +.+.-|+.|++++|+||+.|++|++. -|+...+ +++.||+.|+........--..++.+.
T Consensus 10 ~YL~~Iy~l~~~~~~~~~~~lA~~L~vs~~sv~~~l~~L~~~---Glv~~~~~~~i~LT~~G~~~A~~i~rrHrl~e~fL 86 (230)
T 1fx7_A 10 MYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERD---GLLRVAGDRHLELTEKGRALAIAVMRKHRLAERLL 86 (230)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEECTTSCEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999864997619999998788928999999999888---89898189888988899999999999999999999
No 53
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=97.07 E-value=0.0007 Score=40.60 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHH-HCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEE
Q ss_conf 8899999999998-27689999882899789999999999995882179769946850
Q gi|254780282|r 4 DWDKLRVFYVVAR-SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 (299)
Q Consensus 4 d~~~L~~f~~v~~-~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT 60 (299)
|-..|+.+..+++ ..+++.-|+.+++|||+||+|++.|++. |.--..|.|+.+.-+
T Consensus 45 dp~Rl~Il~~L~~~~~~v~ela~~l~~s~stvS~HL~~L~~a-GlV~~~r~Gr~~~Y~ 101 (122)
T 1r1t_A 45 DPNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRNL-RLVSYRKQGRHVYYQ 101 (122)
T ss_dssp CHHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CEEEEEEECCEEEEE
T ss_conf 999999999998299769999999891988899999999988-933689873789999
No 54
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=97.05 E-value=0.00061 Score=40.92 Aligned_cols=75 Identities=24% Similarity=0.285 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHHHH---CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEE-------CCCCEEEEECCCCCCCCCC
Q ss_conf 8888999999999982---76899998828997899999999999958821797-------6994685001343322222
Q gi|254780282|r 2 SFDWDKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-------HARGLTLTEQGSKLHRVTS 71 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~---gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R-------~~~~~~lT~~G~~l~~~a~ 71 (299)
+++..+..++..+++. -+.+.-|+.+++++|+||+.|++||+. .|+.| ..+.+.||+.|+.++..+.
T Consensus 50 gLt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~stvsr~v~~L~~~---GlI~r~~~~~DrR~~~v~LT~~G~~~~~~~~ 126 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDK---GLISRQTCASDRRAKRIKLTEKAEPLIAEME 126 (166)
T ss_dssp TCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHT---TSEEEC--------CEEEECGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEEECCCCCCCEEEEEECHHHHHHHHHHH
T ss_conf 9899999999999976989799999999798998999999999858---9888613168988578777876999999999
Q ss_pred CCCCCCCH
Q ss_conf 22222101
Q gi|254780282|r 72 EVYHKLET 79 (299)
Q Consensus 72 ~~l~~~~~ 79 (299)
+......+
T Consensus 127 ~~~~~~~~ 134 (166)
T 3deu_A 127 EVIHKTRG 134 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 55
>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=97.01 E-value=0.00043 Score=41.80 Aligned_cols=72 Identities=24% Similarity=0.333 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCEEEEECCCCCCCCCCC
Q ss_conf 88889999999999827--68999988289978999999999999588217976-------9946850013433222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-------ARGLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~-------~~~~~lT~~G~~l~~~a~~ 72 (299)
+|+..++.++..+++.| +++.=|+.+++++|+||+.|++||+. -++.|. ...+.||+.|+.++..+..
T Consensus 41 ~ls~~q~~vL~~l~~~~~~t~~eLa~~l~i~~~tvs~~i~~L~~~---g~v~r~~~~~DrR~~~l~lT~~G~~~~~~~~~ 117 (154)
T 2eth_A 41 DMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKR---GLVVREMDPVDRRTYRVVLTEKGKEIFGEILS 117 (154)
T ss_dssp HSBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHT---TSEEEEECTTTSSCEEEEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 999999999999998699499999999897988999999999988---89021035555640120058989999999999
Q ss_pred CCCC
Q ss_conf 2222
Q gi|254780282|r 73 VYHK 76 (299)
Q Consensus 73 ~l~~ 76 (299)
....
T Consensus 118 ~~~~ 121 (154)
T 2eth_A 118 NFES 121 (154)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 56
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=96.97 E-value=0.00053 Score=41.31 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCEEEEECCCCCCCCCCC
Q ss_conf 88889999999999827--68999988289978999999999999588217976-------9946850013433222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-------ARGLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~-------~~~~~lT~~G~~l~~~a~~ 72 (299)
+++..+...+..+++.+ +++.-|+.+++++++||+.|++||+. -|+.|. .+.+.+|+.|+.++.....
T Consensus 46 glt~~q~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~---glv~r~~~~~DrR~~~i~LT~~G~~~~~~~~~ 122 (162)
T 2fa5_A 46 GMAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLER---GFIRRETHGDDRRRSMLALSPAGRQVYETVAP 122 (162)
T ss_dssp CCCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEC---------CCCEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEECCCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 979999999999986799899999999787871599999999857---98730457898885665789889999999999
Q ss_pred CCCC
Q ss_conf 2222
Q gi|254780282|r 73 VYHK 76 (299)
Q Consensus 73 ~l~~ 76 (299)
....
T Consensus 123 ~~~~ 126 (162)
T 2fa5_A 123 LVNE 126 (162)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 57
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A
Probab=96.95 E-value=0.00044 Score=41.75 Aligned_cols=73 Identities=18% Similarity=0.329 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-------CCEEEEECCCCCCCCCCC
Q ss_conf 88889999999999827--689999882899789999999999995882179769-------946850013433222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-------RGLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-------~~~~lT~~G~~l~~~a~~ 72 (299)
+++..+..++..+++.+ +.+.=|+.+++++|+||+.|++||+. -++.|.+ +.+.+|+.|+.+++.+.+
T Consensus 33 glt~~q~~vL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~---glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~ 109 (140)
T 3hsr_A 33 DLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKK---DYVVRTREEKDERNLQISLTEQGKAIKSPLAE 109 (140)
T ss_dssp TCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEEEC-------CEEEECHHHHHTHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 999999999999986799899999999897864799999999727---97798215888886888889889999999999
Q ss_pred CCCCC
Q ss_conf 22221
Q gi|254780282|r 73 VYHKL 77 (299)
Q Consensus 73 ~l~~~ 77 (299)
+....
T Consensus 110 ~~~~~ 114 (140)
T 3hsr_A 110 ISVKV 114 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 58
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=96.95 E-value=0.00086 Score=40.07 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHH-CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-----CCEEEEECCCCCCCCCCCCCC
Q ss_conf 8888999999999982-7689999882899789999999999995882179769-----946850013433222222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARS-GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-----RGLTLTEQGSKLHRVTSEVYH 75 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~-gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-----~~~~lT~~G~~l~~~a~~~l~ 75 (299)
+++..++.++..+++. -+.+.-|+.+++++|+||+.|++||+. |.--..+++ ..+.||+.|+.+++.+.+...
T Consensus 34 ~lt~~q~~vL~~i~~~~~t~~ela~~~~i~~~~vs~~i~~L~~~-g~v~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~ 112 (146)
T 2gxg_A 34 NLSYLDFLVLRATSDGPKTMAYLANRYFVTQSAITASVDKLEEM-GLVVRVRDREDRRKILIEITEKGLETFNKGIEIYK 112 (146)
T ss_dssp TCCHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHT-TSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEECCCCCCCHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 97999999999998599199999999897986999999999868-89786078767750443058989999999999999
Q ss_pred CCCH
Q ss_conf 2101
Q gi|254780282|r 76 KLET 79 (299)
Q Consensus 76 ~~~~ 79 (299)
....
T Consensus 113 ~~~~ 116 (146)
T 2gxg_A 113 KLAN 116 (146)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 59
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=96.94 E-value=0.0008 Score=40.25 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHH--CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCC----CEEEEECCCCCCCCCCC
Q ss_conf 88999999999982--76899998828997899999999999958821797699----46850013433222222
Q gi|254780282|r 4 DWDKLRVFYVVARS--GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR----GLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 4 d~~~L~~f~~v~~~--gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~----~~~lT~~G~~l~~~a~~ 72 (299)
|-.+++.+..+.+. -+++.-|+.+++|++++|+++++||+.==+.-....+. -+.+|+.|+..++...+
T Consensus 15 ~p~r~~IL~~L~~~~~~t~~eLa~~l~is~~~vs~~l~~Le~~glV~~~~~~~d~r~~~~~LT~~G~~~~~~~~~ 89 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLS 89 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCCEEECCCCHHHHHHHHHHHH
T ss_conf 999999999985189983999999989199899999999985890699874888973100359999999999999
No 60
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A
Probab=96.91 E-value=0.00054 Score=41.23 Aligned_cols=76 Identities=11% Similarity=0.241 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHHC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCEEEEECCCCCCCCCCCC
Q ss_conf 88889999999999827-68999988289978999999999999588217976-------99468500134332222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG-SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-------ARGLTLTEQGSKLHRVTSEV 73 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g-s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~-------~~~~~lT~~G~~l~~~a~~~ 73 (299)
+++..+..++..+...+ +.+.-|+.+++++|+||+.|++||+. |.--..|. ...+.||+.|+.+++.+...
T Consensus 35 glt~~q~~iL~~l~~~~~t~~~la~~l~i~~~~vs~~i~~L~~~-glv~r~r~~d~~D~R~~~l~LT~~G~~~~~~~~~~ 113 (151)
T 3kp7_A 35 GISAEQSHVLNMLSIEALTVGQITEKQGVNKAAVSRRVKKLLNA-ELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERKAI 113 (151)
T ss_dssp TCCHHHHHHHHHHHHSCBCHHHHHHHHCSCSSHHHHHHHHHHHT-TSEEC-----------CCBEECHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999986289999999999896888999999999888-98301467765442244204678899999999999
Q ss_pred CCCCC
Q ss_conf 22210
Q gi|254780282|r 74 YHKLE 78 (299)
Q Consensus 74 l~~~~ 78 (299)
.....
T Consensus 114 ~~~~~ 118 (151)
T 3kp7_A 114 MSHIA 118 (151)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 61
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=96.90 E-value=0.00067 Score=40.70 Aligned_cols=75 Identities=15% Similarity=0.278 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-------CCEEEEECCCCCCCCCCC
Q ss_conf 88889999999999827--689999882899789999999999995882179769-------946850013433222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-------RGLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-------~~~~lT~~G~~l~~~a~~ 72 (299)
+++..++.++..+++.| +.+.-|+.+++++++||+.|++||+ .-|+.|.+ +.+.||+.|+.+++.+..
T Consensus 34 glt~~q~~vL~~i~~~~~~t~~~la~~l~~~~~~vs~~l~~L~~---~gli~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 110 (142)
T 2bv6_A 34 NLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQ---VDLIKRERSEVDQREVFIHLTDKSETIRPELSN 110 (142)
T ss_dssp TCCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHH---TTSEEEEECSSSTTCEEEEECHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH---CCCEEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 97999999999999779989999999989798799999999998---899798337888875564478879999999999
Q ss_pred CCCCCCH
Q ss_conf 2222101
Q gi|254780282|r 73 VYHKLET 79 (299)
Q Consensus 73 ~l~~~~~ 79 (299)
....+.+
T Consensus 111 ~~~~~~~ 117 (142)
T 2bv6_A 111 ASDKVAS 117 (142)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999998
No 62
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis}
Probab=96.87 E-value=0.002 Score=37.90 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEE
Q ss_conf 889999999999827--6899998828997899999999999958821797699468
Q gi|254780282|r 4 DWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58 (299)
Q Consensus 4 d~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~ 58 (299)
|-..++.+..+++.| +++.-|+.+++|||+||+|++.|+ . |.--..|.|+.+-
T Consensus 26 ~p~Rl~Il~~L~~~~~~~v~el~~~l~~s~stvS~HL~~L~-a-glV~~~r~G~~~~ 80 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMR-G-KVLKRNRQGLEIY 80 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHB-T-TTBEEEEETTEEE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH-H-CCCEEEEECCEEE
T ss_conf 99999999999778992799989988849769999999999-2-9873898758899
No 63
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.86 E-value=0.0014 Score=38.87 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-----CCEEEEECCCCCCCCCCCCC
Q ss_conf 88889999999999827--689999882899789999999999995882179769-----94685001343322222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-----RGLTLTEQGSKLHRVTSEVY 74 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-----~~~~lT~~G~~l~~~a~~~l 74 (299)
+++..++.++..+++.| +++.=|+++++++++||+.|++||+. |.--..+.+ ..+.+|+.|+.+++.+....
T Consensus 33 glt~~q~~vL~~l~~~~~~~~~~la~~l~i~~~~vs~~i~~L~~~-glI~~~~~~~D~R~~~l~LT~~G~~~~~~~~~~~ 111 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERD-GIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSGDM 111 (142)
T ss_dssp TCCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf 989999999999998799799999999798988999999999958-9879830688988678788988999999999999
Q ss_pred CCC
Q ss_conf 221
Q gi|254780282|r 75 HKL 77 (299)
Q Consensus 75 ~~~ 77 (299)
...
T Consensus 112 ~~~ 114 (142)
T 2fbi_A 112 EKN 114 (142)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 64
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=96.85 E-value=0.00048 Score=41.56 Aligned_cols=73 Identities=21% Similarity=0.331 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHH-CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC--C-----CCEEEEECCCCCCCCCCCC
Q ss_conf 8888999999999982-768999988289978999999999999588217976--9-----9468500134332222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARS-GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH--A-----RGLTLTEQGSKLHRVTSEV 73 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~-gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~--~-----~~~~lT~~G~~l~~~a~~~ 73 (299)
+++..++.++..+++. .+.+.=|+.+++++|+||+.|++||+. | |+.|. + ..+.||+.|..+++.+...
T Consensus 34 ~lt~~q~~iL~~i~~~~~t~~~la~~~~~~~~tvs~~i~~L~~~-G--lv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 110 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPRSMVYLANRYFVTQSAITAAVDKLEAK-G--LVRRIRDSKDRRIVIVEITPKGRQVLLEANEV 110 (144)
T ss_dssp SCCHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHT-T--SEEEEEETTEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-C--CCEECCCCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 99999999999999199699999999897886899999999988-9--84444778888845767898999999999999
Q ss_pred CCCC
Q ss_conf 2221
Q gi|254780282|r 74 YHKL 77 (299)
Q Consensus 74 l~~~ 77 (299)
....
T Consensus 111 ~~~~ 114 (144)
T 3f3x_A 111 LRNL 114 (144)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 65
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexibility; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=96.85 E-value=0.0014 Score=38.91 Aligned_cols=48 Identities=29% Similarity=0.307 Sum_probs=39.5
Q ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEE--ECCCCCCCCCCCCCC
Q ss_conf 99827689999882899789999999999995882179769946850--013433222222222
Q gi|254780282|r 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT--EQGSKLHRVTSEVYH 75 (299)
Q Consensus 14 v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT--~~G~~l~~~a~~~l~ 75 (299)
|.++| -++||+.|||+|+|||+.|+. +|.+..| +.|....+.++..-.
T Consensus 11 v~~~G-Q~k~A~~lGV~q~AIsKAlra-------------gR~I~v~~~~DGs~~AeEirpFPs 60 (66)
T 2ovg_A 11 AMRFG-QTKTAKDLGVYPSSINQAIHA-------------GRKIFLTINADGSVYAEEVKPFPS 60 (66)
T ss_dssp HHHHC-HHHHHHHHTSCHHHHHHHHHH-------------TCEEEEEECTTSCEEEEEECCSCC
T ss_pred HHHHC-HHHHHHHCCCCHHHHHHHHHC-------------CCEEEEEECCCCCEEEEEEECCCC
T ss_conf 99978-599999909768999999975-------------981799986898388888404888
No 66
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=96.84 E-value=0.0026 Score=37.26 Aligned_cols=72 Identities=11% Similarity=0.148 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHHHCC--HHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-----CCEEEEECCCCCCCCCCCCC
Q ss_conf 888899999999998276--89999882899789999999999995882179769-----94685001343322222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSGS--FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-----RGLTLTEQGSKLHRVTSEVY 74 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~gs--~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-----~~~~lT~~G~~l~~~a~~~l 74 (299)
+++..++.++..+.+.+. .+.=|+.+++++|+||+.|++||+. |.---.+.+ ..+.+|+.|+.+++.+.+..
T Consensus 31 ~lt~~q~~vL~~l~~~~~~t~~ela~~~~~~~~~vs~~l~~L~~~-g~i~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~~ 109 (138)
T 1jgs_A 31 DITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCK-GWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLV 109 (138)
T ss_dssp TSCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEECTTCSSCEEEEECHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf 969999999999987799899999999897887999999999868-9779855688887568888988999999999999
No 67
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=96.82 E-value=0.0012 Score=39.29 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-------CCEEEEECCCCCCCCCCC
Q ss_conf 88889999999999827--689999882899789999999999995882179769-------946850013433222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-------RGLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-------~~~~lT~~G~~l~~~a~~ 72 (299)
+++..++.++..+++.| +++.-|+.+++++|+||+.|++||+. .|+.|.. ..+.||+.|+.+++.+..
T Consensus 34 glt~~q~~vL~~l~~~~~~t~~ela~~~~~~~~~vs~~l~~L~~~---glv~r~~~~~D~R~~~v~LT~~G~~~~~~~~~ 110 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQK---NLIARTHNTKDRRVIDLSLTDEGDIKFEEVLA 110 (155)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHT---TSEEEEECSSCTTSEEEEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH---HHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 989999999999998699799999999896998999999999862---42552023367752000248989999999999
Q ss_pred CCCCC
Q ss_conf 22221
Q gi|254780282|r 73 VYHKL 77 (299)
Q Consensus 73 ~l~~~ 77 (299)
.....
T Consensus 111 ~~~~~ 115 (155)
T 1s3j_A 111 GRKAI 115 (155)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 68
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=96.81 E-value=0.0014 Score=38.92 Aligned_cols=73 Identities=25% Similarity=0.281 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHC---CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf 9999999999827---689999882899789999999999995882179769-946850013433222222222210122
Q gi|254780282|r 6 DKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-RGLTLTEQGSKLHRVTSEVYHKLETTQ 81 (299)
Q Consensus 6 ~~L~~f~~v~~~g---s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a~~~l~~~~~~~ 81 (299)
+-|++++.+.+.+ +.+.=|+.|+||+|+||+.|++|++. -|+...+ +++.||+.|+.....+..--..++.+.
T Consensus 40 dYLe~Iy~L~~~~~~vr~~dIA~~L~vs~~sVs~~l~~L~~~---GlI~~~~~~~i~LT~~G~~~A~~i~rrHrlle~fL 116 (155)
T 2h09_A 40 DYVELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATM---GLIEMIPWRGVFLTAEGEKLAQESRERHQIVENFL 116 (155)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHT---TCEEEETTTEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999853897709999999698978999999999778---89875499875589859999999999999999999
No 69
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=96.76 E-value=0.00053 Score=41.31 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-----C--CCEEEEECCCCCCCCCC
Q ss_conf 988889999999999827--68999988289978999999999999588217976-----9--94685001343322222
Q gi|254780282|r 1 MSFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-----A--RGLTLTEQGSKLHRVTS 71 (299)
Q Consensus 1 m~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~-----~--~~~~lT~~G~~l~~~a~ 71 (299)
++++..++.++..+.+.+ +.+.=|+.+++++++||+.|++||+. -|+.|. + +.+.+|+.|+.++..+.
T Consensus 42 ~glt~~q~~vL~~l~~~~~~t~~~La~~l~~~~~~vs~~l~~L~~~---gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~ 118 (162)
T 3k0l_A 42 LEISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLAN---GWIEKAPDPTHGRRILVTVTPSGLDKLNQCN 118 (162)
T ss_dssp TTCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHT---TSEEEEECCSSSCCEEEEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHH
T ss_conf 5979999999999997799899999999896886999999999988---9979852799987568788988999999999
Q ss_pred CCCCCCCHH
Q ss_conf 222221012
Q gi|254780282|r 72 EVYHKLETT 80 (299)
Q Consensus 72 ~~l~~~~~~ 80 (299)
.........
T Consensus 119 ~~~~~~~~~ 127 (162)
T 3k0l_A 119 QVVQQLEAQ 127 (162)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 70
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=96.75 E-value=0.0011 Score=39.39 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-------CCEEEEECCCCCCCCCCC
Q ss_conf 88889999999999827--689999882899789999999999995882179769-------946850013433222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-------RGLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-------~~~~lT~~G~~l~~~a~~ 72 (299)
+++..+..++..+++.+ +.+.=|+.+++++++||+.|++||+. -|+.|.. ..+.||+.|+.+++.+..
T Consensus 40 gLt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~v~~L~~~---Glv~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 116 (155)
T 3cdh_A 40 GLRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDAR---GLVTRVADAKDKRRVRVRLTDDGRALAESLVA 116 (155)
T ss_dssp TCCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHT---TSEEECC------CCCEEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 969999999999985799699999999896998899999999968---97798315888886787889899999999999
Q ss_pred CCCCCCHH
Q ss_conf 22221012
Q gi|254780282|r 73 VYHKLETT 80 (299)
Q Consensus 73 ~l~~~~~~ 80 (299)
......+-
T Consensus 117 ~~~~~~~~ 124 (155)
T 3cdh_A 117 SARAHETR 124 (155)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 71
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.73 E-value=0.0017 Score=38.30 Aligned_cols=75 Identities=13% Similarity=0.144 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-----CCEEEEECCCCCCCCCCCCC
Q ss_conf 88889999999999827--689999882899789999999999995882179769-----94685001343322222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-----RGLTLTEQGSKLHRVTSEVY 74 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-----~~~~lT~~G~~l~~~a~~~l 74 (299)
+++..++.++..+.+.+ +.+.=|+.+++++|+||+.|++||+. |.--..+++ ..+.+|+.|+.+++.+....
T Consensus 30 gLt~~q~~vL~~i~~~~~~t~~ela~~~~~~~~~vs~~v~~L~~~-gli~~~~~~~DkR~~~i~lT~~G~~~~~~~~~~~ 108 (145)
T 2a61_A 30 GITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEAD-GYLTRTPDPADRRAYFLVITRKGEEVIEKVIERR 108 (145)
T ss_dssp TCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC-CEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf 979999999999987799899999999897987899999998528-9379967588988678788989999999999999
Q ss_pred CCC
Q ss_conf 221
Q gi|254780282|r 75 HKL 77 (299)
Q Consensus 75 ~~~ 77 (299)
...
T Consensus 109 ~~~ 111 (145)
T 2a61_A 109 ENF 111 (145)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 72
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.72 E-value=0.0028 Score=37.12 Aligned_cols=54 Identities=24% Similarity=0.399 Sum_probs=41.3
Q ss_pred HHHHHHHHHH-HHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEE
Q ss_conf 9999999999-827689999882899789999999999995882179769946850
Q gi|254780282|r 6 DKLRVFYVVA-RSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 (299)
Q Consensus 6 ~~L~~f~~v~-~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT 60 (299)
..++.+..++ ...+++.-|+.+++|||+||+|++.|++. |.--..|.|+.+.-.
T Consensus 27 ~Rl~Il~~L~~~~~~v~el~~~l~~s~s~vS~HL~~L~~a-glV~~~r~G~~~~Y~ 81 (106)
T 1r1u_A 27 NRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSV-HLVKAKRQGQSMIYS 81 (106)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEEEECCEEEEE
T ss_conf 9999999998299679999998765865899999999988-934899887889999
No 73
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=96.70 E-value=0.00078 Score=40.30 Aligned_cols=66 Identities=14% Similarity=0.228 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCEEEEECCCCCCCCC
Q ss_conf 88889999999999827----68999988289978999999999999588217976-------99468500134332222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG----SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-------ARGLTLTEQGSKLHRVT 70 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g----s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~-------~~~~~lT~~G~~l~~~a 70 (299)
++++.++..+..+++.. +++.-|+.+++++|+||+.|++||+. .|+.|. ..-+.+|+.|+.+++..
T Consensus 34 ~lt~~q~~iL~~l~~~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~---glI~r~~~~~D~R~~~i~lT~~G~~~~~~l 110 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQE---DYFDKKRNEHDERTVLILVNAQQRKKIESL 110 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHT---TSSCCBCCSSSSCCCEEECCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEEECCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 97999999999998289998789999999798873699999999978---977984037899858989998999999999
No 74
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=96.68 E-value=0.0015 Score=38.59 Aligned_cols=64 Identities=22% Similarity=0.305 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHCCHHH--HHHHHCC--CHHHHHHHHHHHHHHHCCEEEEECCCC-EEEEECCCCCCCC
Q ss_conf 88899999999998276899--9988289--978999999999999588217976994-6850013433222
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTH--AAEQLHL--SQSSISRQISGLETEVGIKLFYRHARG-LTLTEQGSKLHRV 69 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~--AA~~L~i--tq~avS~~i~~LE~~lg~~Lf~R~~~~-~~lT~~G~~l~~~ 69 (299)
|+.-+-+++..+.++|..+. -|+.++| |.++||+++++|++. -|+.+.++| +++|+.|+..++-
T Consensus 11 M~~~D~rILE~L~e~g~~t~~eIA~~lgi~~S~~~Vs~rl~~L~~~---GLve~~g~G~Y~iT~~G~~yL~g 79 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADH---DLLQPLANGVYVITEEGEAYLNG 79 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHT---TSEEECSTTCEEECHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHC---CCEEECCCCCEEECHHHHHHHHH
T ss_conf 4601999999999849999999999868884799999999999878---79566687007989668999987
No 75
>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12}
Probab=96.65 E-value=0.0023 Score=37.56 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCE
Q ss_conf 889999999999827--689999882899789999999999995882179769946
Q gi|254780282|r 4 DWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 (299)
Q Consensus 4 d~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~ 57 (299)
|-..++.+..+++.+ +++.=|+.+++|||+||+|++.|++ -|.--..|.|+.+
T Consensus 23 ~p~Rl~Il~~L~~~~~~~v~eLa~~l~~s~stvS~HL~~L~~-aglV~~~r~G~~~ 77 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRD-EGLIDSQRDAQRI 77 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHH-TTSEEEEECSSCE
T ss_pred CHHHHHHHHHHHCCCCEEHHHHHHHHCCCHHHHHHHHHHHHH-CCCEEEEEECCEE
T ss_conf 999999999985899907999774558598799999999998-8941699888999
No 76
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution; 1.70A {Pseudomonas fluorescens pf-5}
Probab=96.65 E-value=0.0019 Score=38.03 Aligned_cols=48 Identities=23% Similarity=0.327 Sum_probs=38.6
Q ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEE--ECCCCCCCCCCCCC
Q ss_conf 99827689999882899789999999999995882179769946850--01343322222222
Q gi|254780282|r 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT--EQGSKLHRVTSEVY 74 (299)
Q Consensus 14 v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT--~~G~~l~~~a~~~l 74 (299)
|.++|.=++||+.|||+|+|||+.|+. +|.+..| +.|....+.++..-
T Consensus 10 v~~~G~Q~k~A~~lGV~Q~AIsKAlra-------------gR~I~v~~~~DGs~~AeEirpFP 59 (67)
T 2pij_A 10 LEEHGTQSALAAALGVNQSAISQMVRA-------------GRSIEITLYEDGRVEANEIRPIP 59 (67)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHHT-------------TCCEEEEECTTSCEEEEEEEEEC
T ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHHC-------------CCEEEEEECCCCCEEEEEEECCC
T ss_conf 998385889999919758999999975-------------98179998689838888840588
No 77
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} SCOP: a.4.5.28
Probab=96.64 E-value=0.0015 Score=38.59 Aligned_cols=74 Identities=16% Similarity=0.288 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHHC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCEEEEECCCCCCCCC
Q ss_conf 88889999999999827----68999988289978999999999999588217976-------99468500134332222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG----SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-------ARGLTLTEQGSKLHRVT 70 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g----s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~-------~~~~~lT~~G~~l~~~a 70 (299)
+++..+..++..+++.+ +.+.=|+.+++++|+||+.|++||+. -++.|. ...+.+|+.|+.+++.+
T Consensus 31 glt~~q~~vL~~l~~~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~---glv~r~~~~~D~R~~~l~lT~~G~~~~~~~ 107 (141)
T 3bro_A 31 DLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK---KLLYRKVSGKDSRQKCLKLTKKANKLETII 107 (141)
T ss_dssp TCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEEEECSSCTTSEEEEECHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH---HHHHHHHHCCCCCEEEECCCHHHHHHHHHH
T ss_conf 98999999999998489999599999999897885899999999887---778866305798422211178789999999
Q ss_pred CCCCCCCC
Q ss_conf 22222210
Q gi|254780282|r 71 SEVYHKLE 78 (299)
Q Consensus 71 ~~~l~~~~ 78 (299)
........
T Consensus 108 ~~~~~~~~ 115 (141)
T 3bro_A 108 LSYMDSDQ 115 (141)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 78
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.61 E-value=0.0014 Score=38.81 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHH-C--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCEEEEECCCCCCCCCC
Q ss_conf 8888999999999982-7--68999988289978999999999999588217976-------994685001343322222
Q gi|254780282|r 2 SFDWDKLRVFYVVARS-G--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-------ARGLTLTEQGSKLHRVTS 71 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~-g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~-------~~~~~lT~~G~~l~~~a~ 71 (299)
+++..++.++..+++. | +.+.=|+.++++.++||+.|++||+. .++.|. ...+.+|+.|+.+++.+.
T Consensus 32 ~ls~~q~~vL~~i~~~~g~~t~~ela~~~~~~~~tvs~~l~~L~~~---glv~r~~~~~DrR~~~i~lT~~G~~~~~~~~ 108 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERG---GLIVRHADPQDGRRTRVSLSSEGRRNLYGNR 108 (147)
T ss_dssp HHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHT---TSEEEEC------CCEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEEEECCCCCCCCEEEECHHHHHHHHHHH
T ss_conf 9899999999999976999899999999897987999999999867---9668735788776200247888999999999
Q ss_pred CCCCC
Q ss_conf 22222
Q gi|254780282|r 72 EVYHK 76 (299)
Q Consensus 72 ~~l~~ 76 (299)
.....
T Consensus 109 ~~~~~ 113 (147)
T 2hr3_A 109 AKREE 113 (147)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 79
>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3}
Probab=96.58 E-value=0.0051 Score=35.58 Aligned_cols=44 Identities=16% Similarity=0.348 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 988889999999999827--68999988289978999999999999
Q gi|254780282|r 1 MSFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 1 m~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~ 44 (299)
|+||-.+.+.+..+.+-+ |++.-|+++|+|+++|+++|++||+.
T Consensus 5 ~~LD~~D~~Il~~L~~d~R~s~~eia~~lgls~~tv~~Ri~~L~~~ 50 (151)
T 2dbb_A 5 RKLDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp -CCCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 6761999999999988599999999999896999999999999967
No 80
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=96.52 E-value=0.0022 Score=37.67 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEE--C-----CCCEEEEECCCCCCCCCCC
Q ss_conf 88889999999999827--6899998828997899999999999958821797--6-----9946850013433222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR--H-----ARGLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R--~-----~~~~~lT~~G~~l~~~a~~ 72 (299)
+++..++.++..+++.| +.+.-|+.+++++|+||+.|++||+. -|+.| + ...+.+|+.|+.+++.+..
T Consensus 39 ~lt~~q~~vL~~l~~~~~~t~~~La~~l~~~~~~vs~~l~~L~~~---Gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 115 (150)
T 2rdp_A 39 PITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERN---GLVARVRDEHDRRVVRIRLLEKGERIIEEVIE 115 (150)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEEEECCC---CEEEEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 979999999999997799599999999896887899999999718---97798521689885786789899999999999
Q ss_pred CCCCC
Q ss_conf 22221
Q gi|254780282|r 73 VYHKL 77 (299)
Q Consensus 73 ~l~~~ 77 (299)
.....
T Consensus 116 ~~~~~ 120 (150)
T 2rdp_A 116 KRQRD 120 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 81
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=96.47 E-value=0.0024 Score=37.48 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=49.2
Q ss_pred HHHHHHHHHHC---CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf 99999999827---689999882899789999999999995882179769-946850013433222222222210122
Q gi|254780282|r 8 LRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-RGLTLTEQGSKLHRVTSEVYHKLETTQ 81 (299)
Q Consensus 8 L~~f~~v~~~g---s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a~~~l~~~~~~~ 81 (299)
|++++.+.+.+ +.+.=|+.|++|+|+||+.|++|++.= |+.+.+ +++.||+.|.........--..++.+.
T Consensus 8 L~~i~~l~~~~~~v~~~~iA~~l~vs~~sv~~~l~rL~~~g---~i~~~~~~~i~LT~~G~~~A~~i~r~hrl~e~fl 82 (214)
T 3hrs_A 8 LKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEE---LLIKDKKAGYLLTDLGLKLVSDLYRKHRLIEVFL 82 (214)
T ss_dssp HHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEETTTEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999997048977899999986899579999999999789---9897389777657879999999999999999999
No 82
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis 89}
Probab=96.45 E-value=0.0062 Score=35.11 Aligned_cols=74 Identities=14% Similarity=0.186 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC--C-----CCEEEEECCCCC-CCCCC
Q ss_conf 88889999999999827--68999988289978999999999999588217976--9-----946850013433-22222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH--A-----RGLTLTEQGSKL-HRVTS 71 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~--~-----~~~~lT~~G~~l-~~~a~ 71 (299)
+++..++.+...+.+.+ +.+.=|+.+++++|+||+.|++||+. -|+.|. + ..+.+|+.|+.. .+...
T Consensus 28 glt~~q~~vL~~l~~~~~~t~~~la~~l~i~~~tvs~~v~~L~~~---gli~r~~~~~D~R~~~i~lT~~G~~~~~~~~~ 104 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEES---GYIIRKRNPDNQREVLVWPTEQAREALITNPS 104 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEEEECSSSTTCEEEEECHHHHHHHTTSCC
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEECCCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 969999999999987799899999999896986899999999858---98784489999896687889889999999999
Q ss_pred CCCCCCC
Q ss_conf 2222210
Q gi|254780282|r 72 EVYHKLE 78 (299)
Q Consensus 72 ~~l~~~~ 78 (299)
.....++
T Consensus 105 ~~~~~~~ 111 (142)
T 3bdd_A 105 AHHQAIK 111 (142)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 83
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural genomics, protein structure initiative; 1.97A {Coccidioides immitis RS}
Probab=96.45 E-value=0.0048 Score=35.76 Aligned_cols=198 Identities=10% Similarity=0.036 Sum_probs=85.8
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHH-----CCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCC-------CC
Q ss_conf 233321110000000001356675420-----001222222---222222222222223456543211112-------23
Q gi|254780282|r 94 KLRIATTIDLGQNLLQGNLKEFLLLYP-----DIQIQLILD---NKDIDISMDYADCAIRLRKPIQSSSLI-------QR 158 (299)
Q Consensus 94 ~i~I~~~~~~~~~~l~~~l~~f~~~~P-----~i~i~i~~~---~~~~~l~~~~~Di~i~~~~~~~~~~l~-------~~ 158 (299)
+|+|+...+....++-.+..+|.+.|| +|+|++... .....+..|.+|+++.. .+....... ..
T Consensus 21 ~l~i~~gs~~~~~l~~~la~aF~k~~~~~~~tgi~V~~~~~GSg~~i~~l~~G~~Di~~ss-~~~~~~~~~~~~~~~~~~ 99 (294)
T 3cvg_A 21 QLRIGNGGAGQSGLVKELADAFIKSKVDSGSAPFKVAWYKSDTTVTINYLKDGIVDVGITY-SPVAERISIKHGISESPS 99 (294)
T ss_dssp EEEEEESHHHHHTHHHHHHHHHHHHHHSCC---CEEEEEECCHHHHHHHHHTTSCSEEEES-CHHHHHHHHHTTSBCSSC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCEEEEC-CCHHHHHHHHCCCCCCCE
T ss_conf 9999347732688999999999975532368983899996882999999865898468631-702368999738786523
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCCCC------------CCCCCCCCC--CCCCCCCCCHHHHHHHHCC-CCCCCCCCE
Q ss_conf 455-543321123443211122222211------------000112356--6433211000235665202-234321211
Q gi|254780282|r 159 KLV-TIHMHAYAAPHYLKNCREPLSIQE------------LDKHNLITF--GDLIPKCMEDFNWLATVDR-PIGEPRISC 222 (299)
Q Consensus 159 ~l~-~~~~~~v~~~~~~~~~~~~~~~~d------------L~~~~~i~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 222 (299)
.++ +...+++..+..+..........+ ..+.+...+ ................... .........
T Consensus 100 ~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~w~~~g~~~~~i~~~~r~~~sgt~~~~~~~~~~~~~~~~~~~~~~~ 179 (294)
T 3cvg_A 100 YYAFRDHFMLIGPPSNPAKLSGDSDIADMFSKMHDAAEAGNTKPPVRFLSRYDKSATNIKEAELWLSIGQVPWATAYSTW 179 (294)
T ss_dssp EEEEEEEEEEEECTTCTTCCCTTSCHHHHHHHHHHHHHHCCSSSCCCEEECCSSSHHHHHHHHHHHHTTCCTTSSSCCTT
T ss_pred EECCCCCEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 63256729998898865432332456677655323343147655613553566663468899999861778643334422
Q ss_pred E--EECCCCHHHHHHHHHCCEEEEEHHHHC------CCCCEEE---ECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 4--532420013567873842331177760------1998466---1776667660089993487788889999999999
Q gi|254780282|r 223 L--QVNSYLSIMQYCVLGSGIALLPDYIVK------DNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 (299)
Q Consensus 223 ~--~~~s~~~~~~~v~~g~Gia~lp~~~~~------~~~~lv~---i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~ 291 (299)
. ...........+..+.|.+........ ..+-... +.+...+..++++++..++...++.+++|+|||+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~v~i~k~~kn~~~Ak~Fidfll 259 (294)
T 3cvg_A 180 YHQYITFPIQALTAAILLREYTITDYGTYLSIPRGLRDQMVIYKKGTNDADDPLLNPAHLLVGARAKNAEMAKEFAKWLV 259 (294)
T ss_dssp EEECCSCHHHHHHHHHHTTCEEEEEHHHHTTSCHHHHTTCEEEEECCSCTTCTTEEEEEEEEBSSCSSHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHCCCCCCEEEEEEEEEHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHC
T ss_conf 11045411344320344404897421100133213566501321255678864021468999689889499999999984
Q ss_pred H
Q ss_conf 9
Q gi|254780282|r 292 L 292 (299)
Q Consensus 292 ~ 292 (299)
+
T Consensus 260 S 260 (294)
T 3cvg_A 260 S 260 (294)
T ss_dssp S
T ss_pred C
T ss_conf 9
No 84
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987}
Probab=96.26 E-value=0.0017 Score=38.30 Aligned_cols=75 Identities=19% Similarity=0.341 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-----CCEEEEECCCCCCCCCCCCC
Q ss_conf 88889999999999827--689999882899789999999999995882179769-----94685001343322222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-----RGLTLTEQGSKLHRVTSEVY 74 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-----~~~~lT~~G~~l~~~a~~~l 74 (299)
+++..++.++..+++.+ +.+.=|+.+++++|+||+.|++||+. |.--..+.+ ..+.+|+.|+.+++.+....
T Consensus 30 ~lt~~q~~vL~~l~~~~~~t~~~La~~l~~~~~tvs~~l~~L~~~-gli~r~~~~~DrR~~~l~lT~~G~~~~~~~~~~~ 108 (139)
T 3bja_A 30 DISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRD-GYVMTEKNPNDQRETLVYLTKKGEETKKQVDVQY 108 (139)
T ss_dssp TCCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHT-TSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHC-CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf 989999999999998699899999847086888999999999988-9879830588988678788988999999999999
Q ss_pred CCC
Q ss_conf 221
Q gi|254780282|r 75 HKL 77 (299)
Q Consensus 75 ~~~ 77 (299)
...
T Consensus 109 ~~~ 111 (139)
T 3bja_A 109 SDF 111 (139)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 85
>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.24 E-value=0.0086 Score=34.28 Aligned_cols=52 Identities=15% Similarity=0.274 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf 889999999999827--68999988289978999999999999588217976994
Q gi|254780282|r 4 DWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56 (299)
Q Consensus 4 d~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~ 56 (299)
|-..|+.+..+++.| +++.=|+.+++|||+||+|++.|++ -|.--..|.|+.
T Consensus 41 dp~Rl~Il~~L~~~~~~~v~ela~~l~~s~s~vS~HL~~L~~-aGlV~~~r~Gr~ 94 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYK-QGVVNFRKEGKL 94 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHH-TTSEEEC----C
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH-CCCEEEEEECCE
T ss_conf 999999999998788927999999988873269999999998-890489998788
No 86
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=96.19 E-value=0.01 Score=33.78 Aligned_cols=46 Identities=24% Similarity=0.402 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 988889999999999827--68999988289978999999999999588
Q gi|254780282|r 1 MSFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGI 47 (299)
Q Consensus 1 m~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~ 47 (299)
|.||=-+.+.+..+.+-+ |++.=|+++|+|+++|.++|++||+. |+
T Consensus 1 m~lD~~D~~Il~~L~~n~R~s~~eiA~~~g~s~~tv~~Ri~rL~~~-Gi 48 (144)
T 2cfx_A 1 MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESF-GI 48 (144)
T ss_dssp CCCCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHT-TS
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CC
T ss_conf 9868899999999998389999999999892989999999999858-98
No 87
>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=96.14 E-value=0.01 Score=33.83 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 988889999999999827--68999988289978999999999999588
Q gi|254780282|r 1 MSFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGI 47 (299)
Q Consensus 1 m~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~ 47 (299)
|+||=.+.+.+..+.+-+ |++.-|+++|+|+++|.++|++||+. |+
T Consensus 13 i~LD~~D~~IL~~Lq~d~R~s~~eIA~~lgls~~tv~~Ri~rLe~~-Gv 60 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQER-GV 60 (171)
T ss_dssp -CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT-TS
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CC
T ss_conf 7749999999999998489999999999890999999999999978-96
No 88
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=96.05 E-value=0.0066 Score=34.92 Aligned_cols=73 Identities=11% Similarity=0.130 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHHC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-----CCEEEEECCCCCCCCCCC
Q ss_conf 88889999999999827----689999882899789999999999995882179769-----946850013433222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG----SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-----RGLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g----s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-----~~~~lT~~G~~l~~~a~~ 72 (299)
+++..++.++..+.+.. +++.-|+.+++++|+||+.|++||+ -|.---.|++ ..+.+|+.|+..++....
T Consensus 31 ~Lt~~q~~vL~~L~~~~~~~~~~~~la~~l~~~ks~vs~~l~~L~~-~g~I~r~~~~~D~R~~~i~lTe~g~~~i~~~~~ 109 (250)
T 1p4x_A 31 DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVK-HSYISKVRSKIDERNTYISISEEQREKIAERVT 109 (250)
T ss_dssp SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHH-TTSCEEEECSSSTTSEEEECCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH-CCCEEECCCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 9899999999999847999978999999968881069999999998-889886579888885899989999999999999
Q ss_pred CCC
Q ss_conf 222
Q gi|254780282|r 73 VYH 75 (299)
Q Consensus 73 ~l~ 75 (299)
.++
T Consensus 110 ~~~ 112 (250)
T 1p4x_A 110 LFD 112 (250)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 89
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum}
Probab=96.04 E-value=0.0019 Score=38.13 Aligned_cols=79 Identities=14% Similarity=0.173 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHHC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEE----EEECCCCEEEEECCCCCCCCCCCC
Q ss_conf 88889999999999827----6899998828997899999999999958821----797699468500134332222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG----SFTHAAEQLHLSQSSISRQISGLETEVGIKL----FYRHARGLTLTEQGSKLHRVTSEV 73 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g----s~s~AA~~L~itq~avS~~i~~LE~~lg~~L----f~R~~~~~~lT~~G~~l~~~a~~~ 73 (299)
+++..++.++..+++.+ +.+.-|+.++++.|++|+.|++||+.==+.- -+|....+.||+.|+.+++.+...
T Consensus 38 glt~~q~~vL~~L~~~~~~~it~~eLa~~l~~~~~~~sr~l~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 117 (148)
T 3jw4_A 38 GLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNNI 117 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 98999999999999379999399999999897785899999999988885105778888834768898899999999999
Q ss_pred CCCCCHH
Q ss_conf 2221012
Q gi|254780282|r 74 YHKLETT 80 (299)
Q Consensus 74 l~~~~~~ 80 (299)
.....+.
T Consensus 118 ~~~~~~~ 124 (148)
T 3jw4_A 118 FLEVEES 124 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 90
>3onq_A Regulator of polyketide synthase expression; structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Bifidobacterium adolescentis}
Probab=96.03 E-value=0.015 Score=32.92 Aligned_cols=13 Identities=0% Similarity=0.263 Sum_probs=6.2
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 8889999999999
Q gi|254780282|r 3 FDWDKLRVFYVVA 15 (299)
Q Consensus 3 md~~~L~~f~~v~ 15 (299)
|.++|-+.|..++
T Consensus 4 ~~~e~~~~~~~~~ 16 (262)
T 3onq_A 4 MNSEQADILDLLS 16 (262)
T ss_dssp -----CCHHHHHT
T ss_pred CHHHHHHHHHHHC
T ss_conf 1388899987534
No 91
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A
Probab=95.95 E-value=0.015 Score=32.81 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHH--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 98888999999999982--768999988289978999999999999
Q gi|254780282|r 1 MSFDWDKLRVFYVVARS--GSFTHAAEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 1 m~md~~~L~~f~~v~~~--gs~s~AA~~L~itq~avS~~i~~LE~~ 44 (299)
|+||=.+.+.+..+.+- -|++.-|+++|+|.++|.++|++||+.
T Consensus 6 ~~LD~~D~~Il~~L~~d~R~s~~eiA~~~gls~~tv~~Ri~rLe~~ 51 (162)
T 2p5v_A 6 LTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp CCCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 9808999999999998379999999999892999999999999857
No 92
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1}
Probab=95.94 E-value=0.0035 Score=36.50 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHH-C--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEE-------CCCCEEEEECCCCCCCCCCC
Q ss_conf 888999999999982-7--6899998828997899999999999958821797-------69946850013433222222
Q gi|254780282|r 3 FDWDKLRVFYVVARS-G--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-------HARGLTLTEQGSKLHRVTSE 72 (299)
Q Consensus 3 md~~~L~~f~~v~~~-g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R-------~~~~~~lT~~G~~l~~~a~~ 72 (299)
++..+..++..+++. + +.+.=|+.++++.|+||+.|++||+. -|+.| ..+.+.||+.|+.+++.+..
T Consensus 37 ls~~q~~iL~~l~~~~~~~t~~ela~~l~~~~~~vsr~v~~L~~~---glI~r~~~~~D~R~~~l~LT~~G~~l~~~~~~ 113 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEER---GLVVRTLDPSDRRNKLIAATEEGRRLRDDAKA 113 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTT---TSEEC-----------CEECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEEECCCCCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 799999999999985989899999999788787788999989764---76466018665661243058989999999999
Q ss_pred CCCCCCH
Q ss_conf 2222101
Q gi|254780282|r 73 VYHKLET 79 (299)
Q Consensus 73 ~l~~~~~ 79 (299)
......+
T Consensus 114 ~~~~~~~ 120 (150)
T 3fm5_A 114 RVDAAHG 120 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 93
>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=95.92 E-value=0.015 Score=32.86 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHH--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8888999999999982--768999988289978999999999999
Q gi|254780282|r 2 SFDWDKLRVFYVVARS--GSFTHAAEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~--gs~s~AA~~L~itq~avS~~i~~LE~~ 44 (299)
.||--+.+.+..+.+- .|+++-|+++|+|+++|.++|++||+.
T Consensus 24 ~LD~~D~~IL~~L~~d~R~s~~~iA~~lglS~~tV~~Ri~rL~~~ 68 (171)
T 2e1c_A 24 PLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRES 68 (171)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 865999999999998389999999999891999999999999847
No 94
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=95.76 E-value=0.021 Score=31.99 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=37.3
Q ss_pred CC--CCHHHHHHHHHHHHH--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 98--888999999999982--768999988289978999999999999
Q gi|254780282|r 1 MS--FDWDKLRVFYVVARS--GSFTHAAEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 1 m~--md~~~L~~f~~v~~~--gs~s~AA~~L~itq~avS~~i~~LE~~ 44 (299)
|+ ||=-+.+.+..+.+- .|++.-|+++|+|++||.++|++||+.
T Consensus 1 M~~~lD~~D~~Il~~L~~n~R~s~~~ia~~~gls~~tv~~Ri~rL~~~ 48 (150)
T 2w25_A 1 MNEALDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESR 48 (150)
T ss_dssp ---CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 950570999999999998389999999999892989999999999868
No 95
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50
Probab=95.75 E-value=0.018 Score=32.37 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHHH-C--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCEEEEECCCCCCCCC
Q ss_conf 8888999999999982-7--68999988289978999999999999588217976-------99468500134332222
Q gi|254780282|r 2 SFDWDKLRVFYVVARS-G--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-------ARGLTLTEQGSKLHRVT 70 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~-g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~-------~~~~~lT~~G~~l~~~a 70 (299)
+++-.+.+.+..+.+. | +.+.=|+.+++++|+||+.|++||+ .-|+.|. ++...+|..|..+.+..
T Consensus 18 gLs~~~~~iL~~L~~~~~~~t~~eia~~~~~~~~tvs~~l~~L~~---~GlV~r~~~~~d~rgr~~~l~~~~~~~~~~i 93 (109)
T 2d1h_A 18 KITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIE---LGLVVRTKTEGKKIGRPKYYYSISSNILEKI 93 (109)
T ss_dssp TCCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHH---TTSEEEEEC-------CCEEEEECTTHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH---CCCEEEECCCCCCCCCCEEEEECCHHHHHHH
T ss_conf 959999999999997598989999999989788589999999998---8997985178899885068763689999999
No 96
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=95.74 E-value=0.032 Score=30.95 Aligned_cols=192 Identities=8% Similarity=0.004 Sum_probs=85.7
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCC-CCCCCCCCCCCCCCCCCCCCCC---------C
Q ss_conf 3332111000000000135667542000122222222---2222222-2222234565432111122345---------5
Q gi|254780282|r 95 LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMD-YADCAIRLRKPIQSSSLIQRKL---------V 161 (299)
Q Consensus 95 i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~-~~Di~i~~~~~~~~~~l~~~~l---------~ 161 (299)
|+|....++.. .+-+++.+|.+++ +++|++..... ...+..| ..|+.+.. .+.....+....+ .
T Consensus 2 l~v~~~~~~~~-~~~~l~~~Fek~t-Gi~V~~~~g~sg~l~~~i~~g~~~D~~~~~-~~~~~~~~~~~g~~~~~~~~~~~ 78 (231)
T 1atg_A 2 LKVVTATNFLG-TLEQLAGQFAKQT-GHAVVISSGSSGPVYAQIVNGAPYNVFFSA-DEKSPEKLDNQGFALPGSRFTYA 78 (231)
T ss_dssp EEEEEEGGGHH-HHHHHHHHHHHHH-CCCEEEEEECHHHHHHHHHTTCCCSEEECS-SSHHHHHHHHTTCBCTTCCEEEE
T ss_pred EEEEEECCHHH-HHHHHHHHHHHHH-CCEEEEEECCHHHHHHHHHCCCCCCEEEEC-CHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 79999516699-9999999999852-988999988889999999849998499966-66667889861442346426763
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCC-CC-CCCCCCCHHHHHHHHCCCC-CCCCCCEEEECCCCHHHHHHH
Q ss_conf 543321123443211122222211000112--356-64-3321100023566520223-432121145324200135678
Q gi|254780282|r 162 TIHMHAYAAPHYLKNCREPLSIQELDKHNL--ITF-GD-LIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCV 236 (299)
Q Consensus 162 ~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~--i~~-~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~v~ 236 (299)
....+.+.++. ...+.+.++|....+ +.. ++ ..+.......+........ ..........++.......+.
T Consensus 79 ~~~~~~~~~~~----~~~~~~~~~l~~~~~~~i~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 154 (231)
T 1atg_A 79 IGKLVLWSAKP----GLVDNQGKVLAGNGWRHIAISNPQIAPYGLAGTQVLTHLGLLDKLTAQERIVEANSVGQAHSQTA 154 (231)
T ss_dssp ECCEEEEESST----TTSCTTSGGGGSSSCSCEEEECTTTCHHHHHHHHHHHHTTCHHHHHHTTCEEEESSHHHHHHHHH
T ss_pred CCEEEEEECCC----CCCCCCHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHCEEECCCCHHHHHHHH
T ss_conf 02289862477----77888688827754787999689878206899999987282255554310621023147888887
Q ss_pred HHC-CEEEEEHHHHCC---C-CCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 738-423311777601---9-98466177666766008999348778888999999999999
Q gi|254780282|r 237 LGS-GIALLPDYIVKD---N-PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 237 ~g~-Gia~lp~~~~~~---~-~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
.|. .++++..+.+.. . .....+.+........+.+...++..+.+.++.|+|||++.
T Consensus 155 ~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~n~~~A~~FidfL~S~ 216 (231)
T 1atg_A 155 SGAADLGFVALAQIIQAAAKIPGSHWFPPANYYEPIVQQAVITKSTAEKANAEQFMSWMKGP 216 (231)
T ss_dssp TTSSSEEEEEGGGTCCTTSCCSSEEECCCGGGSCCCEEEEEEBTTCSCHHHHHHHHHHTTSH
T ss_pred CCCCCEEEEHHHHHHHHHHCCCCEEEECCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCH
T ss_conf 07753451057788987643686044158666705567799985999979999999997899
No 97
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.66 E-value=0.0088 Score=34.22 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHH-HCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCC--EEEEECC
Q ss_conf 8899999999998-2768999988289978999999999999588217976994--6850013
Q gi|254780282|r 4 DWDKLRVFYVVAR-SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG--LTLTEQG 63 (299)
Q Consensus 4 d~~~L~~f~~v~~-~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~--~~lT~~G 63 (299)
|-..++++..+.+ ..+++.-|+.+++|||+||++++.|++ -|.--..|.|+. +.+++.+
T Consensus 57 dPtRl~IL~~L~~g~~tv~eLa~~l~is~stvS~HL~~L~~-aGLV~~~r~Gr~~~Y~L~~~~ 118 (151)
T 3f6v_A 57 EPTRRRLVQLLTSGEQTVNNLAAHFPASRSAISQHLRVLTE-AGLVTPRKDGRFRYYRLDPQG 118 (151)
T ss_dssp SHHHHHHHHHGGGCCEEHHHHHTTSSSCHHHHHHHHHHHHH-TTSEEEEEETTEEEEEECHHH
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH-CCCEEEEEECCEEEEEECHHH
T ss_conf 99999999999809938999999989199999999998998-897588987798999988799
No 98
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=95.65 E-value=0.047 Score=30.00 Aligned_cols=66 Identities=26% Similarity=0.366 Sum_probs=48.5
Q ss_pred CCCCHHHHHHHHHHHHHC---CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCC
Q ss_conf 988889999999999827---68999988289978999999999999588217976994685001343322
Q gi|254780282|r 1 MSFDWDKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 (299)
Q Consensus 1 m~md~~~L~~f~~v~~~g---s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~ 68 (299)
|.=+-..++.+-.+++ | |=..=|++|+||..||.++|++|++ .|.+.....++|++|...-..+..
T Consensus 1 m~~~~~~~~ll~~L~~-g~~~SGe~la~~L~iSR~aVwk~i~~L~~-~G~~I~s~~~~GY~l~~~~~~l~~ 69 (321)
T 1bia_A 1 MKDNTVPLKLIALLAN-GEFHSGEQLGETLGMSRAAINKHIQTLRD-WGVDVFTVPGKGYSLPEPIQLLNA 69 (321)
T ss_dssp CCCCHHHHHHHHHHTT-SSCBCHHHHHHHHTSCHHHHHHHHHHHHH-TTCCCEEETTTEEECSSCCCCCCH
T ss_pred CCCCCHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH-CCCCEEEECCCCEEECCCCCCCCH
T ss_conf 9975449999999726-99597999999879799999999999997-797299978967598985353799
No 99
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=95.59 E-value=0.0068 Score=34.87 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=12.7
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf 9946850013433222222222210122
Q gi|254780282|r 54 ARGLTLTEQGSKLHRVTSEVYHKLETTQ 81 (299)
Q Consensus 54 ~~~~~lT~~G~~l~~~a~~~l~~~~~~~ 81 (299)
.+++.+++.++.+.-.-..+-..+..+.
T Consensus 48 ~~~~~~~~la~~l~~~ks~vs~~l~~L~ 75 (250)
T 1p4x_A 48 ENTLPFKKIVSDLCYKQSDLVQHIKVLV 75 (250)
T ss_dssp CSEEEHHHHHHHSSSCGGGTHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9997899999996888106999999999
No 100
>2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=95.54 E-value=0.026 Score=31.49 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHH-HCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCC--EEEEECC
Q ss_conf 8899999999998-2768999988289978999999999999588217976994--6850013
Q gi|254780282|r 4 DWDKLRVFYVVAR-SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG--LTLTEQG 63 (299)
Q Consensus 4 d~~~L~~f~~v~~-~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~--~~lT~~G 63 (299)
|-..++.+..+++ ..+++.=|+.+++|||+||+|++.|++ -|.--..|.|+. +.+++.+
T Consensus 20 dp~Rl~Il~~L~~~~~~v~eLa~~l~is~s~vS~HL~~L~~-aGLV~~~r~Gr~~~Y~l~~~~ 81 (114)
T 2oqg_A 20 DETRWEILTELGRADQSASSLATRLPVSRQAIAKHLNALQA-CGLVESVKVGREIRYRALGAE 81 (114)
T ss_dssp CHHHHHHHHHHHHSCBCHHHHHHHSSSCHHHHHHHHHHHHH-TTSEEEEEETTEEEEEECSHH
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH-CCCCCEEEECCEEEEEECHHH
T ss_conf 99999999999819928999998888898899999999998-898803644898899978599
No 101
>2o1m_A Probable amino-acid ABC transporter extracellular-binding protein YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics, PSI-2; 2.00A {Bacillus subtilis}
Probab=95.45 E-value=0.024 Score=31.68 Aligned_cols=192 Identities=11% Similarity=0.058 Sum_probs=91.5
Q ss_pred CCCCCCCCCCCCCCCCCC-----------CCCCHHHHHHHHHHCCCCCCCCC---CCCCCCCCCCCCCCCC-CCC-CCCC
Q ss_conf 222222333211100000-----------00001356675420001222222---2222222222222234-565-4321
Q gi|254780282|r 89 VKPSGKLRIATTIDLGQN-----------LLQGNLKEFLLLYPDIQIQLILD---NKDIDISMDYADCAIR-LRK-PIQS 152 (299)
Q Consensus 89 ~~~~g~i~I~~~~~~~~~-----------~l~~~l~~f~~~~P~i~i~i~~~---~~~~~l~~~~~Di~i~-~~~-~~~~ 152 (299)
....++|+||+.+.+.+. +..+++..+.++.+++++++... .....+..|++|+++. +.. +...
T Consensus 12 ~~~~~~i~V~~~~~~pP~~~~~~~g~~~G~~vDl~~~ia~~l~g~~v~~~~~~~~~~~~~l~~g~~D~i~~~~~~~~er~ 91 (258)
T 2o1m_A 12 QKKVQTITVGTGTQFPNICFIDEKGDLTGYDVELIKELDKRLPHYKFTFKTMEFSNLLVSLGQHKVDIVAHQMEKSKERE 91 (258)
T ss_dssp --CCEEEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHTTSSSEEEEEECCCHHHH
T ss_pred CCCCCEEEEEECCCCCCEEEECCCCCEEEHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCHHHH
T ss_conf 56699899998999798069999996887599999999987289858999789999999997799888963476787887
Q ss_pred CCCC-CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCH
Q ss_conf 1112-23455-543321123443211122222211000112356643321100023566520223432121145324200
Q gi|254780282|r 153 SSLI-QRKLV-TIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230 (299)
Q Consensus 153 ~~l~-~~~l~-~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 230 (299)
..+. ..+.+ .....++..++. ....+++||.+...... .+... ...+.........+.....+.++...
T Consensus 92 ~~~~fs~~~~~~~~~~~~~~~~~----~~i~~~~dL~gk~igv~-~g~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~ 162 (258)
T 2o1m_A 92 KKFLFNKVAYNHFPLKITVLQNN----DTIRGIEDLKGKRVITS-ATSNG----ALVLKKWNEDNGRPFEIAYEGQGANE 162 (258)
T ss_dssp HHCEECSSCCEEEEEEEEEETTC----CSCSSGGGCTTCEEEEC-SSSHH----HHHHHHHHHHTTCCSEEEECCSSTTH
T ss_pred HHCCCCCCCCCCCCEEEEEEECC----CCCCCHHHCCCCEEEEC-CCCHH----HHHHHHHHHHCCCCCCCEECCCCHHH
T ss_conf 53136754223554289985136----76551544579889870-78749----99999999971887420103688999
Q ss_pred HHHHHHHHCCEEEEEHH-----HHCCCC-CEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 13567873842331177-----760199-84661776667660089993487788889999999999998
Q gi|254780282|r 231 IMQYCVLGSGIALLPDY-----IVKDNP-NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 (299)
Q Consensus 231 ~~~~v~~g~Gia~lp~~-----~~~~~~-~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~ 294 (299)
++.++..|.--+++... ..+..+ ....+.+ +....+++++.+++ ++.....++..+.++
T Consensus 163 ~~~~L~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~---~~~L~~~ln~~l~~~ 227 (258)
T 2o1m_A 163 TANQLKSGRADATISTPFAVDFQNKTSTIKEKTVGN--VLSNAKVYFMFNKN---EQTLSDDIDKALQEI 227 (258)
T ss_dssp HHHHHHHTSCSBEEECHHHHHHHHHHCSSCEEEEEE--EEEEEEEEEEECTT---CHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEECC--CCCCCCEEEEEECC---CHHHHHHHHHHHHHH
T ss_conf 999986595469991699999998527886588156--67775189999599---999999999999999
No 102
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV}
Probab=95.38 E-value=0.01 Score=33.86 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHH-HCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCE
Q ss_conf 8899999999998-27689999882899789999999999995882179769946
Q gi|254780282|r 4 DWDKLRVFYVVAR-SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 (299)
Q Consensus 4 d~~~L~~f~~v~~-~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~ 57 (299)
|-..++.+..+.+ ..+++.=++.+++|||+||+|++.|++. |.--..|.|+.+
T Consensus 20 dptRl~Il~~L~~~~~~v~ela~~lgis~stvS~HL~~L~~a-glV~~~r~G~~~ 73 (118)
T 2jsc_A 20 DPTRCRILVALLDGVCYPGQLAAHLGLTRSNVSNHLSCLRGC-GLVVATYEGRQV 73 (118)
T ss_dssp SHHHHHHHHHHHTTCCSTTTHHHHHSSCHHHHHHHHHHHTTT-TSEEEEECSSSE
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEEEECCEE
T ss_conf 999999999998199289999999892999999999999988-962799887989
No 103
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=95.32 E-value=0.017 Score=32.57 Aligned_cols=194 Identities=8% Similarity=-0.052 Sum_probs=85.3
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC---C-------CCCCCCCCC
Q ss_conf 3332111000000000135667542000122222222--222222222222345654321---1-------112234555
Q gi|254780282|r 95 LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK--DIDISMDYADCAIRLRKPIQS---S-------SLIQRKLVT 162 (299)
Q Consensus 95 i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~--~~~l~~~~~Di~i~~~~~~~~---~-------~l~~~~l~~ 162 (299)
|+|....+... .+-++...|.+ .++++|++..... .......+.|+.+........ . .-....++.
T Consensus 3 i~v~~~~~~~~-~~~~l~~~Fek-~tGi~V~~~~~~s~~l~~~i~~~aDv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (237)
T 2hxw_A 3 VNLYGPGGPHT-ALKDIANKYSE-KTGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYF 80 (237)
T ss_dssp EEEEECSSTHH-HHHHHHHHHHH-HHCCCEEEEESSHHHHHHHHHHHCSEEEESSHHHHHHHHTTSGGGCCGGGCEEEEE
T ss_pred EEEEECCCCHH-HHHHHHHHHHH-HHCCEEEEEECCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 99994789789-99999999988-01975999977829999997659999998460478999886104677772799994
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--C-CCCCCCCCHHHHHHHHCCCCCC------CCCCEEEECCCCHHHH
Q ss_conf 43321123443211122222211000112356--6-4332110002356652022343------2121145324200135
Q gi|254780282|r 163 IHMHAYAAPHYLKNCREPLSIQELDKHNLITF--G-DLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQ 233 (299)
Q Consensus 163 ~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~--~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~ 233 (299)
..++++..++.+. .+.+++||.+..+-.. . ...+.......+.......... ........++...+..
T Consensus 81 ~~~vl~~~~~~~~---~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (237)
T 2hxw_A 81 REAIILTQKGNPL---KIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNFRNNIVAFVPNSGSARK 157 (237)
T ss_dssp EEEEEEESTTCTT---CCCSHHHHHHSCCCEEECCCTTSSCCTTTTHHHHHHHTTCCHHHHHHHHHTEEEECCCCTTC--
T ss_pred EEEEEEEECCCCC---CCCCHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCEEECCCHHHHHH
T ss_conf 3299999799976---7652356642031066513688732227999999862222088999743570586588899999
Q ss_pred HHHHHC-CEEEEEHHHHCCCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 678738-423311777601998466177666766008999348778888999999999999
Q gi|254780282|r 234 YCVLGS-GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 234 ~v~~g~-Gia~lp~~~~~~~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
++..|. .+++.....+...+....+.+..........+.-.++...++.++.|++||.+.
T Consensus 158 ~v~~g~~d~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~A~~Fi~fl~S~ 218 (237)
T 2hxw_A 158 LFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVIAKEGASKETQDFIAYLSSK 218 (237)
T ss_dssp CTTTTTCSEEEEEHHHHHHSTTSSEEEECCTTTCCEEEEEEEECTTCCHHHHHHHHHTTSH
T ss_pred HHHHCCCEEEEEEHHHHHCCCCCEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCH
T ss_conf 9970777099874454532666028996699852587799995899949999999997899
No 104
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=95.18 E-value=0.011 Score=33.72 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999999982768999988289978999999999
Q gi|254780282|r 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGL 41 (299)
Q Consensus 7 ~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~L 41 (299)
.=-.-.++.++||.++||+.|+|+++++.+.|+++
T Consensus 23 k~~I~~aL~~~g~~~~aA~~Lgisr~tL~rKlkky 57 (61)
T 1g2h_A 23 AQVLKLFYAEYPSTRKLAQRLGVSHTAIANKLKQY 57 (61)
T ss_dssp HHHHHHHHHHSCSHHHHHHHTTSCTHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999996899999999797899999999996
No 105
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=95.18 E-value=0.019 Score=32.30 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=35.5
Q ss_pred HHHHHHHHHHH-HCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf 99999999998-2768999988289978999999999999588217976994
Q gi|254780282|r 6 DKLRVFYVVAR-SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56 (299)
Q Consensus 6 ~~L~~f~~v~~-~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~ 56 (299)
..++.+..+.+ ..+++.=|+.+++|||+||+|++.|++ -|.--..|.|+.
T Consensus 24 ~Rl~Il~~L~~~~~~v~ela~~l~~s~~tvS~HL~~L~~-aglV~~~r~G~~ 74 (98)
T 3jth_A 24 RRLQILCMLHNQELSVGELCAKLQLSQSALSQHLAWLRR-DGLVTTRKEAQT 74 (98)
T ss_dssp HHHHHHHHTTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH-TTSEEEECCTTC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH-CCCEEEEEECCE
T ss_conf 999999999729937999999988595678899999998-894269987689
No 106
>1amf_A Molybdate transport protein MODA; periplasmic, binding protein; 1.75A {Escherichia coli} SCOP: c.94.1.1 PDB: 1wod_A
Probab=94.88 E-value=0.035 Score=30.75 Aligned_cols=198 Identities=10% Similarity=0.036 Sum_probs=80.8
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC------
Q ss_conf 2223332111000000000135667542000122222222---22222222-2222345654321111223455------
Q gi|254780282|r 92 SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDY-ADCAIRLRKPIQSSSLIQRKLV------ 161 (299)
Q Consensus 92 ~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~-~Di~i~~~~~~~~~~l~~~~l~------ 161 (299)
.|+|+|.+..++ ...+.+++..|.+ +++++|++..... ...+..|. .|+.+....+..........+.
T Consensus 2 ~g~l~v~~a~s~-~~~~~~l~~~Fek-~~gi~V~~~~g~s~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (233)
T 1amf_A 2 EGKITVFAAASL-TNAMQDIATQFKK-EKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQT 79 (233)
T ss_dssp -CEEEEEEEGGG-HHHHHHHHHHHHH-HHCCEEEEEEECHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEE
T ss_pred CCEEEEEEECCH-HHHHHHHHHHHHH-HHCCEEEEEECCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCCEEE
T ss_conf 977999996263-9999999999988-11977999977759999999739998689966455567777525656664245
Q ss_pred --CCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHH
Q ss_conf --5433211234432111222---22211000112356--6433211000235665202234321211453242001356
Q gi|254780282|r 162 --TIHMHAYAAPHYLKNCREP---LSIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 (299)
Q Consensus 162 --~~~~~~v~~~~~~~~~~~~---~~~~dL~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 234 (299)
......+...........+ .++.++..-..+.. ....+.......++...+........ .....+.......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 158 (233)
T 1amf_A 80 LLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPK-LAPAEDVRGALAL 158 (233)
T ss_dssp EEEECEEEEEETTCCCCCCCCSTTCCHHHHHTTCCEEEECTTTCHHHHHHHHHHHHTTCHHHHGGG-EEEESSHHHHHHH
T ss_pred ECCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHCCC-CCCCCCHHHHHHH
T ss_conf 204412553034211454455425569862469938998998751899999999972751232301-0225550477888
Q ss_pred HHHHCC-EEEEEHHHHC-CCC-CEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 787384-2331177760-199-8466177666766008999348778888999999999999
Q gi|254780282|r 235 CVLGSG-IALLPDYIVK-DNP-NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 235 v~~g~G-ia~lp~~~~~-~~~-~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
+..|.+ +++.....+. ..+ ...-+.|........+.+...++.+ ++.+++|+|||++.
T Consensus 159 ~~~g~~~~~~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~~i~k~~~-~~~A~~FidfllS~ 219 (233)
T 1amf_A 159 VERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHN-NATVKAFYDYLKGP 219 (233)
T ss_dssp HHTTSSSEEEEEHHHHHHCSSEEEEEECCGGGSCCEEEEEEEBTTCC-SHHHHHHHHHHTSH
T ss_pred HHHCCCCEEEHHHHHHHHHCCCCCEEEECCCCCEEEEEEEEEECCCC-CHHHHHHHHHHCCH
T ss_conf 76246628744678898730457539857988637678899987999-99999999997899
No 107
>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=94.80 E-value=0.079 Score=28.68 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHH--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 888999999999982--768999988289978999999999999
Q gi|254780282|r 3 FDWDKLRVFYVVARS--GSFTHAAEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 3 md~~~L~~f~~v~~~--gs~s~AA~~L~itq~avS~~i~~LE~~ 44 (299)
||=-+.+.+..+.+- -|++.-|+++|+|+++|+++|++||+.
T Consensus 5 lD~~D~~IL~~L~~d~R~s~~~iA~~lglS~~tv~~Ri~rL~~~ 48 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 72899999999998489999999999891999999999999845
No 108
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=94.78 E-value=0.073 Score=28.90 Aligned_cols=42 Identities=12% Similarity=0.206 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHH--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 888999999999982--768999988289978999999999999
Q gi|254780282|r 3 FDWDKLRVFYVVARS--GSFTHAAEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 3 md~~~L~~f~~v~~~--gs~s~AA~~L~itq~avS~~i~~LE~~ 44 (299)
||=-+.+.+..+.+- -|++.-|+.+|+|+++|.++|++|++.
T Consensus 6 lD~~D~~Il~~L~~d~R~s~~~ia~~lg~s~~tv~~Ri~rL~~~ 49 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 68999999999998489999999999891999999999999736
No 109
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=94.77 E-value=0.059 Score=29.41 Aligned_cols=42 Identities=19% Similarity=0.418 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHH--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 888999999999982--768999988289978999999999999
Q gi|254780282|r 3 FDWDKLRVFYVVARS--GSFTHAAEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 3 md~~~L~~f~~v~~~--gs~s~AA~~L~itq~avS~~i~~LE~~ 44 (299)
||=.+.+.+..+.+- -|++.-|+++|+|+++|.++|++||+.
T Consensus 2 lD~~D~~Il~~L~~d~r~s~~~ia~~~gls~~tv~~Ri~rL~~~ 45 (141)
T 1i1g_A 2 IDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEK 45 (141)
T ss_dssp CCSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 87799999999998489899999999892999999999997339
No 110
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=94.76 E-value=0.032 Score=30.98 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=35.8
Q ss_pred HHHHHHHHHHH-HCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf 99999999998-2768999988289978999999999999588217976994
Q gi|254780282|r 6 DKLRVFYVVAR-SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56 (299)
Q Consensus 6 ~~L~~f~~v~~-~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~ 56 (299)
..++.+..+++ ..+++.=|+.+++|||+||+|++.|++. |.---.|.|+.
T Consensus 19 ~R~~Il~~L~~~~~~v~ela~~l~~s~~tvS~HL~~L~~a-GlV~~~r~Gr~ 69 (118)
T 3f6o_A 19 TRRAVLGRLSRGPATVSELAKPFDMALPSFMKHIHFLEDS-GWIRTHKQGRV 69 (118)
T ss_dssp HHHHHHHHHHTCCEEHHHHHTTCCSCHHHHHHHHHHHHHT-TSEEEEEETTE
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCCEEEEECCE
T ss_conf 9999999998099479999999891999999999999988-98626765888
No 111
>3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=94.50 E-value=0.11 Score=27.93 Aligned_cols=46 Identities=11% Similarity=0.257 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCE
Q ss_conf 8889999999999827689999882899789999999999995882
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIK 48 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~ 48 (299)
++-++++++..+++-.|...-|+.|+||..+|..+++++-+.||+.
T Consensus 28 LT~rE~evl~ll~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~ 73 (95)
T 3c57_A 28 LTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 4999999999999079999998794978999999999999997899
No 112
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=94.34 E-value=0.14 Score=27.32 Aligned_cols=187 Identities=10% Similarity=0.036 Sum_probs=89.4
Q ss_pred CCCCCCCCCCCCCCC--------------CCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCC-CCCCCC-C
Q ss_conf 222333211100000--------------000013566754200012222222---222222222222234-565432-1
Q gi|254780282|r 92 SGKLRIATTIDLGQN--------------LLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIR-LRKPIQ-S 152 (299)
Q Consensus 92 ~g~i~I~~~~~~~~~--------------~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~-~~~~~~-~ 152 (299)
+|.|+||+.+.+.++ +..+++..+.+.- ++++++...+ ....|..|++|+++. +..... .
T Consensus 20 ~~~l~V~~~~~~~P~~~~~~~~~~g~~~G~~vDl~~~ia~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~ 98 (271)
T 2iee_A 20 KGKIVVATSGTLYPTSYHDTDSGSDKLTGYEVEVVREAAKRL-GLKVEFKEMGIDGMLTAVNSGQVDAAANDIDVTKDRE 98 (271)
T ss_dssp HTEEEEEECSCBTTTBEEETTTTCCEEECHHHHHHHHHHHHT-TCEEEEEECCSTTHHHHHHHTSSSEECSSCBCCHHHH
T ss_pred CCEEEEEECCCCCCCEEECCCCCCCCEEEEHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHCCCCCEEECCCCCCHHHH
T ss_conf 997999988998896788368999967887999999999983-9964899899999999997699774402454687887
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHH
Q ss_conf 111-2234555433211234432111222222110001123566433211000235665202234321211453242001
Q gi|254780282|r 153 SSL-IQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231 (299)
Q Consensus 153 ~~l-~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 231 (299)
..+ ...+++....++++.++- .....+++||.+....... .. ....++.... +......+++...+
T Consensus 99 ~~~~~s~p~~~~~~~~~~~~~~---~~~~~~~~dl~g~~v~v~~-g~----~~~~~l~~~~-----~~~~i~~~~s~~~~ 165 (271)
T 2iee_A 99 EKFAFSTPYKYSYGTAIVRKDD---LSGIKTLKDLKGKKAAGAA-TT----VYMEVARKYG-----AKEVIYDNATNEQY 165 (271)
T ss_dssp TTEEECCCSEEEEEEEEECTTT---GGGCSSGGGGTTCEEESCT-TS----HHHHHHHHTT-----CEEEECSSCCHHHH
T ss_pred HHHHCCCCCCCCCCCEEEECCC---CCCCCCHHHHCCCEEEECC-CC----HHHHHHHHCC-----CCCEEEEECCHHHH
T ss_conf 6542056622157623675047---7777987880794589716-85----8999999708-----98589982360889
Q ss_pred HHHHHHHCCEEEE-EHHH----HCCCCCE-EEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 3567873842331-1777----6019984-6617766676600899934877888899999999999985
Q gi|254780282|r 232 MQYCVLGSGIALL-PDYI----VKDNPNL-VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 (299)
Q Consensus 232 ~~~v~~g~Gia~l-p~~~----~~~~~~l-v~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r 295 (299)
+.++..|..=+++ .... +...+.+ ..+.+.....+..++++.+++ ++.....++-.+++++
T Consensus 166 l~~L~~grvD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~---~~~L~~~ln~~l~~i~ 232 (271)
T 2iee_A 166 LKDVANGRTDVILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALVMKKS---NAALQKKMNEALKEMS 232 (271)
T ss_dssp HHHHHHTSSCEEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECCEEETT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEEECHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEEEECC---CHHHHHHHHHHHHHHH
T ss_conf 999976953499924999999998689974686667665661289999489---9999999999999999
No 113
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=94.33 E-value=0.15 Score=27.04 Aligned_cols=189 Identities=9% Similarity=0.050 Sum_probs=90.3
Q ss_pred CCCCCCCCCCCCCCCC-C----------CCCHHHHHHH------HHHCCCCCCCCC---CCCCCCCCCCCCCCCCCCC--
Q ss_conf 2222333211100000-0----------0001356675------420001222222---2222222222222234565--
Q gi|254780282|r 91 PSGKLRIATTIDLGQN-L----------LQGNLKEFLL------LYPDIQIQLILD---NKDIDISMDYADCAIRLRK-- 148 (299)
Q Consensus 91 ~~g~i~I~~~~~~~~~-~----------l~~~l~~f~~------~~P~i~i~i~~~---~~~~~l~~~~~Di~i~~~~-- 148 (299)
.+|.|+||+...+..+ + -.+++..+.+ ..+++++++... .....|..|++|+++....
T Consensus 15 ~~g~l~Vg~~~~~~P~~~~d~~G~~~G~~vDl~~~ia~~l~~~l~~~~~~v~~~~~~~~~~~~~L~~G~~Di~~~~~~~t 94 (287)
T 2vha_A 15 KNGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNN 94 (287)
T ss_dssp HHTEEEEEECSEETTTEEECSSSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEECCTTTHHHHHHTTSCSEECSSCBCC
T ss_pred HCCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCEEECCCCCC
T ss_conf 09989999868988936899999888866999999999974773778706999987999999999869964341134466
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECC
Q ss_conf 4321111-223455543321123443211122222211000112356643321100023566520223432121145324
Q gi|254780282|r 149 PIQSSSL-IQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS 227 (299)
Q Consensus 149 ~~~~~~l-~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 227 (299)
+.....+ ...++.....++++.++ ....+++||.+....... +.... .++....... ........+++
T Consensus 95 ~~R~~~~~fs~p~~~~~~~l~~~k~-----~~i~~~~dL~g~~v~v~~-gs~~~----~~l~~~~~~~-~~~~~iv~~~~ 163 (287)
T 2vha_A 95 VERQKQAAFSDTIFVVGTRLLTKKG-----GDIKDFADLKGKAVVVTS-GTTSE----VLLNKLNEEQ-KMNMRIISAKD 163 (287)
T ss_dssp HHHHTTCEEEEEEEEEEEEEEEETT-----SSCCSGGGGTTCEEEEET-TSHHH----HHHHHHHHHT-TCCCEEEEESS
T ss_pred HHHHHHCCCCCCCCCCCCEEEEECC-----CCCCCHHHCCCCCEEECC-CCHHH----HHHHHHHHHH-CCCCCEEECCH
T ss_conf 4565432455430004725777548-----987898780898122137-86699----9999988873-78963465221
Q ss_pred CCHHHHHHHHHCCEEEE-EHHHH----CC--CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 20013567873842331-17776----01--9984661776667660089993487788889999999999998
Q gi|254780282|r 228 YLSIMQYCVLGSGIALL-PDYIV----KD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 (299)
Q Consensus 228 ~~~~~~~v~~g~Gia~l-p~~~~----~~--~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~ 294 (299)
...++.++..|..-+++ ..... .. ......+.+. +....+++++.+++ ++.....++..+.++
T Consensus 164 ~~~~~~~l~~grvD~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~av~k~---~~~L~~~in~~l~~l 233 (287)
T 2vha_A 164 HGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGK-PQSQEAYGCMLRKD---DPQFKKLMDDTIAQV 233 (287)
T ss_dssp HHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESC-CSCEEEEEEEECTT---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCCEEEECC-CCCCCEEEEEEECC---CHHHHHHHHHHHHHH
T ss_conf 78999999869940999614999999996578886799378-77763189999489---999999999999999
No 114
>1xt8_A Putative amino-acid transporter periplasmic solute-binding protein; ABC transport, cysteine uptake, spine, structural genomics; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=94.10 E-value=0.13 Score=27.52 Aligned_cols=185 Identities=14% Similarity=0.132 Sum_probs=88.9
Q ss_pred CCCCCCCCCCCCCCCC-----------CCCCHHHHHHHH--HHCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCC--CC
Q ss_conf 2222333211100000-----------000013566754--20001222222---222222222222223456543--21
Q gi|254780282|r 91 PSGKLRIATTIDLGQN-----------LLQGNLKEFLLL--YPDIQIQLILD---NKDIDISMDYADCAIRLRKPI--QS 152 (299)
Q Consensus 91 ~~g~i~I~~~~~~~~~-----------~l~~~l~~f~~~--~P~i~i~i~~~---~~~~~l~~~~~Di~i~~~~~~--~~ 152 (299)
.+|.|+||+.+...+. +-.+++..+.++ ..++.+++... +....+..+++|+.+...... ..
T Consensus 42 ~~g~l~Vgv~~~~pP~~~~d~~G~~~G~~~Dl~~~ia~~Lg~~~~~v~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~R~ 121 (292)
T 1xt8_A 42 QNGVVRIGVFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQRA 121 (292)
T ss_dssp HHSSEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHHHHSCTTCEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHH
T ss_pred CCCEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf 09989999858989906999999887306899999999855897179999634786899998699771135565671121
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHH
Q ss_conf 111-2234555433211234432111222222110001123566433211000235665202234321211453242001
Q gi|254780282|r 153 SSL-IQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231 (299)
Q Consensus 153 ~~l-~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 231 (299)
..+ ...+++.....+++.++ ....+++||.+.... ...+.. ...++.... +.....++++.+.+
T Consensus 122 ~~~~fs~py~~~~~~~~~~~~-----~~i~~~~dL~g~~V~-v~~g~~----~~~~l~~~~-----~~~~~v~~~~~~~~ 186 (292)
T 1xt8_A 122 EQVDFCSPYMKVALGVAVPKD-----SNITSVEDLKDKTLL-LNKGTT----ADAYFTQNY-----PNIKTLKYDQNTET 186 (292)
T ss_dssp TTEEECCCCEEEEEEEEEETT-----CCCCSSGGGTTSEEE-EETTSH----HHHHHHHHC-----TTSEEEEESSHHHH
T ss_pred CCCCCCCCEEECCCEEEEECC-----CCCCCHHHHHHCEEE-EECCCH----HHHHHHHHH-----HHHHHEEECCCCCH
T ss_conf 024667534741513787224-----576747777006677-515858----999999710-----00000000022201
Q ss_pred HHHHHHHCCEEEE-EHHH----HCCCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 3567873842331-1777----6019984661776667660089993487788889999999999998
Q gi|254780282|r 232 MQYCVLGSGIALL-PDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 (299)
Q Consensus 232 ~~~v~~g~Gia~l-p~~~----~~~~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~ 294 (299)
++++.+|..=+++ .... +++.+....... .......+++..+++ ++.....++--+++.
T Consensus 187 ~~~l~~G~vDa~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iav~k~---~~~L~~~ln~~l~~l 250 (292)
T 1xt8_A 187 FAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIK-ELGNKDVIAPAVKKG---DKELKEFIDNLIIKL 250 (292)
T ss_dssp HHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEEE-EEEEEEEECCEEETT---CHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEEECHHHHHHHHHHCCCCEEECC-CCCCCCEEEEEEECC---CHHHHHHHHHHHHHH
T ss_conf 1244369369999569999999997899789414-678773399999799---999999999999999
No 115
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=93.93 E-value=0.086 Score=28.49 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=35.1
Q ss_pred CCCCCCCCCCCCCCC-CCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCC
Q ss_conf 222333211100000-0000135667542000122222222---2222222222223
Q gi|254780282|r 92 SGKLRIATTIDLGQN-LLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAI 144 (299)
Q Consensus 92 ~g~i~I~~~~~~~~~-~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i 144 (299)
+++|+|.++.++... ++-+++..|.+++ +++|++..... ...+..+..|+.+
T Consensus 4 ~~~l~i~~~~S~~~~gl~~~l~~~Fek~t-gi~V~~~~g~sg~l~~~i~~~~~~~~~ 59 (236)
T 3lr1_A 4 EERLKMSTTTSTQDSGLLKVLLPPFEKKN-NVKVDVIAVGTGQALKLGEAGDVDVVF 59 (236)
T ss_dssp SCEEEEEEEHHHHHHCHHHHHHHHHHHHH-TCEEEEEEECHHHHHHHHHTTSCSEEE
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH-CCEEEEEECCHHHHHHHHHCCCCCEEE
T ss_conf 87699999768630113999999999984-987999988879999999769987066
No 116
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=93.92 E-value=0.088 Score=28.43 Aligned_cols=39 Identities=13% Similarity=0.218 Sum_probs=30.7
Q ss_pred HHHHHHHHHH-HCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999998-27689999882899789999999999995
Q gi|254780282|r 7 KLRVFYVVAR-SGSFTHAAEQLHLSQSSISRQISGLETEV 45 (299)
Q Consensus 7 ~L~~f~~v~~-~gs~s~AA~~L~itq~avS~~i~~LE~~l 45 (299)
.++.+..+.+ ..|++.-|+.|++||++||+||+.|++.=
T Consensus 22 R~~IL~~L~~~~~t~~ela~~l~~s~~~v~~HL~~L~~~G 61 (192)
T 1uly_A 22 RRKILKLLRNKEMTISQLSEILGKTPQTIYHHIEKLKEAG 61 (192)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 9999999982996799999998919889999999998889
No 117
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=93.91 E-value=0.084 Score=28.55 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHH--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 888999999999982--768999988289978999999999999
Q gi|254780282|r 3 FDWDKLRVFYVVARS--GSFTHAAEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 3 md~~~L~~f~~v~~~--gs~s~AA~~L~itq~avS~~i~~LE~~ 44 (299)
||=-+.+.+..+.+- -|++.=|+++|+|.++|.++|++||+.
T Consensus 1 lD~~D~~Il~~L~~d~R~s~~eia~~lg~s~~tv~~Ri~~L~~~ 44 (150)
T 2pn6_A 1 MDEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp CCHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 98899999999998489999999999893999999999999968
No 118
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, structural genomics, PSI-2; HET: GTT CIT; 2.41A {Wolinella succinogenes}
Probab=93.85 E-value=0.065 Score=29.18 Aligned_cols=53 Identities=15% Similarity=0.015 Sum_probs=35.9
Q ss_pred CCCCCCCCCCCCC-CCCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCC
Q ss_conf 2233321110000-0000013566754200012222222---2222222222222345
Q gi|254780282|r 93 GKLRIATTIDLGQ-NLLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIRL 146 (299)
Q Consensus 93 g~i~I~~~~~~~~-~~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~~ 146 (299)
..+||.++.++.. .++.+++.+|.+++ +++|++.... ....+.+|..|+.+..
T Consensus 5 ~~l~i~~~~S~~~~~l~~~l~~~Fe~~t-gikV~~~~~~Sg~l~~~~~~g~~~~~~~~ 61 (242)
T 3kn3_A 5 AELRMATTTSTDNTGLLDVLAPAYKKDT-GVDLKWVAVGTGNALKLGENCDVDVVFVH 61 (242)
T ss_dssp CEEEEEEEHHHHHHTHHHHHHHHHHHHH-SCEEEEEEECHHHHHHHHHTTCCSEEEEC
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHH-CCEEEEEECCCHHHHHHHHCCCCCEEEEC
T ss_conf 5689999727752314999999999986-97799997784999998864788554304
No 119
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP}
Probab=93.80 E-value=0.044 Score=30.19 Aligned_cols=54 Identities=17% Similarity=0.208 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHC---CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEC
Q ss_conf 9999999999827---68999988289978999999999999588217976994685001
Q gi|254780282|r 6 DKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 (299)
Q Consensus 6 ~~L~~f~~v~~~g---s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~ 62 (299)
+-|..+.++++.+ +++.-|+.++++.|++++-++.|++. | ++.|.++++.|++.
T Consensus 22 Ral~ILe~la~~~~~lsl~eia~~l~l~kst~~RlL~tL~~~-G--~l~~~~~~Y~lG~~ 78 (265)
T 2ia2_A 22 RGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVEL-G--YVATDGSAFWLTPR 78 (265)
T ss_dssp HHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHH-T--SEEESSSEEEECGG
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-C--CEEECCCCCCCCHH
T ss_conf 999999999737999799999999794999999999999987-9--95306973203478
No 120
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=93.69 E-value=0.038 Score=30.52 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=36.8
Q ss_pred HHHHHHH-HHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCE
Q ss_conf 9999999-9827689999882899789999999999995882179769946
Q gi|254780282|r 8 LRVFYVV-ARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 (299)
Q Consensus 8 L~~f~~v-~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~ 57 (299)
|+.+..+ ....+++.=|+.+++|||+||++++.|++ -|.--..|.|+..
T Consensus 28 l~Il~~L~~~~~~v~eLa~~l~is~s~vS~HL~~L~~-aglV~~~r~G~~~ 77 (108)
T 2kko_A 28 LQILDLLAQGERAVEAIATATGMNLTTASANLQALKS-GGLVEARREGTRQ 77 (108)
T ss_dssp HHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHHHHHH-HTSEEEEEETTEE
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH-CCEEEEEEECCEE
T ss_conf 9999999809957999999989098889999999998-8934799886889
No 121
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=93.50 E-value=0.14 Score=27.32 Aligned_cols=37 Identities=16% Similarity=0.327 Sum_probs=29.2
Q ss_pred HHHHHHHH-HHCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999-82768999988289978999999999999
Q gi|254780282|r 8 LRVFYVVA-RSGSFTHAAEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 8 L~~f~~v~-~~gs~s~AA~~L~itq~avS~~i~~LE~~ 44 (299)
++.+..++ ...+++.-|+.|++|+++||+|++.||+.
T Consensus 18 ~~Il~~L~~~~~~~~ela~~l~is~~~v~~HL~~L~~~ 55 (202)
T 2p4w_A 18 RRILFLLTKRPYFVSELSRELGVGQKAVLEHLRILEEA 55 (202)
T ss_dssp HHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99999997399989999999890998999999999978
No 122
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens}
Probab=93.47 E-value=0.33 Score=25.10 Aligned_cols=184 Identities=8% Similarity=0.009 Sum_probs=89.2
Q ss_pred CCCCCCCCCCCCCCC-----------CCCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 222233321110000-----------0000013566754200012222222---2222222222222345654-321111
Q gi|254780282|r 91 PSGKLRIATTIDLGQ-----------NLLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIRLRKP-IQSSSL 155 (299)
Q Consensus 91 ~~g~i~I~~~~~~~~-----------~~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~~~~~-~~~~~l 155 (299)
..++|+||....+.+ .+..+++..+.+.. ++++++...+ ....+..|++|+...+... .....+
T Consensus 9 ~~~~i~v~~~~~~pP~~~~~~~G~~~G~~~Dl~~~i~~~~-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~r~~~~ 87 (234)
T 3h7m_A 9 RHRTIVVGGDRDYPPYEFIDQNGKPAGYNVELTRAIAEVM-GMTVEFRLGAWSEMFSALKSGRVDVLQGISWSEKRARQI 87 (234)
T ss_dssp SSSCEEEEEETEETTTEEECTTSCEESHHHHHHHHHHHHH-TCCEEEEEECGGGHHHHHHTTSSSEEEEEECCHHHHTTE
T ss_pred CCCCEEEEECCCCCCEEEECCCCCEEEHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHCCCCCEEECCCCCHHHCCCC
T ss_conf 6991999989998990799999988876999999999994-996699517999999999779975542102444331434
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHH
Q ss_conf -2234555433211234432111222222110001123566433211000235665202234321211453242001356
Q gi|254780282|r 156 -IQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 (299)
Q Consensus 156 -~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 234 (299)
...++.....++++.++. ....+++||.+...... .+. ....++.... +......+++...++.+
T Consensus 88 ~fs~p~~~~~~~~~~~~~~----~~~~~~~dl~~~~i~v~-~g~----~~~~~l~~~~-----~~~~~~~~~~~~~~~~~ 153 (234)
T 3h7m_A 88 DFTPPHTIVYHAIFARRDS----PPAAGLEDLRGRKVALH-RDG----IMHEYLAERG-----YGKDLVLTPTPADALRL 153 (234)
T ss_dssp EEEEEEEEEEEEEEEESSS----CCCSSGGGGTTSCEEEE-TTS----HHHHHHHTTT-----CGGGEEEESSHHHHHHH
T ss_pred CCCCCCCCCCEEEEEEECC----CCCCCHHHHCCCEEEEE-CCC----HHHHHHHHHC-----CCCCEEEEEHHHHHHHH
T ss_conf 6577644245499998403----34478678469824343-798----7999999732-----57715884115768999
Q ss_pred HHHHCC-EEEEEHHHH----CCC--CCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 787384-233117776----019--984661776667660089993487788889999999999998
Q gi|254780282|r 235 CVLGSG-IALLPDYIV----KDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 (299)
Q Consensus 235 v~~g~G-ia~lp~~~~----~~~--~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~ 294 (299)
+..|.. +++.+...+ ++. ..+..+.. .....+++++.+++ ++.....++..+.++
T Consensus 154 l~~g~~D~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~---~~~l~~~ln~~l~~l 215 (234)
T 3h7m_A 154 LAAGGCDYAVVAMVPGMYIIRENRLTNLVPVAR--SIAAQRYGYAVRQG---DAELLARFSEGLAIL 215 (234)
T ss_dssp HHTTSSSEEEEEHHHHHHHHHHTTCTTEEEEEE--EEEEEEEEEEEETT---CHHHHHHHHHHHHHH
T ss_pred HHCCCCCEEEECHHHHHHHHHHCCCCCCCCCCC--CCCCCEEEEEEECC---CHHHHHHHHHHHHHH
T ss_conf 976995699941788999998668875410256--77775289999589---999999999999999
No 123
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, PSI-2, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium}
Probab=93.39 E-value=0.04 Score=30.43 Aligned_cols=64 Identities=20% Similarity=0.329 Sum_probs=44.2
Q ss_pred HHHHHHHHHC---CHHHHHHHH-CCCHHHHHHHHHHHHHHHCCEEEEECC---CCEEEEECCCCCCCCCCCCCC
Q ss_conf 9999999827---689999882-899789999999999995882179769---946850013433222222222
Q gi|254780282|r 9 RVFYVVARSG---SFTHAAEQL-HLSQSSISRQISGLETEVGIKLFYRHA---RGLTLTEQGSKLHRVTSEVYH 75 (299)
Q Consensus 9 ~~f~~v~~~g---s~s~AA~~L-~itq~avS~~i~~LE~~lg~~Lf~R~~---~~~~lT~~G~~l~~~a~~~l~ 75 (299)
..+..+.... +|+.=.+.+ +||+.++|+++++||+. .|+.|.. ..+.||+.|+.|.+....+..
T Consensus 31 ~Il~~L~~g~~r~~F~el~~~l~~Is~~~Ls~rLk~L~~~---Glv~r~~~~~veY~LT~~G~~L~~il~~l~~ 101 (111)
T 3df8_A 31 LIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDS---GLVERRSGQITTYALTEKGMNVRNSLMPLLQ 101 (111)
T ss_dssp HHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHT---TSEEEEESSSEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHC---CEEEECCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 9999998089857799999872023588899999999979---9377269997588779688899999999999
No 124
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=93.38 E-value=0.11 Score=27.77 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHH--HCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88899999999998--2768999988289978999999999999
Q gi|254780282|r 3 FDWDKLRVFYVVAR--SGSFTHAAEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 3 md~~~L~~f~~v~~--~gs~s~AA~~L~itq~avS~~i~~LE~~ 44 (299)
||=-+.+.+..+.+ -.|++.=|+++|+|+++|.++|++||+.
T Consensus 1 LD~~D~~IL~~L~~d~R~s~~eiA~~lglS~~tv~~Ri~rL~~~ 44 (162)
T 3i4p_A 1 MDRLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEED 44 (162)
T ss_dssp CCHHHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 98799999999998489999999999892999999999999847
No 125
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50
Probab=93.33 E-value=0.17 Score=26.82 Aligned_cols=43 Identities=21% Similarity=0.358 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88889999999999827--68999988289978999999999999
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~ 44 (299)
+++-.+.+++..+.+.| +.+.=|+.+++++|+|++.|++||+.
T Consensus 17 glt~~e~~v~~~L~~~~~~t~~eia~~~~~~~~~v~~~l~~L~~~ 61 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp CCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 999999999999980488879999999756701899999999959
No 126
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=93.32 E-value=0.066 Score=29.15 Aligned_cols=68 Identities=15% Similarity=0.291 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHH-CCCHHHHHHHHHHHHHHHCCEEEEECCC-------CEEEEECCCCCCCCCCCCCC
Q ss_conf 89999999999827689999882-8997899999999999958821797699-------46850013433222222222
Q gi|254780282|r 5 WDKLRVFYVVARSGSFTHAAEQL-HLSQSSISRQISGLETEVGIKLFYRHAR-------GLTLTEQGSKLHRVTSEVYH 75 (299)
Q Consensus 5 ~~~L~~f~~v~~~gs~s~AA~~L-~itq~avS~~i~~LE~~lg~~Lf~R~~~-------~~~lT~~G~~l~~~a~~~l~ 75 (299)
|..+-..........|+.=.+.+ +||+..+|+++++||+. -|+.|... .+.||+.|+.|++....+..
T Consensus 15 W~l~IL~~L~~g~~RF~eL~~~l~gIS~~~Ls~rLk~Le~~---GLv~R~~~~~~p~~veY~LT~~G~~L~~il~~l~~ 90 (107)
T 2hzt_A 15 WKXVILXHLTHGKKRTSELKRLMPNITQKMLTQQLRELEAD---GVINRIVYNQVPPKVEYELSEYGRSLEGILDMLXA 90 (107)
T ss_dssp THHHHHHHHTTCCBCHHHHHHHCTTSCHHHHHHHHHHHHHT---TSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHC---CCHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 79999999981998699999776467988999999999987---84553125689995577778518899999999999
No 127
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=93.31 E-value=0.059 Score=29.43 Aligned_cols=200 Identities=11% Similarity=0.041 Sum_probs=82.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCC-CCCCCCCCCCCCCCC----CCC----C
Q ss_conf 222223332111000000000135667542000122222222---2222222-222223456543211----112----2
Q gi|254780282|r 90 KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMD-YADCAIRLRKPIQSS----SLI----Q 157 (299)
Q Consensus 90 ~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~-~~Di~i~~~~~~~~~----~l~----~ 157 (299)
...+.|+|.+..++. ..+.+++..|.++ |+++|++..... ...+..| ..|+.+....+.... ++. .
T Consensus 20 ~~~~~ltVy~a~s~~-~~~~~i~~~Fe~~-tgi~V~~~~~gs~~l~~~i~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 97 (253)
T 3gzg_A 20 HMTAPVTVFAAASLK-ESMDEAATAYEKA-TGTPVRVSYAASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQR 97 (253)
T ss_dssp --CCCEEEEEEGGGH-HHHHHHHHHHHHH-HSCCEEEEEECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGE
T ss_pred CCCCCEEEEEECCHH-HHHHHHHHHHHHH-HCCEEEEEECCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCC
T ss_conf 678778999815709-9999999999884-29779999787599999997399965999675767888751575222430
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCC--CCCCCC-CCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHH
Q ss_conf 3455543321123443211122--22221100011--235664-332110002356652022343212114532420013
Q gi|254780282|r 158 RKLVTIHMHAYAAPHYLKNCRE--PLSIQELDKHN--LITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 (299)
Q Consensus 158 ~~l~~~~~~~v~~~~~~~~~~~--~~~~~dL~~~~--~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 232 (299)
........+.+........... +....++.... .+...+ ..+........+...+....... ............
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~g~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~ 176 (253)
T 3gzg_A 98 HNLLGNTLVLVAPASSKLRVDPRAPGAIAKALGENGRLAVGQTASVPAGSYAAAALRKLGQWDSVSN-RLAESESVRAAL 176 (253)
T ss_dssp EEEEEECEEEEEETTCCCCCCTTSTTHHHHHTTTTCCEEEECTTTSHHHHHHHHHHHHTTCHHHHTT-SEEEESSHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCHHHHHCC-CCCCCCCCCCEE
T ss_conf 0001463002442133234586540328861588875999689888359999999999572444133-211045554003
Q ss_pred HHHHHHCC-EEEEEHHHHCC--CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 56787384-23311777601--998466177666766008999348778888999999999999
Q gi|254780282|r 233 QYCVLGSG-IALLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 233 ~~v~~g~G-ia~lp~~~~~~--~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
..+..|.+ +++...+.... .....-+.|........+.+.-.++.++ |.++.|+|||++.
T Consensus 177 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~P~eg~~~~~~~~avvk~a~~-~~A~~FidfllS~ 239 (253)
T 3gzg_A 177 MLVSRGEAPLGIVYGSDARADAKVRVVATFPDDSHDAIVYPVAALKNSNN-PATAAFVSWLGSK 239 (253)
T ss_dssp HHHHTTSSSEEEEEHHHHHHCTTEEEEEECCGGGSCCEEEEEEECTTCCC-TTHHHHHHHTTSH
T ss_pred EEECCCCCCEEEEHHHHHHHHCCCCEEEEECCCCCEEEEEEEEEECCCCC-HHHHHHHHHHCCH
T ss_conf 54214655377504348988468865999689884577876999889999-9999999997899
No 128
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=93.29 E-value=0.34 Score=24.99 Aligned_cols=184 Identities=10% Similarity=-0.026 Sum_probs=87.3
Q ss_pred CCCCCCCCCCCCCCC-----------CCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf 222333211100000-----------000013566754200012222222---222222222222234565--4321111
Q gi|254780282|r 92 SGKLRIATTIDLGQN-----------LLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIRLRK--PIQSSSL 155 (299)
Q Consensus 92 ~g~i~I~~~~~~~~~-----------~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~~~~--~~~~~~l 155 (299)
++.|+||....+.+. +..+++..+.++- ++++++...+ ....+..|++|+++.... +.....+
T Consensus 20 ~~~l~vg~~~~~pP~~~~~~~g~~~G~~vdl~~~i~~~l-g~~v~~~~~~~~~~~~~l~~g~~Di~~~~~~~~~~r~~~~ 98 (268)
T 3hv1_A 20 EKKIKIGFDATFVPMGYEEKDGSYIGFDIDLANAVFKLY-GIDVEWQAIDWDMKETELKNGTIDLIWNGYSVTDERKQSA 98 (268)
T ss_dssp HTEEEEEECTEETTTEEECTTSCEECHHHHHHHHHHHTT-TCEEEEEECCGGGHHHHHHHTSCSEECSSCBCCHHHHTTC
T ss_pred CCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHH-CCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHCE
T ss_conf 997999987898895589999988872999999999996-9965751588899999998699760023266785444115
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHH
Q ss_conf -2234555433211234432111222222110001123566433211000235665202234321211453242001356
Q gi|254780282|r 156 -IQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 (299)
Q Consensus 156 -~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 234 (299)
...+++....++++.++. ...+++||.+....... +..... ........ .....+.....++++...++.+
T Consensus 99 ~~s~py~~~~~~~v~~~~~-----~~~~~~dl~~~~i~v~~-gs~~~~-~~~~~~~~-~~~~~~~~~i~~~~~~~~~l~~ 170 (268)
T 3hv1_A 99 DFTEPYMVNEQVLVTKKSS-----GIDSVAGMAGKTLGAQA-GSSGYD-AFNASPKI-LKDVVANQKVVQYSTFTQALID 170 (268)
T ss_dssp EECCCCEEECEEEEEEGGG-----CCCSSGGGTTCCEEEET-TCHHHH-HHHHCTTT-TTTTSGGGCEEEESSHHHHHHH
T ss_pred EECCCCCCCCEEEEEECCC-----CCCCHHHHCCCCEEEEC-CCHHHH-HHHHHHHH-HHHCCCCCEEEECCCHHHHHHH
T ss_conf 6321213564368986899-----99997895798238866-850999-99986655-5431667324403999999999
Q ss_pred HHHHCC-EEEEEHHH----HCCCC--CEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHH
Q ss_conf 787384-23311777----60199--84661776667660089993487788889999999
Q gi|254780282|r 235 CVLGSG-IALLPDYI----VKDNP--NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 (299)
Q Consensus 235 v~~g~G-ia~lp~~~----~~~~~--~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d 288 (299)
+.+|.. ..+..... +++.+ ....+.+. ......+++..+++ ++.....++
T Consensus 171 L~~grvD~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~---~~~L~~~in 227 (268)
T 3hv1_A 171 LNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPA-GYEGESFAVGARKV---DKTLIKKIN 227 (268)
T ss_dssp HHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEEC-SSCCEEECCEECTT---CHHHHHHHH
T ss_pred HHCCCEEEEEECHHHHHHHHHHCCCCCCEEECCC-CCCCCEEEEEEECC---CHHHHHHHH
T ss_conf 9769757999438999999985898883033377-77774389998189---999999999
No 129
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=93.15 E-value=0.18 Score=26.63 Aligned_cols=46 Identities=11% Similarity=0.211 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCE
Q ss_conf 8889999999999827689999882899789999999999995882
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIK 48 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~ 48 (299)
++-++.+++..+++-.|...-|+.|++|..+|..+++++=+.||+.
T Consensus 22 LT~rE~~vl~lla~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~ 67 (82)
T 1je8_A 22 LTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp SCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999289999999897959999999999999983899
No 130
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=93.09 E-value=0.066 Score=29.15 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC----CC--CEEEEECCCCCCCCCCCC
Q ss_conf 8999999999982768999988289978999999999999588217976----99--468500134332222222
Q gi|254780282|r 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH----AR--GLTLTEQGSKLHRVTSEV 73 (299)
Q Consensus 5 ~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~----~~--~~~lT~~G~~l~~~a~~~ 73 (299)
|..+-..........|+.=.+.++||+..+|++++.||+. | |+.|. +. .+.||+.|+.|.+....+
T Consensus 25 W~~~Il~~l~~G~~RF~el~~~lgis~~~Ls~rL~~L~~~-G--Lv~r~~~~~p~r~eY~LT~~G~~L~pil~~l 96 (146)
T 2f2e_A 25 WSMLIVRDAFEGLTRFGEFQKSLGLAKNILAARLRNLVEH-G--VMVAVPAESGSHQEYRLTDKGRALFPLLVAI 96 (146)
T ss_dssp SHHHHHHHHHTTCCSHHHHHHHHCCCHHHHHHHHHHHHHT-T--SEEEEECSSSSCEEEEECHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-C--CEEEECCCCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 8999999997399679999988097789999999999988-9--8067668999815884686088999999999
No 131
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=93.03 E-value=0.34 Score=24.99 Aligned_cols=180 Identities=16% Similarity=0.134 Sum_probs=90.1
Q ss_pred CCCCCCCCCCCCCC-----------CCCCHHHHHHHHHHCCCCCCC-CCC---CCCCCCCCCCCCCCCCCC-CCCCCCC-
Q ss_conf 22333211100000-----------000013566754200012222-222---222222222222234565-4321111-
Q gi|254780282|r 93 GKLRIATTIDLGQN-----------LLQGNLKEFLLLYPDIQIQLI-LDN---KDIDISMDYADCAIRLRK-PIQSSSL- 155 (299)
Q Consensus 93 g~i~I~~~~~~~~~-----------~l~~~l~~f~~~~P~i~i~i~-~~~---~~~~l~~~~~Di~i~~~~-~~~~~~l- 155 (299)
+.|+||+.+...+. +..+++..+.+.. ++++++. ..+ ...++..|++|++..+.. +.....+
T Consensus 32 ~~l~v~~~~~~~P~~~~~~~g~~~G~~~dll~~i~~~l-g~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~t~~r~~~~~ 110 (267)
T 3mpk_A 32 PVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRT-GLDFEIIGVDTVEELIAKLRSGEADMAGALFVNSARESFLS 110 (267)
T ss_dssp SEEEEEEETEETTTEECCTTCCCBSHHHHHHHHHHHHH-CCEEEEEEESSHHHHHHHHHHTSCSEEEEEECCGGGTTTEE
T ss_pred CEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHCCCEEEEECCCCCHHHHHCCC
T ss_conf 93999984898995699899988778999999999984-99579998289999999863696659964789988984077
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHH
Q ss_conf 22345554332112344321112222221100011235664332110002356652022343212114532420013567
Q gi|254780282|r 156 IQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 (299)
Q Consensus 156 ~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v 235 (299)
...+++....+++..++. ....++++|.+..+.... +.. ....+... .+......+++...++.++
T Consensus 111 ~s~p~~~~~~~~v~~~~~----~~~~~~~~l~g~~i~~~~-g~~----~~~~l~~~-----~~~~~i~~~~~~~~~l~~L 176 (267)
T 3mpk_A 111 FSRPYVRNGMVIVTRQDP----DAPVDADHLDGRTVALVR-NSA----AIPLLQRR-----YPQAKVVTADNPSEAMLMV 176 (267)
T ss_dssp ECSCSEEECEEEEEESST----TSCSSGGGCTTCEEEEET-TCT----HHHHHHHH-----CTTSEEEEESSHHHHHHHH
T ss_pred CCCCEECCCEEEEEECCC----CCCCCHHHHCCCCEEEEC-CCH----HHHHHHHH-----CCCCEEEEECCHHHHHHHH
T ss_conf 676213044045420144----345798896587305541-540----56999972-----8874179980689877898
Q ss_pred HHHCCEEEE-EHHH----HCC--CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 873842331-1777----601--9984661776667660089993487788889999999999
Q gi|254780282|r 236 VLGSGIALL-PDYI----VKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 (299)
Q Consensus 236 ~~g~Gia~l-p~~~----~~~--~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~ 291 (299)
..|..=+++ +... +++ .+.+ .+.......+..+++..+++ ++.+...++-.+
T Consensus 177 ~~GrvDa~i~~~~~~~~~l~~~~~~~~-~v~~~~~~~~~~~~~~~~k~---~~~L~~~in~~L 235 (267)
T 3mpk_A 177 ANGQADAVVQTQISASYYVNRYFAGKL-RIASALDLPPAEIALATTRG---QTELMSILNKAL 235 (267)
T ss_dssp HHTSCSEEEEEHHHHHHHHHHHCTTTE-EEEEECSSCCEEEEEEEETT---CHHHHHHHHHHH
T ss_pred HCCCCCEEECCHHHHHHHHHHCCCCCE-EEEECCCCCCEEEEEEEECC---CHHHHHHHHHHH
T ss_conf 879867684279999999983899976-99504677752699999489---999999999999
No 132
>2q88_A EHUB, putative ABC transporter amino acid-binding protein; substrate-binding protein, compatible solues, osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=92.89 E-value=0.4 Score=24.58 Aligned_cols=190 Identities=12% Similarity=0.030 Sum_probs=83.6
Q ss_pred CCCCCCCCCCCCCCCC----------CCCCHHHHHHHHHHCCCCCCC-C---CCCCCCCCCCCCCCCCC-CC-CCCCCCC
Q ss_conf 2222333211100000----------000013566754200012222-2---22222222222222234-56-5432111
Q gi|254780282|r 91 PSGKLRIATTIDLGQN----------LLQGNLKEFLLLYPDIQIQLI-L---DNKDIDISMDYADCAIR-LR-KPIQSSS 154 (299)
Q Consensus 91 ~~g~i~I~~~~~~~~~----------~l~~~l~~f~~~~P~i~i~i~-~---~~~~~~l~~~~~Di~i~-~~-~~~~~~~ 154 (299)
.+|.||||+....... +..+++..+.++- ++++... . ......|..|++|+++. +. .+.....
T Consensus 11 ~~g~lrV~~~~~pP~~~~~~~G~~~G~~~dl~~~ia~~l-g~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~ 89 (257)
T 2q88_A 11 EQGFARIAIANEPPFTAVGADGKVSGAAPDVAREIFKRL-GVADVVASISEYGAMIPGLQAGRHDAITAGLFMKPERCAA 89 (257)
T ss_dssp HHTEEEEEECCCTTTCEECTTCCEESHHHHHHHHHHHHT-TCCEEEEEECCGGGHHHHHHTTSCSEECSCCBCCHHHHTT
T ss_pred CCCEEEEEECCCCCCEEECCCCCEEEHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHHHCCCCCEEEEEEECCHHHCCH
T ss_conf 299699998689994479999988878999999999993-9977998469999999999759988477643415432431
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHH
Q ss_conf 1-223455543321123443211122222211000112356643321100023566520223432121145324200135
Q gi|254780282|r 155 L-IQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 (299)
Q Consensus 155 l-~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 233 (299)
+ ...+++.....+++.++.+.......++.++........ .......++.. ...+......+++...++.
T Consensus 90 ~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~-----~g~~~~~~~~~----~~~~~~~i~~~~~~~~~~~ 160 (257)
T 2q88_A 90 VAYSQPILCDAEAFALKKGNPLGLKSYKDIADNPDAKIGAP-----GGGTEEKLALE----AGVPRDRVIVVPDGQSGLK 160 (257)
T ss_dssp SEECSCCCEECEEEEEETTCTTCCCBHHHHHHCTTCCEEEC-----TTSHHHHHHHH----TTCCGGGEEECSSHHHHHH
T ss_pred HHCCCCEECCCCEEEEECCCCCCCCCHHHHHHCCCCEEEEE-----CCCHHHHHHHH----CCCCCCCEEEEHHHHHHHH
T ss_conf 00586611267314675364113331334541478569983-----58569999998----1898662232001678889
Q ss_pred HHHHHCCEE-EEEHHHH----C--CCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 678738423-3117776----0--1998466177666766008999348778888999999999999
Q gi|254780282|r 234 YCVLGSGIA-LLPDYIV----K--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 234 ~v~~g~Gia-~lp~~~~----~--~~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
++..|..=+ +.+...+ + ....+..+.+....+...++++.+++ ++.....++.-+.+
T Consensus 161 ~l~~GrvD~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~k~---~~~L~~~in~~l~~ 224 (257)
T 2q88_A 161 MLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKG---DEALRDAFDVELAK 224 (257)
T ss_dssp HHHHTSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECGG---GHHHHHHHHHHHHH
T ss_pred HHHCCCEEEEEECHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEECCC---CHHHHHHHHHHHHH
T ss_conf 98769647999659999999984799986996156677631168998899---99999999999999
No 133
>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=92.80 E-value=0.35 Score=24.95 Aligned_cols=59 Identities=25% Similarity=0.322 Sum_probs=41.8
Q ss_pred CCCCH----HHHHHHHHHHHH-C--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEE
Q ss_conf 98888----999999999982-7--6899998828997899999999999958821797699468500
Q gi|254780282|r 1 MSFDW----DKLRVFYVVARS-G--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 (299)
Q Consensus 1 m~md~----~~L~~f~~v~~~-g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~ 61 (299)
|.|+. |+.+.+..+.+. + |.+.=|+.|+||..||-+-|+.||+. |.++ .+.++|..+-+
T Consensus 13 ~~m~~~k~eR~~~Il~~L~~~~~~vs~~eLa~~l~vS~~TIrrdi~~L~~~-G~~i-~~~~gGy~L~~ 78 (187)
T 1j5y_A 13 MHMKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSL-GYNI-VATPRGYVLAG 78 (187)
T ss_dssp --CHHHHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHH-TCCC-EEETTEEECCT
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEE-EEECCCEEECC
T ss_conf 756130999999999999985996769999999798999999999999977-9968-98469889677
No 134
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP}
Probab=92.65 E-value=0.025 Score=31.57 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=38.7
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEC
Q ss_conf 9999999982768999988289978999999999999588217976994685001
Q gi|254780282|r 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 (299)
Q Consensus 8 L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~ 62 (299)
|++|-.--..-+++.-|++++++.|++++-++.|++ .| .+.|+++++.|++.
T Consensus 20 L~~~~~~~~~~~~~eia~~~gl~~st~~RlL~tL~~-~G--~l~~~~~~Y~lG~~ 71 (257)
T 2g7u_A 20 LLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK-LG--YVAGSGGRWSLTPR 71 (257)
T ss_dssp HHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH-TT--SEEEETTEEEECGG
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH-CC--CEEECCCEEEECCH
T ss_conf 999984799989999999879399999999999997-38--65322983785504
No 135
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, thermophilic bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=92.64 E-value=0.44 Score=24.37 Aligned_cols=187 Identities=9% Similarity=0.003 Sum_probs=89.2
Q ss_pred CCCCCCCCCCCCCCCCCC----------CCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCC-CC-CCCCCC
Q ss_conf 222222333211100000----------000013566754200012222222---222222222222234-56-543211
Q gi|254780282|r 89 VKPSGKLRIATTIDLGQN----------LLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIR-LR-KPIQSS 153 (299)
Q Consensus 89 ~~~~g~i~I~~~~~~~~~----------~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~-~~-~~~~~~ 153 (299)
...+++|+||+...+.++ +-.+++..+.+.- ++++++...+ ....+..|++|+++. +. .+....
T Consensus 38 ~~~~~~l~Vg~~~~~~P~~~~~~G~~~G~~vDl~~~ia~~l-g~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~R~~ 116 (272)
T 2pvu_A 38 GATKKKVVVGTDAAFAPFEYMQKGKIVGFDVDLLDAVMKAA-GLDYELKNIGWDPLFASLQSKEVDMGISGITITDERKQ 116 (272)
T ss_dssp CCCCCCEEEEECCCBTTTBEEETTEEESHHHHHHHHHHHHH-TCCEEEEECCHHHHHHHHHHTSSSEECSSCBCCHHHHT
T ss_pred CCCCCEEEEEECCCCCCCEEEECCEEEEHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCHHHHC
T ss_conf 55589899998998789358569977881999999999980-99659997798999999975996689514557877741
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHH
Q ss_conf 11-22345554332112344321112222221100011235664332110002356652022343212114532420013
Q gi|254780282|r 154 SL-IQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 (299)
Q Consensus 154 ~l-~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 232 (299)
.+ ...+++....++++.++. ...+.++|.+...... . .......+...... ......+++...++
T Consensus 117 ~~~~s~p~~~~~~~~~~~~~~-----~~~~~~~l~~~~v~~~-~----g~~~~~~~~~~~~~----~~~i~~~~~~~~~~ 182 (272)
T 2pvu_A 117 SYDFSDPYFEATQVILVKQGS-----PVKNALDLKGKTIGVQ-N----ATTGQEAAEKLFGK----GPHIKKFETTVVAI 182 (272)
T ss_dssp TEEECSCCEEECEEEEEETTC-----CCCSGGGGTTSCEEEE-T----TSHHHHHHHHHHCS----STTEEEESSHHHHH
T ss_pred CCCCCCCCCCCCEEEEEECCC-----CCCCHHHHCCCEEEEE-C----CCCHHHHHHHHHCC----CCEEEECCCHHHHH
T ss_conf 055674630563789974487-----6788588679857762-5----76399999987344----87343042089999
Q ss_pred HHHHHHCC-EEEEEHHHH----CCCC--CEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 56787384-233117776----0199--8466177666766008999348778888999999999
Q gi|254780282|r 233 QYCVLGSG-IALLPDYIV----KDNP--NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 (299)
Q Consensus 233 ~~v~~g~G-ia~lp~~~~----~~~~--~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l 290 (299)
.++..|.. +.+.+...+ ++.+ .+..+..........++++.+++..+...+..+++-+
T Consensus 183 ~~l~~GrvD~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ln~al~~~ 247 (272)
T 2pvu_A 183 MELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKNV 247 (272)
T ss_dssp HHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETTCTTHHHHHHHHHHH
T ss_pred HHHHCCCCCEECCCHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 99985981165266598999998589987699516766676159999789989999999999999
No 136
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=92.50 E-value=0.24 Score=25.94 Aligned_cols=54 Identities=19% Similarity=0.081 Sum_probs=34.9
Q ss_pred CCCCCCCCCCCCCCC-CCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCC
Q ss_conf 222333211100000-0000135667542000122222222---222222222222345
Q gi|254780282|r 92 SGKLRIATTIDLGQN-LLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRL 146 (299)
Q Consensus 92 ~g~i~I~~~~~~~~~-~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~ 146 (299)
...++|+.+.+.... ++.+++.+|.+++ ++++++..... ...+..+..|+.+..
T Consensus 4 a~~~~~~~~~S~~~sgl~~~l~~~Fek~t-Gi~V~~~~g~sg~l~~~~~~~~~d~~~~~ 61 (237)
T 3muq_A 4 AEHVRLATTTSTYHSGLLDYLLPQFEKDT-GYKVDVIAAGTGKALKMGENGDVDLVMTH 61 (237)
T ss_dssp -CEEEEEEEHHHHHHTHHHHHHHHHHHHH-CCEEEEEEECHHHHHHHHHTTSSSEEEEC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH-CCEEEEEECCCHHHHHHHHCCCCCEEEEC
T ss_conf 87279999758740227999999999985-98799997784999999866898758851
No 137
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=92.45 E-value=0.2 Score=26.30 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCE
Q ss_conf 8889999999999827689999882899789999999999995882
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIK 48 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~ 48 (299)
++-++.+++..+++-.|...-|+.|++|..||..+++++=+.||+.
T Consensus 17 LT~rE~~vl~~l~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Klgv~ 62 (79)
T 1x3u_A 17 LSERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HCHHHHHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999079999999997988989999999999980899
No 138
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=92.42 E-value=0.19 Score=26.45 Aligned_cols=44 Identities=11% Similarity=0.215 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCE
Q ss_conf 89999999999827689999882899789999999999995882
Q gi|254780282|r 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIK 48 (299)
Q Consensus 5 ~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~ 48 (299)
+++.+.+..+++-.|...-|+.|++|..||..+++++-+.||+.
T Consensus 1 ~RE~evl~ll~~G~s~~eIA~~l~iS~~TV~~h~~~i~~Klgv~ 44 (61)
T 2jpc_A 1 LRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp CHHHHHHHHHHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 97999999998279999999896989999999999999881999
No 139
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled coil, structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=92.29 E-value=0.094 Score=28.25 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=55.0
Q ss_pred HHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 9998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r 13 VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 (299)
Q Consensus 13 ~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~ 82 (299)
++...++.|+=+...|+|-..+.+-+..|++ .-|+.-++.++.+|+.|+.+++..+.+.+.++.+..
T Consensus 16 ~~~~~~~~T~i~~~~nLs~~~~~~yl~~L~~---~GLI~~~~~~y~lTekG~~~L~~l~~~~~~l~~l~~ 82 (95)
T 1r7j_A 16 ACKSGSPKTRIMYGANLSYALTGRYIKMLMD---LEIIRQEGKQYMLTKKGEELLEDIRKFNEMRKNMDQ 82 (95)
T ss_dssp HHTTCBCHHHHHHHHTCCHHHHHHHHHHHHH---TTSEEEETTEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHCCCCHHHHHHHHHHHHH---CCCEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9766997759999819999999999999998---889241798469882389999999999999982999
No 140
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=92.21 E-value=0.47 Score=24.19 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCE
Q ss_conf 8889999999999827689999882899789999999999995882
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIK 48 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~ 48 (299)
++-++.+++..+++-.|...-|+.|++|..+|..+++++-+.||+.
T Consensus 35 LT~rE~~vl~ll~~G~s~~eIA~~l~iS~~TV~~~~~~i~~KL~v~ 80 (99)
T 1p4w_A 35 LSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 8999999999999389999997772998999999999999980999
No 141
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=92.11 E-value=0.34 Score=24.99 Aligned_cols=23 Identities=4% Similarity=0.166 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHHHHCCEEEE
Q ss_conf 99789999999999995882179
Q gi|254780282|r 29 LSQSSISRQISGLETEVGIKLFY 51 (299)
Q Consensus 29 itq~avS~~i~~LE~~lg~~Lf~ 51 (299)
-+...+...++.+-+.+|..=|.
T Consensus 16 ~~~~~l~~~l~~~~~~~Gf~~~~ 38 (234)
T 1l3l_A 16 GDECILKTGLADIADHFGFTGYA 38 (234)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 86999999999999977998799
No 142
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=91.99 E-value=0.46 Score=24.26 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHHHHCCEEEE
Q ss_conf 9789999999999995882179
Q gi|254780282|r 30 SQSSISRQISGLETEVGIKLFY 51 (299)
Q Consensus 30 tq~avS~~i~~LE~~lg~~Lf~ 51 (299)
++..+...+..+-+.+|..-|.
T Consensus 19 ~~~~l~~~l~~~~~~~Gf~~~~ 40 (236)
T 2q0o_A 19 DGHMIKIALRSFAHSCGYDRFA 40 (236)
T ss_dssp SHHHHHHHHHHHHHHHTCCEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9999999999999981998799
No 143
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=91.96 E-value=0.12 Score=27.68 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.0
Q ss_pred HHHHHCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9998276899998828997899999
Q gi|254780282|r 13 VVARSGSFTHAAEQLHLSQSSISRQ 37 (299)
Q Consensus 13 ~v~~~gs~s~AA~~L~itq~avS~~ 37 (299)
++.-.||.++-|+.|+||++|||+=
T Consensus 6 aI~~fG~~~~lA~~lgIs~~aVsqW 30 (61)
T 1rzs_A 6 VIDHFGTQRAVAKALGISDAAVSQW 30 (61)
T ss_dssp HHHHHSSHHHHHHHHTCCHHHHHHC
T ss_pred HHHHHCCHHHHHHHHCCCHHHHHHC
T ss_conf 9999689999999969999999874
No 144
>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=91.93 E-value=0.18 Score=26.61 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHCCHHHH--HHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8999999999982768999--988289978999999999999
Q gi|254780282|r 5 WDKLRVFYVVARSGSFTHA--AEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 5 ~~~L~~f~~v~~~gs~s~A--A~~L~itq~avS~~i~~LE~~ 44 (299)
.|.-..+..+.++|.+||+ |+.+++|+||||+.+++|.++
T Consensus 39 ~N~~~il~~i~~~g~iSR~ela~~tgLS~~Tvs~iv~~Li~~ 80 (429)
T 1z05_A 39 INAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDA 80 (429)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 999999999998499189999988795999999999999988
No 145
>2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} SCOP: c.124.1.8
Probab=91.86 E-value=0.022 Score=31.94 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=51.7
Q ss_pred HHHHHCCHHH--HHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCH---HHHHCC
Q ss_conf 9998276899--998828997899999999999958821797699468500134332222222222101---221001
Q gi|254780282|r 13 VVARSGSFTH--AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET---TQIELQ 85 (299)
Q Consensus 13 ~v~~~gs~s~--AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~---~~~~~~ 85 (299)
.++-.+.+++ =|++|++|.++||+-++.+.+. -|+.=+..|+.+|+.|+.+++..+.+...... ++..++
T Consensus 28 ~lyy~~~~~q~~IA~~lg~Sr~~V~r~l~~ar~~---GiV~i~~~g~~~t~~g~~~~~~l~~~~~~~~~~~~Le~~L~ 102 (345)
T 2o0m_A 28 NIYWMQPIGRRSLSETMGITERVLRTETDVLKQL---NLIEPSKSGMTLTERGLEVYQGLELVMNQLLGMHQIEKEMT 102 (345)
T ss_dssp ----------------------------------------------------------------------CHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEEECCCCEECCHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9988489799999988499775999999999987---97799647723510047888878865152215799999999
No 146
>2krf_A Transcriptional regulatory protein COMA; activator, competence, DNA-binding, transcription regulation component regulatory system; NMR {Bacillus subtilis}
Probab=91.80 E-value=0.46 Score=24.27 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCE
Q ss_conf 8889999999999827689999882899789999999999995882
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIK 48 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~ 48 (299)
++-++.+++..+++-.+...-|+.|++|..+|..+++++-+.||+.
T Consensus 13 Lt~rE~~vl~~~~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Kl~v~ 58 (73)
T 2krf_A 13 LTPRECLILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVG 58 (73)
T ss_dssp SCHHHHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 8999999999999589999984161888999999999999980999
No 147
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=91.73 E-value=0.19 Score=26.46 Aligned_cols=40 Identities=13% Similarity=0.242 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHCCHHHH--HHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8999999999982768999--988289978999999999999
Q gi|254780282|r 5 WDKLRVFYVVARSGSFTHA--AEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 5 ~~~L~~f~~v~~~gs~s~A--A~~L~itq~avS~~i~~LE~~ 44 (299)
.|.-..+..+.++|.+||+ |+.+++|+||||+-+++|.++
T Consensus 16 ~N~~~Il~~i~~~g~iSR~ela~~~gls~~Tvs~iv~~L~~~ 57 (406)
T 1z6r_A 16 TNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEA 57 (406)
T ss_dssp HHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 999999999998599189999988795999999999999988
No 148
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn- HEIX, structural genomics, PSI; HET: MSE; 2.16A {Porphyromonas gingivalis W83} SCOP: a.4.5.69
Probab=91.66 E-value=0.065 Score=29.18 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=39.4
Q ss_pred HHCCHHHHHHHH-CCCHHHHHHHHHHHHHHHCCEEEEECCC-------CEEEEECCCCCCCCCCCC
Q ss_conf 827689999882-8997899999999999958821797699-------468500134332222222
Q gi|254780282|r 16 RSGSFTHAAEQL-HLSQSSISRQISGLETEVGIKLFYRHAR-------GLTLTEQGSKLHRVTSEV 73 (299)
Q Consensus 16 ~~gs~s~AA~~L-~itq~avS~~i~~LE~~lg~~Lf~R~~~-------~~~lT~~G~~l~~~a~~~ 73 (299)
....|+.=.+.+ +||+..+|+++++||+. .|+.|... .+.||+.|+.|.+....+
T Consensus 37 g~~rF~el~~~l~~iS~~~Ls~rLk~Le~~---glI~r~~~~~~p~~v~Y~LT~~G~~L~~il~~l 99 (107)
T 2fsw_A 37 RIIRYGELKRAIPGISEKMLIDELKFLCGK---GLIKKKQYPEVPPRVEYSLTPLGEKVLPIIDEI 99 (107)
T ss_dssp SCEEHHHHHHHSTTCCHHHHHHHHHHHHHT---TSEEEEEECSSSCEEEEEECHHHHTTHHHHHHH
T ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHHHHC---CCEEECCCCCCCCCEEEEECCCHHHHHHHHHHH
T ss_conf 998899998774112778999999999988---781545679999955774681488999999999
No 149
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=91.55 E-value=0.59 Score=23.61 Aligned_cols=187 Identities=11% Similarity=0.028 Sum_probs=90.1
Q ss_pred CCCCCCCCCCCCCCCC------------CCCHHHHHHHHH--HCCCCCCCCCC---CCCCCCCCCCCCCCCCCCC--CCC
Q ss_conf 2223332111000000------------000135667542--00012222222---2222222222222345654--321
Q gi|254780282|r 92 SGKLRIATTIDLGQNL------------LQGNLKEFLLLY--PDIQIQLILDN---KDIDISMDYADCAIRLRKP--IQS 152 (299)
Q Consensus 92 ~g~i~I~~~~~~~~~~------------l~~~l~~f~~~~--P~i~i~i~~~~---~~~~l~~~~~Di~i~~~~~--~~~ 152 (299)
+|.|+||+.....+.. ..+++..+.+.. .++++++...+ ....+..|++|+++..... ...
T Consensus 37 ~~~l~V~~~~~~pP~~~~d~~~g~~~G~~~di~~~ia~~~~~~~~~v~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r~ 116 (259)
T 2v25_A 37 KGQLIVGVKNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSVDAVIATFTITPERK 116 (259)
T ss_dssp HTCEEEEECSEETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTSEEEEECCTTTHHHHHHTTSCSEECSSCBCCHHHH
T ss_pred CCEEEEEECCCCCCCEEEECCCCEEEEEEEHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 99899998289788324667898488898647656888727887579999833775899997699660033366897881
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHH
Q ss_conf 111-2234555433211234432111222222110001123566433211000235665202234321211453242001
Q gi|254780282|r 153 SSL-IQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231 (299)
Q Consensus 153 ~~l-~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 231 (299)
..+ ...++.....++++.++. ...+++||.+.... ...+.... .++........ +......+++...+
T Consensus 117 ~~~~fs~p~~~~~~~~~~~~~~-----~i~s~~dL~g~~I~-v~~gs~~~----~~l~~~~~~~~-~~~~~~~~~s~~~~ 185 (259)
T 2v25_A 117 RIYNFSEPYYQDAIGLLVLKEK-----KYKSLADMKGANIG-VAQAATTK----KAIGEAAKKIG-IDVKFSEFPDYPSI 185 (259)
T ss_dssp TTEEECSCSEEEEEEEEEEGGG-----CCCSGGGCTTCEEE-EETTCSHH----HHHHHHHHHTT-CCCEEEEESSHHHH
T ss_pred HCEEECEEEECCCCCEEEECCC-----CCCCHHHHCCCCCC-EECCCCHH----HHHHHHHHHCC-CCEEEECCCHHHHH
T ss_conf 0114220344045430220357-----97997892698500-23477077----88999998708-84444214207888
Q ss_pred HHHHHHHCCEEEE-EHHHHCCC--CCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 3567873842331-17776019--984661776667660089993487788889999999999998
Q gi|254780282|r 232 MQYCVLGSGIALL-PDYIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 (299)
Q Consensus 232 ~~~v~~g~Gia~l-p~~~~~~~--~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~ 294 (299)
+.++..|.-=+++ ....+... ... ++.+. +..+.++++..+++ +|.....++.-+++.
T Consensus 186 ~~~l~~g~vDa~i~d~~~~~~~~~~~~-~i~~~-~~~~~~~~~~~~k~---~~~l~~~ln~~l~~~ 246 (259)
T 2v25_A 186 KAALDAKRVDAFSVDKSILLGYVDDKS-EILPD-SFEPQSYGIVTKKD---DPAFAKYVDDFVKEH 246 (259)
T ss_dssp HHHHHTTSSSEEEEEHHHHTTTCCTTE-EECSC-CCSEEEECCEEETT---CHHHHHHHHHHHHHT
T ss_pred HHHHHCCEEEEEECCHHHHHHHHHHCC-CCCCC-CCCCEEEEEEEECC---CHHHHHHHHHHHHHH
T ss_conf 765427837899735999999997397-43578-77732699999589---999999999999982
No 150
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, protein structure initiative; 2.20A {Enterococcus faecalis V583} SCOP: a.4.5.69
Probab=91.53 E-value=0.15 Score=27.10 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHH-CCCHHHHHHHHHHHHHHHCCEEEEECC---C----CEEEEECCCCCCCCCCCCC
Q ss_conf 89999999999827689999882-899789999999999995882179769---9----4685001343322222222
Q gi|254780282|r 5 WDKLRVFYVVARSGSFTHAAEQL-HLSQSSISRQISGLETEVGIKLFYRHA---R----GLTLTEQGSKLHRVTSEVY 74 (299)
Q Consensus 5 ~~~L~~f~~v~~~gs~s~AA~~L-~itq~avS~~i~~LE~~lg~~Lf~R~~---~----~~~lT~~G~~l~~~a~~~l 74 (299)
|..+-..........|+.=.+.+ +||+..+|++++.||+. | |+.|.. . .+.||+.|+.|++....+.
T Consensus 23 W~l~Il~~L~~g~~rF~eL~~~l~gIS~~~Ls~rLk~L~~~-g--lv~r~~~~~~p~~veY~LT~~G~~L~pil~~l~ 97 (112)
T 1z7u_A 23 WKLSLMDELFQGTKRNGELMRALDGITQRVLTDRLREMEKD-G--LVHRESFNELPPRVEYTLTPEGYALYDALSSLC 97 (112)
T ss_dssp THHHHHHHHHHSCBCHHHHHHHSTTCCHHHHHHHHHHHHHH-T--SEEEEEECCSSCEEEEEECHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHC-C--CEEEEECCCCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 79999999972998799999776244778899999999988-9--836647799998436665823879999999999
No 151
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus}
Probab=91.50 E-value=0.24 Score=25.86 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=26.8
Q ss_pred HHHHHHHH-CCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999982-768999988289978999999999
Q gi|254780282|r 10 VFYVVARS-GSFTHAAEQLHLSQSSISRQISGL 41 (299)
Q Consensus 10 ~f~~v~~~-gs~s~AA~~L~itq~avS~~i~~L 41 (299)
...++-++ ||+++||+.|+|+.+++-+.|+++
T Consensus 24 I~~aL~~~~gn~s~aA~~Lgi~r~tL~~klkk~ 56 (63)
T 3e7l_A 24 IEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSL 56 (63)
T ss_dssp HHHHHHHTTTCHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999919989999999897999999999992
No 152
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=90.97 E-value=0.49 Score=24.07 Aligned_cols=46 Identities=20% Similarity=0.357 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCE
Q ss_conf 8889999999999827689999882899789999999999995882
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIK 48 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~ 48 (299)
++-++.+++..+++-.|...-|+.|++|..+|..+++++=+.+|+.
T Consensus 12 LT~rE~~vl~~l~~G~s~~eIA~~L~iS~~TV~~h~~~i~~Kl~v~ 57 (74)
T 1fse_A 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp CCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 7999999999999279999999997989999999999999995899
No 153
>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis}
Probab=90.86 E-value=0.69 Score=23.23 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHCCCCCCCC
Q ss_conf 00135667542000122222
Q gi|254780282|r 109 QGNLKEFLLLYPDIQIQLIL 128 (299)
Q Consensus 109 ~~~l~~f~~~~P~i~i~i~~ 128 (299)
...+..+++.+|++.+-+.+
T Consensus 63 ~~~~~~l~~~~~~~~vi~~t 82 (225)
T 3c3w_A 63 IELCRDLLSRMPDLRCLILT 82 (225)
T ss_dssp HHHHHHHHHHCTTCEEEEGG
T ss_pred HHHHHHHHCCCCCCCEEEEE
T ss_conf 58988753028998578631
No 154
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=90.80 E-value=0.066 Score=29.15 Aligned_cols=48 Identities=13% Similarity=0.273 Sum_probs=32.7
Q ss_pred HHHHHHHHHH-HHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC
Q ss_conf 9999999999-827689999882899789999999999995882179769
Q gi|254780282|r 6 DKLRVFYVVA-RSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA 54 (299)
Q Consensus 6 ~~L~~f~~v~-~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~ 54 (299)
..++.+..+. +..+++.=|+.|++|||+||+|++.||+. |.--..+.+
T Consensus 13 ~R~~Il~~L~~~~~~~~ela~~l~~s~~~v~~hL~~L~~a-glv~~~~~~ 61 (232)
T 2qlz_A 13 VRRDLLSHLTCMECYFSLLSSKVSVSSTAVAKHLKIMERE-GVLQSYEKE 61 (232)
T ss_dssp HHHHHHHHHTTTTTCSSSSCTTCCCCHHHHHHHHHHHHHT-TSEEEEEEC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEEEEC
T ss_conf 9999999998189779999999891988999999999868-986998626
No 155
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=90.75 E-value=0.15 Score=27.08 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=26.1
Q ss_pred HHHHHHHH-CCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999982-768999988289978999999999
Q gi|254780282|r 10 VFYVVARS-GSFTHAAEQLHLSQSSISRQISGL 41 (299)
Q Consensus 10 ~f~~v~~~-gs~s~AA~~L~itq~avS~~i~~L 41 (299)
.-.++.++ ||.++||+.|||+..++-+.|+++
T Consensus 63 I~~aL~~~~gn~~~aA~~LGisR~tL~~klk~~ 95 (98)
T 1eto_A 63 LDMVMQYTLGNQTRAALMMGINRGTLRKKLKKY 95 (98)
T ss_dssp HHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999919988999999798999999999986
No 156
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=90.55 E-value=0.27 Score=25.63 Aligned_cols=191 Identities=8% Similarity=0.035 Sum_probs=80.0
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC-CC---CCCCCCCCCCCCCCCCCCCCC-----CCCCCC---CCCC
Q ss_conf 23332111000000000135667542000122222-22---222222222222234565432-----111122---3455
Q gi|254780282|r 94 KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL-DN---KDIDISMDYADCAIRLRKPIQ-----SSSLIQ---RKLV 161 (299)
Q Consensus 94 ~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~-~~---~~~~l~~~~~Di~i~~~~~~~-----~~~l~~---~~l~ 161 (299)
+|+||..+.-.. .+...+..+.+++ ++++++.. ++ ....|..|++|+++.-..|.- ..+... -...
T Consensus 4 ti~iG~~~~~~~-~~l~~~k~~~k~~-Gl~Ve~~~f~~g~~~~~Al~sG~iD~~~~g~~p~l~~~~~~~~~~l~~v~~~~ 81 (241)
T 1xs5_A 4 TVGVGVLSEPHA-RLLEIAKEEVKKQ-HIELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFNQEHNGDLVSVGNVH 81 (241)
T ss_dssp EEEEEECSTTHH-HHHHHHHHHHHTT-TEEEEEEECSCHHHHHHHHHHTSSSEEEEEEHHHHHHHHHHHTCCEEEEEEEE
T ss_pred EEEEEECCCCHH-HHHHHHHHHHHHC-CCEEEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 299996069859-9999999999974-98899999388177899997699767985578899998854697389998841
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC--------C--------CCCCEEEE
Q ss_conf 5433211234432111222222110001123566433211000235665202234--------3--------21211453
Q gi|254780282|r 162 TIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG--------E--------PRISCLQV 225 (299)
Q Consensus 162 ~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--------~--------~~~~~~~~ 225 (299)
...+.++.++ ..++.|+.+-.-|...............+........ . ........
T Consensus 82 ~~~~~l~~~~--------~~s~~d~~~gk~ia~~~~~s~~~~~~~~l~~~~~~~l~~~~~~~~~~~Di~~~~~~~~~~~~ 153 (241)
T 1xs5_A 82 VEPLALYSRT--------YRHVSDFPAGAVIAIPNDSSNEARALRLLEAAGFIRMRAGSGLFATVEDVQQNVRNVVLQEV 153 (241)
T ss_dssp ECCCEEECSS--------CCSGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEEECTTCCEEEEE
T ss_pred CCCEEEEECC--------CCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHCCCCCCCCCC
T ss_conf 4654888368--------67766734887698258882799999999975881343688876776566534344542574
Q ss_pred CCCCHHHHHHHHH--CCEEEEEHHHHC--CCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH-HHHHCC
Q ss_conf 2420013567873--842331177760--19984661776667660089993487788889999999999-998506
Q gi|254780282|r 226 NSYLSIMQYCVLG--SGIALLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF-LKARDW 297 (299)
Q Consensus 226 ~s~~~~~~~v~~g--~Gia~lp~~~~~--~~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~-~~~r~~ 297 (299)
+ .....-..| .++..-+.+... ..+.-..+.......+....++.++....++.+++|++.+. +++++|
T Consensus 154 ~---~a~~a~~~~~vda~~~~~p~~~~a~~~~~~~~l~~~~~~~~~~~~lv~r~~~~~~~~i~~l~~a~~~~ev~~~ 227 (241)
T 1xs5_A 154 E---SALLPRVFDQVDGAVINGNYAIMAGLSARRDGLAVEPDASAYANVLVVKRGNEADARVQAVLRALCGGRVRTY 227 (241)
T ss_dssp C---GGGHHHHGGGSSEEEECHHHHHHTTCCTTTTCSEECSCGGGGCEEEEEETTCTTCHHHHHHHHHHTSHHHHHH
T ss_pred C---HHHHHHHCCCCCEEEECCCHHHHHCCCCCCCEEEECCCCCCEEEEEEECCHHHCCHHHHHHHHHHCCHHHHHH
T ss_conf 4---7677774277757996464899855887667799637898637999983401098999999999779999999
No 157
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=90.52 E-value=0.14 Score=27.20 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=25.4
Q ss_pred HHHHH-CCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99982-7689999882899789999999999
Q gi|254780282|r 13 VVARS-GSFTHAAEQLHLSQSSISRQISGLE 42 (299)
Q Consensus 13 ~v~~~-gs~s~AA~~L~itq~avS~~i~~LE 42 (299)
++.++ ||.++||+.|||+..++-+.|+++-
T Consensus 59 aL~~~~Gn~~~AA~~LGI~R~TL~~Klk~~g 89 (91)
T 1ntc_A 59 ALRHTQGHKQEAARLLGWGAATLTAKLKELG 89 (91)
T ss_dssp HHHHTTTCTTHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 9999689599999997989999999999878
No 158
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=90.43 E-value=0.16 Score=26.97 Aligned_cols=31 Identities=10% Similarity=0.276 Sum_probs=25.0
Q ss_pred HHHHHHH-HCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999998-276899998828997899999999
Q gi|254780282|r 10 VFYVVAR-SGSFTHAAEQLHLSQSSISRQISG 40 (299)
Q Consensus 10 ~f~~v~~-~gs~s~AA~~L~itq~avS~~i~~ 40 (299)
+..++.+ -||+++||+.|+||..++-+.|++
T Consensus 46 I~~aL~~~~GN~s~AAr~LGIsR~TLyrklkk 77 (81)
T 1umq_A 46 IQRIYEMCDRNVSETARRLNMHRRTLQRILAK 77 (81)
T ss_dssp HHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999997277999999979899999999997
No 159
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=90.36 E-value=0.75 Score=23.02 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=6.1
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 8888999999999
Q gi|254780282|r 278 KNTGKLKAFRNFI 290 (299)
Q Consensus 278 ~~~~~~~~f~d~l 290 (299)
.+|++-...+.|+
T Consensus 197 ~Ls~re~~il~~~ 209 (258)
T 3clo_A 197 ILSEREKEILRCI 209 (258)
T ss_dssp SSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
T ss_conf 9998999999999
No 160
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=90.32 E-value=0.43 Score=24.43 Aligned_cols=46 Identities=11% Similarity=0.295 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCE
Q ss_conf 8889999999999827689999882899789999999999995882
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIK 48 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~ 48 (299)
++-++.+++..+++-.+...-|+.|++|++||..+++++-+.||+.
T Consensus 30 LT~rE~evl~ll~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl~v~ 75 (91)
T 2rnj_A 30 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp CCSHHHHHHHHHHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 7999999999999289999999997889999999999999990999
No 161
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=90.15 E-value=0.25 Score=25.81 Aligned_cols=196 Identities=10% Similarity=0.054 Sum_probs=85.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC-CCC---CCCCCCCCCCCCCCCCCCCC-----CCCCC---C
Q ss_conf 222223332111000000000135667542000122222-222---22222222222234565432-----11112---2
Q gi|254780282|r 90 KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL-DNK---DIDISMDYADCAIRLRKPIQ-----SSSLI---Q 157 (299)
Q Consensus 90 ~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~-~~~---~~~l~~~~~Di~i~~~~~~~-----~~~l~---~ 157 (299)
....+|+||++++-...++...+..+.++. ++++++.. ++. ...|..|++|+.+.-..|.- ..+.. .
T Consensus 20 ~~~~~i~ig~~~~~~~~~~~~~v~~~~k~~-Gi~Ve~v~f~d~~~~n~AL~~G~iD~n~~q~~p~l~~~~~~~g~~l~~v 98 (275)
T 3gxa_A 20 AAKKEIVFGTTVGDFGDMVKEQIQPELEKK-GYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEV 98 (275)
T ss_dssp ---CEEEEEEETTHHHHHHHHTHHHHHHTT-TCEEEEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHHHHTCCEEEE
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHC-CCEEEEEEECCCHHHHHHHHCCCCCEECCCCHHHHHHHHHHCCCCEEEE
T ss_conf 888528999606987999999989999965-9879999957833578998669955431445788999999779967998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC-----------------CC
Q ss_conf 3455543321123443211122222211000112356643321100023566520223432-----------------12
Q gi|254780282|r 158 RKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-----------------RI 220 (299)
Q Consensus 158 ~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 220 (299)
......++.++.. ...+++|+.+-.-|...............+...+.....+ ..
T Consensus 99 ~~~~~~~~glys~--------k~ksl~dl~~G~kIaip~d~sn~~raL~~L~~~Gli~l~~~~~~~~~t~~di~~n~~~l 170 (275)
T 3gxa_A 99 FQVPTAPLGLYPG--------KLKSLEEVKDGSTVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTASKADIAENLKNI 170 (275)
T ss_dssp EECCBCCCEEEES--------SCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGCCGGGEEECTTCC
T ss_pred EEEECCCEEEEEC--------CCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHHHCCCCC
T ss_conf 5631155066632--------65654135899989982486368899999986695311688775545400043276564
Q ss_pred CEEEECCCCHHHHHHHHHCCEEEEEHHHHCCCC-CEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH-HHHHC
Q ss_conf 114532420013567873842331177760199-84661776667660089993487788889999999999-99850
Q gi|254780282|r 221 SCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNP-NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF-LKARD 296 (299)
Q Consensus 221 ~~~~~~s~~~~~~~v~~g~Gia~lp~~~~~~~~-~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~-~~~r~ 296 (299)
...+++.... .......-.++++...+...+ .............+...++.+++...++.++.|++.+. +++++
T Consensus 171 ~~~~~~~~~l--~~~l~dvD~avi~~~~~~~agl~~~~~l~~e~~~~y~nvivvr~~~~d~~~ik~l~ea~~s~ev~~ 246 (275)
T 3gxa_A 171 KIVELEAAQL--PRSRADVDFAVVNGNYAISSGMKLTEALFQEPSFAYVNWSAVKTADKDSQWLKDVTEAYNSDAFKA 246 (275)
T ss_dssp EEEEECGGGH--HHHTTTSSEEEECHHHHHHTTCCGGGCSEECCCCTTCCEEEEEGGGTTCHHHHHHHHHTTSHHHHH
T ss_pred EEEECCHHHH--HHHCCCCCEEEECCCHHHHCCCCHHHCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCHHHHH
T ss_conf 5998566663--131267558996464687759982340002778763699998076779599999999976999999
No 162
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution; 1.40A {Xylella fastidiosa ann-1}
Probab=89.55 E-value=0.39 Score=24.65 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=25.1
Q ss_pred HHHHHHCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99998276899998828997899999999
Q gi|254780282|r 12 YVVARSGSFTHAAEQLHLSQSSISRQISG 40 (299)
Q Consensus 12 ~~v~~~gs~s~AA~~L~itq~avS~~i~~ 40 (299)
.++...||-++-|+.|+|||++||+=+.+
T Consensus 6 ~AI~~~G~q~~lAr~lGVsq~aVs~W~~~ 34 (79)
T 3bd1_A 6 IAINKLGSVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp HHHHHHSSHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHCCCHHHHHHHHHC
T ss_conf 99999689999999929999999999846
No 163
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli}
Probab=89.45 E-value=0.041 Score=30.33 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHH--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8888999999999982--768999988289978999999999999
Q gi|254780282|r 2 SFDWDKLRVFYVVARS--GSFTHAAEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~--gs~s~AA~~L~itq~avS~~i~~LE~~ 44 (299)
+||=-+.+.+..+.+- -|++.-|+++|+|+++|.++|++||+.
T Consensus 10 ~lD~~D~~Il~~L~~d~R~s~~~IA~~lg~S~~tV~~Ri~rL~~~ 54 (163)
T 2gqq_A 10 DLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQ 54 (163)
T ss_dssp -CCSHHHHHHHHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 244999999999998589999999999890999999999999957
No 164
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=89.36 E-value=0.46 Score=24.27 Aligned_cols=191 Identities=10% Similarity=0.068 Sum_probs=88.0
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC-CCCC---CCCCCCCCCCCCCCCCCCCC-----C--CCC-CCCCC
Q ss_conf 23332111000000000135667542000122222-2222---22222222222345654321-----1--112-23455
Q gi|254780282|r 94 KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL-DNKD---IDISMDYADCAIRLRKPIQS-----S--SLI-QRKLV 161 (299)
Q Consensus 94 ~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~-~~~~---~~l~~~~~Di~i~~~~~~~~-----~--~l~-~~~l~ 161 (299)
+|+||++++-...++-..+....++. ++++++.. ++.. ..|..|++|+-+.-..+.-. . +|. .-+.+
T Consensus 2 ~i~vg~~~~p~~~~~~e~vk~~~k~~-Gi~vevv~f~D~~~~N~AL~~GeiDaN~fQh~~yl~~~n~~~g~~L~~v~~~~ 80 (245)
T 3ir1_A 2 EIVFGTTVGDFGDMVKEQIQPELEKK-GYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEVFQVP 80 (245)
T ss_dssp EEEEEEETTHHHHHHHHTHHHHHHTT-TCEEEEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHHHHTCCEEEEEECC
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEEECCCCHHHHHHHCCCCCEEHHCCHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 59998078987999999988999965-97699999568521779986699652312279999999998599669986654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC----------------CCC-CCEEE
Q ss_conf 5433211234432111222222110001123566433211000235665202234----------------321-21145
Q gi|254780282|r 162 TIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG----------------EPR-ISCLQ 224 (299)
Q Consensus 162 ~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~-~~~~~ 224 (299)
..++.++.. ...+++|+.+-.-|..........+-...+...+.-.. .+. ....+
T Consensus 81 ~~p~glYS~--------k~ksl~dlp~Ga~IaIpnD~sn~~RaL~lL~~~GlI~lk~~~~~~~~t~~DI~~Npk~l~~~e 152 (245)
T 3ir1_A 81 TAPLGLYPG--------KLKSLEEVKDGSTVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTASKADIAENLKNIKIVE 152 (245)
T ss_dssp BCCCEEEES--------SCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGCCGGGEEECTTCCEEEE
T ss_pred ECCEEEECC--------CCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCEEEE
T ss_conf 424276516--------868665679999899745865899999999878938965898866477645415564665787
Q ss_pred ECCCCHHHHHHHHHCCEEEEEHHHHCCCC-CEE-EECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH-HHHHC
Q ss_conf 32420013567873842331177760199-846-61776667660089993487788889999999999-99850
Q gi|254780282|r 225 VNSYLSIMQYCVLGSGIALLPDYIVKDNP-NLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF-LKARD 296 (299)
Q Consensus 225 ~~s~~~~~~~v~~g~Gia~lp~~~~~~~~-~lv-~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~-~~~r~ 296 (299)
++...+.. .....-.++++...+...| ... .+..+ +..+....++.+++...++.++.|.+.+. .++++
T Consensus 153 v~~a~l~~--al~dvD~avi~~~~~~~agl~~~~~l~~e-~~~~y~~~~vvr~~d~d~~~ik~l~~a~~s~~v~~ 224 (245)
T 3ir1_A 153 LEAAQLPR--SRADVDFAVVNGNYAISSGMKLTEALFQE-PSFAYVNWSAVKTADKDSQWLKDVTEAYNSDAFKA 224 (245)
T ss_dssp ECGGGSGG--GGGTSSEEEECHHHHHHTTCCGGGCSEEC-CCCTTCCEEEEEGGGTTCHHHHHHHHHTTSHHHHH
T ss_pred CCHHHHHH--HCCCCCEEEECCHHHHHCCCCHHHCEEEC-CCCCEEEEEEEECCCCCCHHHHHHHHHHCCHHHHH
T ss_conf 68888555--32567789971406978797823400107-88872899998076679899999999977999999
No 165
>1yyv_A Putative transcriptional regulator; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 2.35A {Salmonella typhimurium LT2} SCOP: a.4.5.69
Probab=89.29 E-value=0.12 Score=27.57 Aligned_cols=56 Identities=14% Similarity=0.300 Sum_probs=33.2
Q ss_pred HHCCHHHHHHHH-CCCHHHHHHHHHHHHHHHCCEEEEECC---C----CEEEEECCCCCCCCCCCCC
Q ss_conf 827689999882-899789999999999995882179769---9----4685001343322222222
Q gi|254780282|r 16 RSGSFTHAAEQL-HLSQSSISRQISGLETEVGIKLFYRHA---R----GLTLTEQGSKLHRVTSEVY 74 (299)
Q Consensus 16 ~~gs~s~AA~~L-~itq~avS~~i~~LE~~lg~~Lf~R~~---~----~~~lT~~G~~l~~~a~~~l 74 (299)
....|+.=.+.+ ++|+..+|++++.||+. -|+.|.. . -+.||+.|+.|.+....+.
T Consensus 47 G~~RF~el~~~l~gis~~vLs~rLk~Le~~---glV~r~~~~~~p~~veY~LT~~G~~L~~il~~l~ 110 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGVSEXMLAQSLQALEQD---GFLNRVSYPVVPPHVEYSLTPLGEQVSDXVAALA 110 (131)
T ss_dssp CCEEHHHHHHHSTTCCHHHHHHHHHHHHHH---TCEEEEEECSSSCEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHHHHC---CCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 999899999772134658899999999978---9668656799999557766800889999999999
No 166
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=88.93 E-value=1 Score=22.30 Aligned_cols=166 Identities=7% Similarity=-0.034 Sum_probs=79.4
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCC-C-CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00013566754200012222222---2222222222222345-6-543211112-2345554332112344321112222
Q gi|254780282|r 108 LQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIRL-R-KPIQSSSLI-QRKLVTIHMHAYAAPHYLKNCREPL 181 (299)
Q Consensus 108 l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~~-~-~~~~~~~l~-~~~l~~~~~~~v~~~~~~~~~~~~~ 181 (299)
..+++..+.++- ++++++...+ ....+..|++|+++.. . .+.....+. ..+++....++++.++- ....
T Consensus 28 ~~dl~~~ia~~~-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~----~~~~ 102 (226)
T 1wdn_A 28 DVDLWAAIAKEL-KLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANN----NDVK 102 (226)
T ss_dssp HHHHHHHHHHHH-TCCEEEEEECGGGHHHHHHTTSSSEEEEEEECCHHHHTTSEECSCCEEEEEEEEEETTC----CSCS
T ss_pred HHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHCCEEEECCCEEEEEEEEEEECCC----CCCC
T ss_conf 999999999996-99669997899999999876998657442123541325488245569977799999999----9999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCEEE-EEHH----HHCCC--CC
Q ss_conf 22110001123566433211000235665202234321211453242001356787384233-1177----76019--98
Q gi|254780282|r 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL-LPDY----IVKDN--PN 254 (299)
Q Consensus 182 ~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gia~-lp~~----~~~~~--~~ 254 (299)
+++||.+... +...+.. ...++.... +......+++...+..++..|..=++ .... .++.. ..
T Consensus 103 ~~~dl~g~~v-~~~~g~~----~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~g~vD~~i~~~~~~~~~~~~~~~~~ 172 (226)
T 1wdn_A 103 SVKDLDGKVV-AVKSGTG----SVDYAKANI-----KTKDLRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQ 172 (226)
T ss_dssp SSTTTTTCEE-EEETTSH----HHHHHHHHC-----CCSEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTTTT
T ss_pred CHHHHCCCEE-EEECCCC----CCCHHHHHC-----CCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCC
T ss_conf 9799589999-9987866----420123430-----35523650778999988745846899916188888876415674
Q ss_pred EEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 466177666766008999348778888999999999999
Q gi|254780282|r 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 255 lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
...+.+ .....+++++.+++ ++.....++.-+++
T Consensus 173 ~~~~~~--~~~~~~~~~~~~k~---~~~l~~~~n~~l~~ 206 (226)
T 1wdn_A 173 FKAVGD--SLEAQQYGIAFPKG---SDELRDKVNGALKT 206 (226)
T ss_dssp EEEEEE--EEEEEEEEEEECTT---CHHHHHHHHHHHHH
T ss_pred EEEECC--CCCCCCEEEEEECC---CHHHHHHHHHHHHH
T ss_conf 055155--67776189999799---99999999999999
No 167
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=88.06 E-value=0.92 Score=22.52 Aligned_cols=74 Identities=11% Similarity=-0.023 Sum_probs=36.3
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCC
Q ss_conf 223332111000000000135667542000122222---2222222222222223456543211-----11223455543
Q gi|254780282|r 93 GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL---DNKDIDISMDYADCAIRLRKPIQSS-----SLIQRKLVTIH 164 (299)
Q Consensus 93 g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~---~~~~~~l~~~~~Di~i~~~~~~~~~-----~l~~~~l~~~~ 164 (299)
+.|+.+-+ +....++-.+..+|.+.+| ++|.+.. +....++..|.+|++. ...++.+. ++...++....
T Consensus 2 ~~i~g~GS-s~v~p~~~~~a~~f~~~~~-~~v~~~~~GSg~G~~~~~~G~~dia~-ssr~l~~~e~~~~~~~~~~~~~~~ 78 (321)
T 1ixh_A 2 ASLTGAGA-TFPAPVYAKWADTYQKETG-NKVNYQGIGSSGGVKQIIANTVDFGA-SDAPLSDEKLAQEGLFQFPTVIGG 78 (321)
T ss_dssp CEEEEEEC-STTHHHHHHHHHHHHHHHC-CEEEEEECCHHHHHHHHHTTCSSEEE-ESSCCCHHHHHHHTEEEEEEEEEE
T ss_pred CEEEEECH-HHHHHHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHCCCCCEEE-CCHHHCHHHHHHCCCCEEEEEEEE
T ss_conf 50899717-1799999999999998589-86899747869999999749983898-284258999977699213788765
Q ss_pred CCCCC
Q ss_conf 32112
Q gi|254780282|r 165 MHAYA 169 (299)
Q Consensus 165 ~~~v~ 169 (299)
+.+++
T Consensus 79 ~~~~v 83 (321)
T 1ixh_A 79 VVLAV 83 (321)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 89999
No 168
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=87.94 E-value=1.2 Score=21.92 Aligned_cols=193 Identities=9% Similarity=-0.021 Sum_probs=85.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC--C--CCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCC---
Q ss_conf 22223332111000000000135667542000122222--2--2222222222222234565432---111122345---
Q gi|254780282|r 91 PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL--D--NKDIDISMDYADCAIRLRKPIQ---SSSLIQRKL--- 160 (299)
Q Consensus 91 ~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~--~--~~~~~l~~~~~Di~i~~~~~~~---~~~l~~~~l--- 160 (299)
...+||||..+......+...-.-|.++.+++++++.. + +....|..|++|++.....+.- ..+...+.+
T Consensus 27 ~~~~lrIg~~~~~~~~~va~~~G~f~~~~~~~~v~~~~~~~g~~~~~al~sG~~D~~~~~~~~~~~~~~~G~~~~~v~~~ 106 (324)
T 3ksx_A 27 EPAQLRIGYQKAVSSLVLAKQHRLLEQRFPRTKITWVEFPAGPQLLEALNVGSIDLGGAGDIPPLFAQAAGADLLYVGWV 106 (324)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHTHHHHHCTTSEEEEEEESSHHHHHHHHHTTSCSEEEEESHHHHHHHHTTCCEEEEEEE
T ss_pred CCCEEEEEEECCCCHHHHHHHHCHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCEEEEEEE
T ss_conf 99759999616865799999848697838998279997897799999998499288964659999999879985999989
Q ss_pred CCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHH
Q ss_conf 554--332112344321112222221100011235664332110002356652022343212114532420013567873
Q gi|254780282|r 161 VTI--HMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 (299)
Q Consensus 161 ~~~--~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g 238 (299)
... ...+++.++ ....+++||.+-.+ ..............++...+.... ......++ ...+..+..+|
T Consensus 107 ~~~~~~~~iv~~~~-----s~i~s~~DLkGK~v-~v~~gs~~~~~l~~~L~~~Gl~~~--dV~~v~~~-~~~~~~al~~G 177 (324)
T 3ksx_A 107 PPTPKAETILVPSK-----SALRTVADLKGKRI-AFQKGSSAHNLLLRVLAKSGLSMR--DITPLYLS-PANARAAFAAG 177 (324)
T ss_dssp CCCGGGEEEEEETT-----CSCCSGGGGTTCEE-EECTTSHHHHHHHHHHHHTTCCGG--GSEEEECC-HHHHHHHHHTT
T ss_pred ECCCCCEEEEEECC-----CCCCCHHHHCCCEE-EEECCCCCHHHHHHHHHHCCCCCC--CCCEEECC-HHHHHHHHHCC
T ss_conf 63798428998089-----99999789389989-875687306799999998799732--35401258-26666665313
Q ss_pred C-CEEEEEHH---HHCCCCCEEEECC-CCCCCCCEEEEEECCC--CCCCHHHHHHHHHHHHH
Q ss_conf 8-42331177---7601998466177-6667660089993487--78888999999999999
Q gi|254780282|r 239 S-GIALLPDY---IVKDNPNLVRIME-DVITPSFTVYFCYPEA--LKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 239 ~-Gia~lp~~---~~~~~~~lv~i~~-~~~~~~~~~~lv~~~~--~~~~~~~~~f~d~l~~~ 293 (299)
. -.++++.. .+...|....+.. ........+ ++.+++ ...+..+++|++.+.+.
T Consensus 178 ~vDa~~~~~p~~~~~~~~g~~~~l~~~~~~~~~~~~-~~~~~~~~~~~p~~v~~fl~a~~~a 238 (324)
T 3ksx_A 178 QVDAWAIWDPWYSALTLDGSARLLANGEGLGLTGGF-FLSSRRYATAWGPFVQQVMGTLNQA 238 (324)
T ss_dssp CCSEEEEETTHHHHHHHTTSEEEEEESTTSCCCCEE-EEEEHHHHHHTHHHHHHHHHHHHHH
T ss_pred CCCEEEECCHHHHHHHHCCCCEEEECCCCCCCCCCE-EEECHHHHHHCHHHHHHHHHHHHHH
T ss_conf 500999815799999974994899714446876643-8985888867989999999999999
No 169
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=87.70 E-value=1.2 Score=21.83 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHH----HHC---CHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 988889999999999----827---68999988289978999999999999
Q gi|254780282|r 1 MSFDWDKLRVFYVVA----RSG---SFTHAAEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 1 m~md~~~L~~f~~v~----~~g---s~s~AA~~L~itq~avS~~i~~LE~~ 44 (299)
|+|+-+|-+++-.+. +.| |+..=|+.++++.+++.++++.||+.
T Consensus 1 m~LT~kq~~il~~I~~~~~~~G~~PS~reIa~~~Giss~s~v~~L~~Le~k 51 (196)
T 3k2z_A 1 MDLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKK 51 (196)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 998989999999999999984989669999998299964578889999875
No 170
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=86.69 E-value=0.73 Score=23.10 Aligned_cols=10 Identities=20% Similarity=0.394 Sum_probs=4.4
Q ss_pred HHHHCCCCCC
Q ss_conf 5420001222
Q gi|254780282|r 117 LLYPDIQIQL 126 (299)
Q Consensus 117 ~~~P~i~i~i 126 (299)
..+|++.+=+
T Consensus 79 ~~~p~~~viv 88 (225)
T 3klo_A 79 ISCPDAKEVI 88 (225)
T ss_dssp HHCTTCEEEE
T ss_pred HHCCCCEEEE
T ss_conf 7589984999
No 171
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: LYS; 2.62A {Wolinella succinogenes}
Probab=85.96 E-value=1.5 Score=21.27 Aligned_cols=187 Identities=10% Similarity=0.006 Sum_probs=82.1
Q ss_pred CCCCCCCCCCCCCCCC-----------CCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCC-CC-CCCCCC
Q ss_conf 2222333211100000-----------000013566754200012222222---2222222222222345-65-432111
Q gi|254780282|r 91 PSGKLRIATTIDLGQN-----------LLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIRL-RK-PIQSSS 154 (299)
Q Consensus 91 ~~g~i~I~~~~~~~~~-----------~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~~-~~-~~~~~~ 154 (299)
.+|.|+||+...+.+. +..+++..+.+.- ++++++.... ....+..++.|+++.. .. +.....
T Consensus 3 ~rg~lrvgv~~~~pP~~~~d~~g~~~G~~~Dl~~~i~~~l-g~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~ 81 (245)
T 3k4u_A 3 LRGELRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAKAM-GVKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQERNLR 81 (245)
T ss_dssp CCSEEEEEECTTSTTTCEEETTTEEESHHHHHHHHHHHHH-TCEEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTT
T ss_pred CCCEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCHHHHHH
T ss_conf 8878999982898893689999988872999999999994-996699733708889998669977898678568777753
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHH
Q ss_conf 1-223455543321123443211122222211000112356643321100023566520223432121145324200135
Q gi|254780282|r 155 L-IQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 (299)
Q Consensus 155 l-~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 233 (299)
+ ...+++.....++..+..... ..+.+++........ .........+..... +......+++...++.
T Consensus 82 ~~~s~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~l~ 150 (245)
T 3k4u_A 82 VNFVEPYIVVGQSLLVKKGLEKG---VKSYKDLDKPELTLV---TKFGVSAEYAAKRLF-----KNAKLKTYDTEAEAVQ 150 (245)
T ss_dssp SEECSCSEEECEEEEEETTTTTT---CCSGGGGCCSSCEEE---EETTSHHHHHHHHHC-----SSSEEEEESSHHHHHH
T ss_pred CCCCCCEECCCCCCHHCCCCCCC---CCCHHHHCCCCCCCC---CCCCCHHHHHHHHHC-----CCCEEEEEECCHHHHH
T ss_conf 34678612044110001465444---678778514554213---477723789999737-----7862899842178999
Q ss_pred HHHHHCCEE-EEEHHHH----CCC--CCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 678738423-3117776----019--984661776667660089993487788889999999999998
Q gi|254780282|r 234 YCVLGSGIA-LLPDYIV----KDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 (299)
Q Consensus 234 ~v~~g~Gia-~lp~~~~----~~~--~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~ 294 (299)
++..|..=+ +.....+ .+. +..+.+. .+....+++++.+++ +|.....++.-+++.
T Consensus 151 ~L~~GrvD~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~---~~~l~~~in~~l~~l 213 (245)
T 3k4u_A 151 EVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLD--TSLTYEPLGWAIKKG---DPDFLNWLNHFLAQI 213 (245)
T ss_dssp HHHSSSSEEEEEEHHHHHHHHHHTTTTTEEEEC--CCCSCEEECCEECTT---CHHHHHHHHHHHHHH
T ss_pred HHHCCCCCEEEECCHHHHHHHHHCCCCCCCEEE--CCCCCCEEEEEEECC---CHHHHHHHHHHHHHH
T ss_conf 997799659997327777999864876642122--147776189999699---999999999999999
No 172
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix- turn-helix, UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=85.94 E-value=0.84 Score=22.73 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=32.4
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEE
Q ss_conf 689999882899789999999999995882179769946850
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT 60 (299)
|-..=|+.++||..||.+.|+.|+++ | |+.|.|+|...+
T Consensus 38 sE~eLa~~~~VSR~TVR~Al~~L~~e-G--lI~rrG~GtfV~ 76 (248)
T 3f8m_A 38 AEREIAEQFEVARETVRQALRELLID-G--RVERRGRTTVVA 76 (248)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHT-T--SEEEETTEEEEC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC-C--CEECCCCCEEEC
T ss_conf 79999999797999999999999977-8--887146432861
No 173
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=85.62 E-value=0.38 Score=24.71 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHH---CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-CCCEEEEEC
Q ss_conf 999999999982---768999988289978999999999999588217976-994685001
Q gi|254780282|r 6 DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-ARGLTLTEQ 62 (299)
Q Consensus 6 ~~L~~f~~v~~~---gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~-~~~~~lT~~ 62 (299)
+-|..+..+++. -+++.-|++++++.|++++-++.|++. |. ..|. .+++.|++.
T Consensus 9 Ral~IL~~~a~~~~~~tl~eia~~lglpksT~~Rll~tL~~~-G~--l~~~~~~~Y~lG~~ 66 (249)
T 1mkm_A 9 KAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEK-GF--VLRKKDKRYVPGYK 66 (249)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHT-TS--EEECTTSCEEECTH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CC--EEECCCCCHHHHHH
T ss_conf 999999999738999899999998791999999999999977-98--65325532013246
No 174
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=84.55 E-value=0.15 Score=27.11 Aligned_cols=52 Identities=12% Similarity=0.237 Sum_probs=37.0
Q ss_pred HHHHHHHH---HHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-CCEEEEEC
Q ss_conf 99999999---827689999882899789999999999995882179769-94685001
Q gi|254780282|r 8 LRVFYVVA---RSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-RGLTLTEQ 62 (299)
Q Consensus 8 L~~f~~v~---~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~ 62 (299)
|..+..++ ..-+++.-|+.++++.|++++-++.|+ +.|. ..|.+ +++.|++.
T Consensus 26 l~ILe~l~~~~~~~~l~eia~~lgl~~sT~~RlL~tL~-~~G~--l~~~~~g~Y~lG~~ 81 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMC-ARSV--LTSRADGSYSLGPE 81 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHH-HTTS--EEECTTSCEEECHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHH-HCCE--EEEECCCCEECCHH
T ss_conf 99999997479998999999997919999999999999-7887--89805542653789
No 175
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=84.20 E-value=1.8 Score=20.79 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHH--H-CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCEEEEECCC
Q ss_conf 88899999999998--2-768999988289978999999999999588217976-------99468500134
Q gi|254780282|r 3 FDWDKLRVFYVVAR--S-GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-------ARGLTLTEQGS 64 (299)
Q Consensus 3 md~~~L~~f~~v~~--~-gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~-------~~~~~lT~~G~ 64 (299)
++--+-+.+..+.. . -+++.=|+.+++|.|+||+.|++|++. -|+.|. ...+.+|+.|.
T Consensus 24 l~~~~~~il~~L~~~~~p~t~~eLa~~l~is~s~vs~~l~~L~~~---GlV~r~~~~~drr~~~~~lt~~~~ 92 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEEL---GFVRKVWIKGERKNYYEAVDGFSS 92 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEEECCTTCSSCEEEECCHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHH
T ss_conf 899999999999976989299999999896885799999999988---998985379888756877486877
No 176
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=84.10 E-value=0.94 Score=22.47 Aligned_cols=191 Identities=10% Similarity=-0.025 Sum_probs=80.4
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC--C--CCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCC---C-C
Q ss_conf 23332111000000000135667542000122222--2--2222222222222234565432---111122345---5-5
Q gi|254780282|r 94 KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL--D--NKDIDISMDYADCAIRLRKPIQ---SSSLIQRKL---V-T 162 (299)
Q Consensus 94 ~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~--~--~~~~~l~~~~~Di~i~~~~~~~---~~~l~~~~l---~-~ 162 (299)
+||||..++.....+..--.-|.+...+++|++.. + +....|..|++|++.....+.- ..+...+.+ . .
T Consensus 4 ~irIGy~~~~~~~~va~~~g~fe~~g~~~~Ve~~~~~~g~~~~~al~~G~iD~~~~~~~~~l~~~~~G~~~~~v~~~~~~ 83 (308)
T 2x26_A 4 ALRIGYQKGSIGMVLAKSHQLLEKRYPESKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPK 83 (308)
T ss_dssp EEEEEECTTCHHHHHHHHTTHHHHHCTTSEEEEEECSSHHHHHHHHHHTSCSEEEECSHHHHHHHHTTCCEEEEEEECCC
T ss_pred EEEEEECCCCHHHHHHHHHCHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 49997578854999999709787718998079997898799999998499788995739999999879897999997057
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCC-
Q ss_conf 43-3211234432111222222110001123566433211000235665202234321211453242001356787384-
Q gi|254780282|r 163 IH-MHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG- 240 (299)
Q Consensus 163 ~~-~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~G- 240 (299)
.. ..++++++ ....+++||.+-.. ..............++...+.... ......++ ...+..+..+|.-
T Consensus 84 ~~~~~~~~~~~-----s~i~s~~DLkGK~I-av~~g~~~~~~~~~~L~~~Gl~~~--dv~~v~~~-~~~~~~al~~g~vd 154 (308)
T 2x26_A 84 PKAEVILVAEN-----SPIKTVADLKGHKV-AFQKGSSSHNLLLRALRQAGLKFT--DIQPTYLT-PADARAAFQQGNVD 154 (308)
T ss_dssp GGGEEEEEETT-----CSCCSGGGGTTSEE-EECTTSHHHHHHHHHHHHTTCCGG--GSEEEECC-HHHHHHHHHTTSSS
T ss_pred CCEEEEEECCC-----CCCCCHHHHCCCCC-CCCCCCHHHHHHHHHHHHCCCCCC--CEEEEECC-CHHHHHHHHCCCCC
T ss_conf 74489998789-----88799889469722-335886589999999998399842--44763058-25677776422554
Q ss_pred EEEEEHHH---HCCCCCEEEECCCC-CCCCCEEEEEECCC-CCCCHHHHHHHHHHHHH
Q ss_conf 23311777---60199846617766-67660089993487-78888999999999999
Q gi|254780282|r 241 IALLPDYI---VKDNPNLVRIMEDV-ITPSFTVYFCYPEA-LKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 241 ia~lp~~~---~~~~~~lv~i~~~~-~~~~~~~~lv~~~~-~~~~~~~~~f~d~l~~~ 293 (299)
.+++++.. +...+....+.... ..+...++++..+- ..++..+++|+..+.+.
T Consensus 155 a~~~~ep~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~v~~fl~a~~~a 212 (308)
T 2x26_A 155 AWAIWDPYYSAALLQGGVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEA 212 (308)
T ss_dssp EEEEETTHHHHHHHHSSEEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHCCCCEEEEECCCCCCCCEEEEECHHHHHHCHHHHHHHHHHHHHH
T ss_conf 8996361699999759948997356568774489961688887969999999999999
No 177
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482}
Probab=83.93 E-value=1.4 Score=21.44 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHC---CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCC
Q ss_conf 999999999827---689999882899789999999999995882179769946850013433222
Q gi|254780282|r 7 KLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 (299)
Q Consensus 7 ~L~~f~~v~~~g---s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~ 69 (299)
+|..|-.+.+.+ |...=|+++++++..+.+-++-|.. +| ++.+.+.++.+|+.++.++..
T Consensus 37 ~lgifd~L~~~~~~~t~~eLa~~~g~~~~~l~rlL~~L~~-~g--~l~~~~~~y~lt~~s~~l~~~ 99 (363)
T 3dp7_A 37 KFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLT-IG--TILLEEDRYVLAKAGWFLLND 99 (363)
T ss_dssp HTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHH-HT--SEEEETTEEEECHHHHHHHHC
T ss_pred HCCHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH-CC--EEEEECCCEEECHHHHHHHCC
T ss_conf 8797889741899989999998879099999999999985-89--189859928778889988079
No 178
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=82.65 E-value=0.32 Score=25.20 Aligned_cols=110 Identities=10% Similarity=0.096 Sum_probs=50.3
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH-HCCCCCCCCCCCCCC
Q ss_conf 6899998828997899999999999958821797699468500134332222222222101221-001223222222333
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI-ELQESSVKPSGKLRI 97 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~-~~~~~~~~~~g~i~I 97 (299)
++..-|+++|||.+|||+.|.. .+++.+ ..-+++.++.+++.-.-+ ..+..+.+.++.|-+
T Consensus 6 Ti~dIA~~aGVS~~TVSraLn~-------------~~~Vs~-----~tr~rI~~~a~~lgY~pn~~ar~l~~~~~~~I~~ 67 (339)
T 3h5o_A 6 TMHDVAKAAGVSAITVSRVLNQ-------------PQQVSE-----QLREKVMQAVDALAYVPSRSASTLASAKSRTVLV 67 (339)
T ss_dssp ---------------------------------------------------------------------------CEEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHCC-------------CCCCCH-----HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEE
T ss_conf 1999999989799999999689-------------899999-----9999999999997897588888763177708999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCC--CCC----CC----CCCCCCCCCCCCCCC
Q ss_conf 211100000000013566754200012222--222----22----222222222223456
Q gi|254780282|r 98 ATTIDLGQNLLQGNLKEFLLLYPDIQIQLI--LDN----KD----IDISMDYADCAIRLR 147 (299)
Q Consensus 98 ~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~--~~~----~~----~~l~~~~~Di~i~~~ 147 (299)
-. +.....+...++..+.+........+. ..+ .. ..+....+|.+|.+.
T Consensus 68 ~~-~~~~~~f~~~l~~~i~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~Ii~~ 126 (339)
T 3h5o_A 68 LI-PSLANTVFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITG 126 (339)
T ss_dssp EE-SCSTTCTTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred EE-CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 95-565550499999999999997699899982578778889999999952887157520
No 179
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=81.88 E-value=1 Score=22.29 Aligned_cols=33 Identities=3% Similarity=-0.005 Sum_probs=22.5
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHH-HHHHC
Q ss_conf 7660089993487788889999999999-99850
Q gi|254780282|r 264 TPSFTVYFCYPEALKNTGKLKAFRNFIF-LKARD 296 (299)
Q Consensus 264 ~~~~~~~lv~~~~~~~~~~~~~f~d~l~-~~~r~ 296 (299)
..+....++.++....++.+++|++.+. +++.+
T Consensus 197 ~~~~~~~~v~r~~~~n~e~v~k~v~A~~~~ev~~ 230 (237)
T 3k2d_A 197 ESPYVNLIVARQDNVQNENVQNFVKAYQTEEVYT 230 (237)
T ss_dssp SSSCCEEEEEETTTTTSHHHHHHHHHHTSHHHHH
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHCCHHHHH
T ss_conf 9873699998650019899999999978999999
No 180
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102}
Probab=81.58 E-value=1.5 Score=21.29 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=49.4
Q ss_pred HHHHHHHHHHH-CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCC
Q ss_conf 99999999982-768999988289978999999999999588217976994685001343322222
Q gi|254780282|r 7 KLRVFYVVARS-GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTS 71 (299)
Q Consensus 7 ~L~~f~~v~~~-gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~ 71 (299)
.|..|-.+.+. .+...-|+++++.+..+++-++.|.. +| |+.|.+.++.+|+.++.++....
T Consensus 28 elglfd~L~~g~~t~~eLA~~~g~~~~~l~~lL~~L~~-~g--ll~~~~~~y~lt~~~~~~l~~~~ 90 (335)
T 2r3s_A 28 ELNVFTAISQGIESSQSLAQKCQTSERGMRMLCDYLVI-IG--FMTKQAEGYRLTSDSAMFLDRQS 90 (335)
T ss_dssp HTTHHHHHTTSEECHHHHHHHHTCCHHHHHHHHHHHHH-TT--SEEEETTEEEECHHHHHHTCTTS
T ss_pred HCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH-CC--CEEEECCEEEECHHHHHHHCCCC
T ss_conf 87998998579999999997719799999999999987-89--23873785651687897724897
No 181
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=80.67 E-value=0.4 Score=24.62 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.3
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 6899998828997899999999
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISG 40 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~ 40 (299)
++.-=|+++|||++|||+.|+.
T Consensus 12 TikdIA~~agVS~aTVSr~Ln~ 33 (344)
T 3kjx_A 12 TLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp CHHHHHHHHCCCSHHHHHHHTT
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
T ss_conf 6999999989599999999789
No 182
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, S-adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum tls} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=80.29 E-value=2.4 Score=20.07 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=48.9
Q ss_pred HHHHHHHHHH-HCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCC
Q ss_conf 9999999998-27689999882899789999999999995882179769946850013433222
Q gi|254780282|r 7 KLRVFYVVAR-SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 (299)
Q Consensus 7 ~L~~f~~v~~-~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~ 69 (299)
+|..|-.+++ -.|...-|+++++.++.+.+-++-|.. +| +|.+.+.++.+|+.++.+...
T Consensus 53 eLglfd~L~~gp~T~~eLA~~~g~~~~~l~rlL~~L~~-~G--ll~~~~~~~~~t~~s~~l~~~ 113 (359)
T 1x19_A 53 ELDLFSHMAEGPKDLATLAADTGSVPPRLEMLLETLRQ-MR--VINLEDGKWSLTEFADYMFSP 113 (359)
T ss_dssp HHTHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHH-TT--SEEEETTEEEECHHHHHHSSS
T ss_pred HCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH-CC--CEEEECCEEECCHHHHHHHCC
T ss_conf 86998997479999999999979099999999999997-79--589749978538889998278
No 183
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A
Probab=80.19 E-value=0.88 Score=22.63 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=49.1
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCC--CEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 6899998828997899999999999958821797699--46850013433222222222210
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR--GLTLTEQGSKLHRVTSEVYHKLE 78 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~--~~~lT~~G~~l~~~a~~~l~~~~ 78 (299)
=.+-=|++-+-|-+-+++-|+.+|+ .|.-=|...|| -+.||+.|+.+.+..+.+...++
T Consensus 32 Y~s~iaKeidstysh~~kiL~~mE~-~gLV~fe~eGRiK~I~LT~kG~~va~~l~~i~~~l~ 92 (95)
T 2qvo_A 32 YIQYIASKVNSPHSYVWLIIKKFEE-AKMVECELEGRTKIIRLTDKGQKIAQQIKSIIDIME 92 (95)
T ss_dssp EHHHHHHHSSSCHHHHHHHHHHHHH-TTSEEEEEETTEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHH-CCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 9999999809937999999999997-797687616837898757665999999999999973
No 184
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginosa PA01,structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=80.17 E-value=2.6 Score=19.90 Aligned_cols=187 Identities=12% Similarity=0.038 Sum_probs=80.7
Q ss_pred CCCCCCCCCCCCCCC-----------CCCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCC---C
Q ss_conf 222233321110000-----------0000013566754200012222222---2222222222222345654321---1
Q gi|254780282|r 91 PSGKLRIATTIDLGQ-----------NLLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIRLRKPIQS---S 153 (299)
Q Consensus 91 ~~g~i~I~~~~~~~~-----------~~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~~~~~~~~---~ 153 (299)
.+|.|+||+.....+ .+..+++..+.+. .++++++...+ ....+..|++|+++......+. .
T Consensus 13 ~~g~l~V~~~~~~pP~~~~~~~g~~~G~~vdl~~~i~~~-~g~~~~~~~~~~~~~~~~~~~g~~d~~~~~~~~t~~~~~~ 91 (239)
T 3kbr_A 13 ESGVLRVATTGDYKPFSYRTEEGGYAGFDVDMAQRLAES-LGAKLVVVPTSWPNLMRDFADDRFDIAMSGISINLERQRQ 91 (239)
T ss_dssp HHTEEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHH-TTCEEEEEECCTTTHHHHHHTTCCSEECSSCBCCHHHHTT
T ss_pred CCCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 399899998789899148999998877079999999886-4971378853668889999859965223336689777432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHH
Q ss_conf 11223455543321123443211122222211000112-35664332110002356652022343212114532420013
Q gi|254780282|r 154 SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNL-ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 (299)
Q Consensus 154 ~l~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 232 (299)
-....+.+......+.-.. ......+.+++..... +..... .....+..... +......+++...++
T Consensus 92 ~~~s~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~g----~~~~~~~~~~~-----~~~~i~~~~~~~~~l 159 (239)
T 3kbr_A 92 AYFSIPYLRDGKTPITLCS---EEARFQTLEQIDQPGVTAIVNPG----GTNEKFARANL-----KKARILVHPDNVTIF 159 (239)
T ss_dssp CEECSCSEEECEEEEEEGG---GGGGGSSHHHHSSTTCEEEECTT----SHHHHHHHHHC-----SSSEEEECCCTTTHH
T ss_pred CCCCCCEEECCCEEEEEEC---CCCCCCCHHHHHCCCCEEEECCC----CHHHHHHHHCC-----CCCEEEEECCHHHHH
T ss_conf 2567434642521355202---56765652444336870576567----53999998708-----763453302327676
Q ss_pred HHHHHHCCEEEE-EHHH----HCCCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 567873842331-1777----6019984661776667660089993487788889999999999998
Q gi|254780282|r 233 QYCVLGSGIALL-PDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 (299)
Q Consensus 233 ~~v~~g~Gia~l-p~~~----~~~~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~ 294 (299)
.++..|..=+++ +... .+..+++..+.+..+.....++++.+++ +.....++-.++++
T Consensus 160 ~~L~~grvD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~in~~l~~l 222 (239)
T 3kbr_A 160 QQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPRD----EAFKRYVDQWLHIA 222 (239)
T ss_dssp HHHHTTSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEECCEECSC----HHHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEEECHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCC----HHHHHHHHHHHHHH
T ss_conf 7863698319995489999999978996389621577753089997699----99999999999999
No 185
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=79.21 E-value=2.8 Score=19.72 Aligned_cols=44 Identities=18% Similarity=0.366 Sum_probs=31.7
Q ss_pred CC-CCHHHHHHHHHH----HHHC---CHHHHHHHHCC-CHHHHHHHHHHHHHH
Q ss_conf 98-888999999999----9827---68999988289-978999999999999
Q gi|254780282|r 1 MS-FDWDKLRVFYVV----ARSG---SFTHAAEQLHL-SQSSISRQISGLETE 44 (299)
Q Consensus 1 m~-md~~~L~~f~~v----~~~g---s~s~AA~~L~i-tq~avS~~i~~LE~~ 44 (299)
|. |+-+|-+++..+ .++| |++.=|+.+++ |+++|+++++.||+.
T Consensus 1 M~~LT~kq~~il~~I~~~~~~~g~~PS~~Eia~~~GikS~s~v~~~l~~L~~~ 53 (202)
T 1jhf_A 1 MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARK 53 (202)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 97459999999999999999829896699999984999728999999988763
No 186
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=79.18 E-value=2.8 Score=19.71 Aligned_cols=60 Identities=13% Similarity=0.059 Sum_probs=38.5
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCE-EEEECCCCEEEEECCCCCC
Q ss_conf 99999999827689999882899789999999999995882-1797699468500134332
Q gi|254780282|r 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIK-LFYRHARGLTLTEQGSKLH 67 (299)
Q Consensus 8 L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~-Lf~R~~~~~~lT~~G~~l~ 67 (299)
.++...+.+-.|...+|++++||+++|++-+++..+.=... --.+.+++-.+|++-..++
T Consensus 39 ~rIV~~~~~G~s~r~IArrf~VS~stV~kii~r~retG~~~p~~~gg~rp~~~t~~~~~~I 99 (149)
T 1k78_A 39 QRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKI 99 (149)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 9999999969999999998894999999999999981888888778989986799999999
No 187
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=78.22 E-value=1.7 Score=21.00 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=9.1
Q ss_pred HCCEEEEECCCCEEEEECCCC
Q ss_conf 588217976994685001343
Q gi|254780282|r 45 VGIKLFYRHARGLTLTEQGSK 65 (299)
Q Consensus 45 lg~~Lf~R~~~~~~lT~~G~~ 65 (299)
....-+..-.+|-.+...|+.
T Consensus 31 ~~~~~~~~~~kge~i~~~g~~ 51 (237)
T 3fx3_A 31 LSQAVWRSYDRGETLFLQEEK 51 (237)
T ss_dssp HTTCEEEEECTTCEEECTTSC
T ss_pred HHCCEEEEECCCCEEEECCCC
T ss_conf 963899998999999949973
No 188
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=78.17 E-value=2.3 Score=20.17 Aligned_cols=37 Identities=14% Similarity=0.177 Sum_probs=27.9
Q ss_pred HHHHHH-HHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 999999-9827689999882899789999999999995
Q gi|254780282|r 9 RVFYVV-ARSGSFTHAAEQLHLSQSSISRQISGLETEV 45 (299)
Q Consensus 9 ~~f~~v-~~~gs~s~AA~~L~itq~avS~~i~~LE~~l 45 (299)
.+|... .+.-|++..|+.|++|.+||..++++-.+.|
T Consensus 32 ~v~~l~~~e~ls~~EIA~~lgiS~~aV~~~l~RA~~~L 69 (113)
T 1xsv_A 32 NYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp HHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999199999999998969999999999999999
No 189
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp}
Probab=77.68 E-value=3.1 Score=19.44 Aligned_cols=141 Identities=9% Similarity=-0.088 Sum_probs=70.4
Q ss_pred CCCCCCCCCCCCCCC------------CCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCC-CC-CCCCCCC
Q ss_conf 222333211100000------------000013566754200012222222---222222222222234-56-5432111
Q gi|254780282|r 92 SGKLRIATTIDLGQN------------LLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIR-LR-KPIQSSS 154 (299)
Q Consensus 92 ~g~i~I~~~~~~~~~------------~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~-~~-~~~~~~~ 154 (299)
++.|+||+.+...++ +..+++..+.+.. ++++++...+ ....+..|++|+++. +. .+...+.
T Consensus 2 s~~l~vg~~~~~pP~~~~~~~~g~~~G~~~dl~~~ia~~~-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~ 80 (237)
T 3kzg_A 2 SLNLTIGTSKFNPPFEVWSGNNSSLYGFDIDLMQEICRRL-HATCTFEAYIFDDLFPALKNREVDLVIASMIITDERKKH 80 (237)
T ss_dssp CCEEEEEEESEETTTEECCCTTSCCBSHHHHHHHHHHHHT-TCEEEEEEECGGGHHHHHHTTSSSEECSSCBCCTTGGGT
T ss_pred CCCEEEEECCCCCCCEEEECCCCCEEEEHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHCCCCCEEECCCCCCHHHHHC
T ss_conf 8758999899989836898999928873999999999996-997599977999999999869987772136799789730
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHH
Q ss_conf 12-23455543321123443211122222211000112356643321100023566520223432121145324200135
Q gi|254780282|r 155 LI-QRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 (299)
Q Consensus 155 l~-~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 233 (299)
+. ..+++.....+++.++. ...++++|.+..+.. ..+.. ...++.... +......+++.+.++.
T Consensus 81 ~~fs~py~~~~~~~~~~~~~-----~~~~~~~l~g~~i~~-~~g~~----~~~~~~~~~-----~~~~i~~~~~~~~~~~ 145 (237)
T 3kzg_A 81 FIFSLPYMESNSQYITTVDS-----KISTFDDLHGKKIGV-RKGTP----YARQVLSEN-----RNNQVIFYELIQDMLL 145 (237)
T ss_dssp CEECCCSBCCEEEEEEETTC-----SCCSGGGGTTCEEEE-ETTST----HHHHHHHTC-----SSCEEEEESSHHHHHH
T ss_pred CCCCCCEEECCCEEEECCCC-----CCCCHHHHCCCCCEE-ECCCH----HHHHHHHHC-----CCCEEECCCCHHHHHH
T ss_conf 20467434034012331555-----568988976982143-25868----999998734-----5640112588899888
Q ss_pred HHHHHCCEE-EEEHHH
Q ss_conf 678738423-311777
Q gi|254780282|r 234 YCVLGSGIA-LLPDYI 248 (299)
Q Consensus 234 ~v~~g~Gia-~lp~~~ 248 (299)
++..|..=+ +.....
T Consensus 146 ~l~~GrvD~~i~~~~~ 161 (237)
T 3kzg_A 146 GLSNNQVDASLMDYEA 161 (237)
T ss_dssp HHHTTSSSEEEEEHHH
T ss_pred HHHCCCEEEEEECHHH
T ss_conf 9865965799965999
No 190
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=77.50 E-value=2.7 Score=19.81 Aligned_cols=194 Identities=7% Similarity=-0.123 Sum_probs=82.5
Q ss_pred CCCCCCCCCCCCCCCC-----------CCCCCHHHHHHHHHHCCCCCCCCC--------------------CCCCCCCCC
Q ss_conf 2222233321110000-----------000001356675420001222222--------------------222222222
Q gi|254780282|r 90 KPSGKLRIATTIDLGQ-----------NLLQGNLKEFLLLYPDIQIQLILD--------------------NKDIDISMD 138 (299)
Q Consensus 90 ~~~g~i~I~~~~~~~~-----------~~l~~~l~~f~~~~P~i~i~i~~~--------------------~~~~~l~~~ 138 (299)
..++.+++|+..+... .+-.+++..+.+.- ++++++... .....+..|
T Consensus 38 ~~~~~~~~~~~~~~~p~~~~~~~g~~~G~~vDl~~~ia~~l-g~~~e~~~~~~~~~g~~~~~~~~~~~~w~~~~~~l~~g 116 (292)
T 1pb7_A 38 PVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTM-NFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSG 116 (292)
T ss_dssp BCCCEEEEEEC--------CEEEEEEESHHHHHHHHHHHHH-TCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHH-CCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 45742895116888863312799976998499999999983-99479998667654543334655668888999998679
Q ss_pred CCCCCCCCCCCC--CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC-C
Q ss_conf 222223456543--21111-2234555433211234432111222222110001123566433211000235665202-2
Q gi|254780282|r 139 YADCAIRLRKPI--QSSSL-IQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR-P 214 (299)
Q Consensus 139 ~~Di~i~~~~~~--~~~~l-~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~-~ 214 (299)
++|+++...... ....+ ...+++....++++.++..... .+..++.+.. ...............++..... .
T Consensus 117 ~~Di~~~~~~~t~eR~~~~~Fs~Py~~~~~~~~v~~~~~~~~---~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~ 192 (292)
T 1pb7_A 117 QADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRITG---INDPRLRNPS-DKFIYATVKQSSVDIYFRRQVELS 192 (292)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTCCCCS---TTCHHHHSCB-TTBCEECBTTSHHHHHHHTCGGGH
T ss_pred CEEEEEECCCCCHHHHHHCCCCCEECCCCEEEEEECCCCCCC---CCHHHCCCCC-CCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 767998668799899942666510124776899986886564---5303306863-326997866479999998646665
Q ss_pred CCCCCCCEEEECCCCHHHHHHHHHCCEEEEEH-----HHHCCCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 34321211453242001356787384233117-----7760199846617766676600899934877888899999999
Q gi|254780282|r 215 IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD-----YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 (299)
Q Consensus 215 ~~~~~~~~~~~~s~~~~~~~v~~g~Gia~lp~-----~~~~~~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~ 289 (299)
...+......+++...++.++..|..-+++-. +.+...++++.+.+ +....++++..+|+..+...+..++.-
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~g~~da~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~k~~~l~~~in~al~~ 270 (292)
T 1pb7_A 193 TMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGE--LFFRSGFGIGMRKDSPWKQNVSLSILK 270 (292)
T ss_dssp HHHHHHTTTCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECSS--CSEEEEECCEEETTCSSHHHHHHHHHH
T ss_pred HCCCCCEEEEECCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCEEEECC--CCCCCEEEEEEECCHHHHHHHHHHHHH
T ss_conf 306774699828899999998779735996258999999986898799377--666612899990875999999999999
Q ss_pred H
Q ss_conf 9
Q gi|254780282|r 290 I 290 (299)
Q Consensus 290 l 290 (299)
+
T Consensus 271 l 271 (292)
T 1pb7_A 271 S 271 (292)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 191
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=77.36 E-value=3.2 Score=19.39 Aligned_cols=57 Identities=12% Similarity=0.005 Sum_probs=36.4
Q ss_pred HHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-CCEEEEECCCCCCCC
Q ss_conf 999827689999882899789999999999995882179769-946850013433222
Q gi|254780282|r 13 VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-RGLTLTEQGSKLHRV 69 (299)
Q Consensus 13 ~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~ 69 (299)
....--+....|++|+||+++||+-|++.++.=...-=-+.| +.=..|++....+..
T Consensus 29 l~~~G~s~~~Iar~l~Vs~~~V~kil~r~~etG~i~p~~~gG~rpr~~t~~~~~~I~~ 86 (128)
T 1pdn_C 29 MAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEE 86 (128)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9986999999999889689999999999873598777888999998799999999999
No 192
>2p8t_A Hypothetical protein PH0730; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.80A {Pyrococcus horikoshii OT3} SCOP: a.4.5.72 d.74.4.2
Probab=77.10 E-value=1.6 Score=21.07 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=44.1
Q ss_pred HHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 827689999882899789999999999995882179769946850013433222222222210
Q gi|254780282|r 16 RSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78 (299)
Q Consensus 16 ~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~ 78 (299)
+--+=..=|+.|++|--.|-..+..|.+. .|+.-+..|+.+|+.|+.+++....++...-
T Consensus 29 qPiGRr~La~~L~l~Er~vRt~~~~Lk~~---gLI~~~~~G~~lT~~G~~~l~~l~~~~~~~~ 88 (200)
T 2p8t_A 29 EPLGRKQISERLELGEGSVRTLLRKLSHL---DIIRSKQRGHFLTLKGKEIRDKLLSMFSEPI 88 (200)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEEC--CEEECHHHHHHHHHHHTTBCCCE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCEEECCCCEEECHHHHHHHHHHHHHHHHHH
T ss_conf 98668999998397389999999999768---9589538842885739999999999988873
No 193
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} SCOP: a.35.1.13
Probab=76.94 E-value=1.2 Score=21.81 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=14.8
Q ss_pred CHHHHHHHHCCCHHHHHHHHH
Q ss_conf 689999882899789999999
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQIS 39 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~ 39 (299)
+=..||+.|+++||.||+-.+
T Consensus 55 TQ~eaA~~lGisq~~iS~l~~ 75 (120)
T 2o38_A 55 SQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp CHHHHHHHHTCCHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHC
T ss_conf 675565550888899899975
No 194
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=74.86 E-value=3.7 Score=18.99 Aligned_cols=42 Identities=7% Similarity=0.096 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHC---CHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8889999999999827---68999988289978999999999999
Q gi|254780282|r 3 FDWDKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 3 md~~~L~~f~~v~~~g---s~s~AA~~L~itq~avS~~i~~LE~~ 44 (299)
+++.+-.-.+.-++.| +.+.+|+..+|++++|++.+++=++.
T Consensus 8 ~t~~~K~~vi~~~~~~~~~~~~~iAk~fgv~~sTi~~~~k~k~~~ 52 (131)
T 1hlv_A 8 LTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 899999999999997788889999999891999999999247999
No 195
>1ii5_A Hypothetical protein SLR1257; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=74.61 E-value=3.8 Score=18.96 Aligned_cols=166 Identities=8% Similarity=0.017 Sum_probs=80.5
Q ss_pred CCCHHHHHHHHHHCCCCCCC-CCC---CCCCCCCCCCCCCCC-CCCCCCC---CCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00013566754200012222-222---222222222222234-5654321---1112-2345554332112344321112
Q gi|254780282|r 108 LQGNLKEFLLLYPDIQIQLI-LDN---KDIDISMDYADCAIR-LRKPIQS---SSLI-QRKLVTIHMHAYAAPHYLKNCR 178 (299)
Q Consensus 108 l~~~l~~f~~~~P~i~i~i~-~~~---~~~~l~~~~~Di~i~-~~~~~~~---~~l~-~~~l~~~~~~~v~~~~~~~~~~ 178 (299)
..+++..+.++. ++++++. ..+ ....+..|++|+++. +...... ..+. ..+++....+++..++. ..
T Consensus 31 ~vdl~~~ia~~~-g~~~~~v~~~~~~~~~~~l~~g~~Di~~~~~~~t~eR~~~~~~~fs~p~~~~~~~~~~~~~~---~~ 106 (233)
T 1ii5_A 31 SLDVWRAVAESQ-KWNSEYVRQNSISAGITAVAEGELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTA---TP 106 (233)
T ss_dssp HHHHHHHHHHHH-TCCEEEEECSCHHHHHHHHHTTSCSEEEEEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGG---TT
T ss_pred HHHHHHHHHHHH-CCCEEEEECCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECC---CC
T ss_conf 999999999983-99749995699999999998699876741156886776443023467742257336885112---22
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCEE-EEEHHHH----CCCC
Q ss_conf 2222211000112356643321100023566520223432121145324200135678738423-3117776----0199
Q gi|254780282|r 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA-LLPDYIV----KDNP 253 (299)
Q Consensus 179 ~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gia-~lp~~~~----~~~~ 253 (299)
...+++||.+..+.... +. ....+... +......+++...++.++..|..=+ +.+...+ .+.+
T Consensus 107 ~~~~~~dl~g~~i~~~~-g~----~~~~~~~~-------~~~~i~~~~~~~~~~~~l~~grvD~~v~~~~~~~~~~~~~~ 174 (233)
T 1ii5_A 107 LFRSVGDLKNKEVAVVR-DT----TAVDWANF-------YQADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNP 174 (233)
T ss_dssp TCSSGGGGTTCEEEEET-TS----HHHHHHHH-------TTCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCG
T ss_pred CCCCHHHHHHHHCCCCC-CC----HHHHHHHC-------CCCCCCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHCC
T ss_conf 45668887542305568-86----89999855-------36642135747999999865917999786999999999689
Q ss_pred CE-EEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 84-66177666766008999348778888999999999
Q gi|254780282|r 254 NL-VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 (299)
Q Consensus 254 ~l-v~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l 290 (299)
.+ ..+... +.....++++.+++..+...+...++-|
T Consensus 175 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~in~~l~~~ 211 (233)
T 1ii5_A 175 NLNLEVTEI-RVSLEPYGFVLKENSPLQKTINVEMLNL 211 (233)
T ss_dssp GGCEEECSC-CSEEEEEEEEEETTCTTHHHHHHHHHHH
T ss_pred CCCEEECCC-CCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 997642456-7877349999789979999999999999
No 196
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis}
Probab=74.12 E-value=0.48 Score=24.13 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 6899998828997899999999
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISG 40 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~ 40 (299)
++.-=|++.|||++|||+.+..
T Consensus 7 Ti~DIA~~aGVS~~TVSraLn~ 28 (332)
T 2o20_A 7 TIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
T ss_conf 6999999979799999999689
No 197
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=73.76 E-value=2.4 Score=20.07 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=26.3
Q ss_pred HHHHHHHHCCHHHH--HHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999982768999--988289978999999999999
Q gi|254780282|r 10 VFYVVARSGSFTHA--AEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 10 ~f~~v~~~gs~s~A--A~~L~itq~avS~~i~~LE~~ 44 (299)
.+..+. +|.+||+ |+.+++|+||||+.+++|.++
T Consensus 25 il~~l~-~gpiSR~eLa~~tgLS~~Tvs~iv~~L~~~ 60 (380)
T 2hoe_A 25 ILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEK 60 (380)
T ss_dssp SHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 999998-099599999988895999999999999988
No 198
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=73.06 E-value=4.1 Score=18.73 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHHCCCCCCCCC
Q ss_conf 001356675420001222222
Q gi|254780282|r 109 QGNLKEFLLLYPDIQIQLILD 129 (299)
Q Consensus 109 ~~~l~~f~~~~P~i~i~i~~~ 129 (299)
...+..+++.+|++.+=+.++
T Consensus 64 ~~~l~~i~~~~~~~~iI~lt~ 84 (208)
T 1yio_A 64 IELQEQLTAISDGIPIVFITA 84 (208)
T ss_dssp HHHHHHHHHTTCCCCEEEEES
T ss_pred HHHHHHHHHHCCCCEEEEEEC
T ss_conf 799999886056651798725
No 199
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=72.73 E-value=4.2 Score=18.69 Aligned_cols=12 Identities=25% Similarity=0.337 Sum_probs=6.4
Q ss_pred EEEECCCCCCCC
Q ss_conf 850013433222
Q gi|254780282|r 58 TLTEQGSKLHRV 69 (299)
Q Consensus 58 ~lT~~G~~l~~~ 69 (299)
.||-+|..|+..
T Consensus 223 ~~T~AglLlfg~ 234 (583)
T 3lmm_A 223 FLSQAGKLLFTS 234 (583)
T ss_dssp EEEHHHHHHHSC
T ss_pred CCCHHHHHHHCC
T ss_conf 668999986132
No 200
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=72.37 E-value=0.55 Score=23.79 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.7
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 6899998828997899999999
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISG 40 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~ 40 (299)
++.-=|++.|||++|||+.|..
T Consensus 10 Ti~dIA~~aGVS~~TVSr~Ln~ 31 (348)
T 3bil_A 10 TLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
T ss_conf 3999999988699999999689
No 201
>1i3j_A I-TEVI, intron-associated endonuclease 1; protein-DNA complex, extended structure, Zn-finger, minor groove helix, helix-turn-helix; 2.20A {Enterobacteria phage T4} SCOP: d.285.1.1 PDB: 1t2t_A
Probab=71.64 E-value=2.8 Score=19.70 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=11.4
Q ss_pred HCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 27689999882899789999999
Q gi|254780282|r 17 SGSFTHAAEQLHLSQSSISRQIS 39 (299)
Q Consensus 17 ~gs~s~AA~~L~itq~avS~~i~ 39 (299)
..|++.||+.|+++.++|..+|+
T Consensus 83 Y~S~~EAAr~Lgis~~TI~~RiK 105 (116)
T 1i3j_A 83 FDCAADAARHFKISSGLVTYRVK 105 (116)
T ss_dssp ESSHHHHHHHHTCCHHHHHHHHH
T ss_pred ECCHHHHHHHHCCCHHHHHHHHH
T ss_conf 62899999996898377899870
No 202
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding protein; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi}
Probab=70.28 E-value=4.8 Score=18.36 Aligned_cols=174 Identities=11% Similarity=0.068 Sum_probs=76.2
Q ss_pred CCCCCCCCCCCC-----------CCCCCHHHHHHHHHHCCCCCCCCC---CCCCCCCCCCCCCCCCC-CCC-CCCCCC-C
Q ss_conf 233321110000-----------000001356675420001222222---22222222222222345-654-321111-2
Q gi|254780282|r 94 KLRIATTIDLGQ-----------NLLQGNLKEFLLLYPDIQIQLILD---NKDIDISMDYADCAIRL-RKP-IQSSSL-I 156 (299)
Q Consensus 94 ~i~I~~~~~~~~-----------~~l~~~l~~f~~~~P~i~i~i~~~---~~~~~l~~~~~Di~i~~-~~~-~~~~~l-~ 156 (299)
+||||+...+.+ .+..+++..+.++. ++++++... +....|..|++|+++.. ... .....+ .
T Consensus 6 tlrVg~~~~~pP~~~~d~~g~~~G~~vDl~~~ia~~l-g~~~~~~~~~~~~~~~~l~~g~~D~i~~~~~~t~er~~~~~~ 84 (232)
T 3i6v_A 6 TVRMGTEGAYPPYNFINDAGEVDGFERELGDELCKRA-GLTCEWVKNDWDSIIPNLVSGNYDTIIAGMSITDERDEVIDF 84 (232)
T ss_dssp CEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHHH-TCCEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTTSEE
T ss_pred EEEEEECCCCCCEEEECCCCCEEEHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCHHHHHCCCE
T ss_conf 5999987997993699999978775999999999984-996799976748899998679977999778689789831414
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHH
Q ss_conf 23455543321123443211122222211000112356643321100023566520223432121145324200135678
Q gi|254780282|r 157 QRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 (299)
Q Consensus 157 ~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~ 236 (299)
..+++.....+++.++ +..||...-... .. . ....... .+.....++++...++.++.
T Consensus 85 s~p~~~~~~~~~~~~~---------~~~dl~~~~~~~--~~---~-~~~~~~~-------~~~~~~~~~~~~~~~~~~L~ 142 (232)
T 3i6v_A 85 TQNYIPPTASSYVATS---------DGADLSGIVAAQ--TA---T-IQAGYIA-------ESGATLVEFATPEETIAAVR 142 (232)
T ss_dssp EEEEECCCEEEEEESS---------TTCCTTSEEEEE--TT---S-HHHHHHH-------HSSSEEEEESSHHHHHHHHH
T ss_pred ECCEECCCCEEEEECC---------CHHHHCCCCCEE--EC---C-HHHHHHH-------CCCCEEEEECCHHHHHHHHH
T ss_conf 0321026615899838---------868807860204--25---3-1777763-------56845899699899999997
Q ss_pred HHCCEEEE-EHH----HHCCCC-CEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 73842331-177----760199-84661776667660089993487788889999999999998
Q gi|254780282|r 237 LGSGIALL-PDY----IVKDNP-NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 (299)
Q Consensus 237 ~g~Gia~l-p~~----~~~~~~-~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~ 294 (299)
.|..-+++ ... ..++.+ ....+... ......+++..+++ ++.....++..+.++
T Consensus 143 ~grvD~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~---~~~L~~~in~~l~~l 202 (232)
T 3i6v_A 143 NGEADAVFADRDYLVPIVAESGGELMFVGDD-VPLGGGVGMGLRES---DGELRGKFDAAITSM 202 (232)
T ss_dssp TTSSSEEEEEHHHHHHHHHHTTTSSEEEEEE-EECSSCEEEEECTT---CHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECHHHHHHHHHHCCCCEEEECCC-CCCCCEEEEEECCC---CHHHHHHHHHHHHHH
T ss_conf 6995099972899999998669971993267-77664179998089---999999999999999
No 203
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=69.10 E-value=4.8 Score=18.37 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=48.4
Q ss_pred HHHHHHHHHH-HCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCC
Q ss_conf 9999999998-276899998828997899999999999958821797699468500134332222
Q gi|254780282|r 7 KLRVFYVVAR-SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 (299)
Q Consensus 7 ~L~~f~~v~~-~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a 70 (299)
+|..|-.+.+ -.|...=|+++++.+..+.+-++-|.. +| +|.+....+.+|+.++.++...
T Consensus 44 eLglfd~L~~gp~t~~eLA~~~g~~~~~l~rlLr~L~~-~G--ll~~~~g~y~~t~~s~~l~~~~ 105 (348)
T 3lst_A 44 AVGVADHLVDGPRTPAELAAATGTDADALRRVLRLLAV-RD--VVRESDGRFALTDKGAALRSDS 105 (348)
T ss_dssp HHTGGGGGTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH-TT--SEEEETTEEEECTTTGGGSTTS
T ss_pred HCCHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH-CC--CEEEECCEEECCHHHHHHHCCC
T ss_conf 88962897189989999998879098999999999997-89--8894298563378888873489
No 204
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=68.84 E-value=5.2 Score=18.18 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC-CCC---CCCCCCCCCCCCC
Q ss_conf 2223332111000000000135667542000122222-222---2222222222223
Q gi|254780282|r 92 SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL-DNK---DIDISMDYADCAI 144 (299)
Q Consensus 92 ~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~-~~~---~~~l~~~~~Di~i 144 (299)
..+|+||.+++-.. +...+....+++ ++++++.. ++. ...|..|++|+++
T Consensus 38 ~k~i~IG~~~~~~~--~~~~~~~~~kk~-Gl~Ve~~~F~d~~~~~~AL~~G~ID~~~ 91 (295)
T 1p99_A 38 DKKVTIGVASNDTK--AWEKVKELAKKD-DIDVEIKHFSDYNLPNKALNDGDIDMNA 91 (295)
T ss_dssp --CEEEEESSSCCH--HHHHHHHHHGGG-TCCEEEEECSSTTSHHHHHHTTSSSEEE
T ss_pred CCEEEEEECCCCHH--HHHHHHHHHHHC-CCEEEEEEECCCHHHHHHHHCCCCCEEE
T ss_conf 96499996798389--999999999975-9889999817827799999759967675
No 205
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A
Probab=68.25 E-value=1.3 Score=21.65 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=18.1
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 6899998828997899999999
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISG 40 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~ 40 (299)
++.-=|++.|||.+|||+.+..
T Consensus 4 Ti~dIA~~aGVS~~TVSr~Ln~ 25 (332)
T 2hsg_A 4 TIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CHHHHHHHTTSCHHHHHHHHTT
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
T ss_conf 7999999989799999999789
No 206
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli CFT073} SCOP: a.35.1.3 PDB: 2icp_A
Probab=68.20 E-value=5.3 Score=18.10 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=30.4
Q ss_pred CCCC-----HHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH-----------HHHHHHCCE
Q ss_conf 9888-----89999999999827689999882899789999999-----------999995882
Q gi|254780282|r 1 MSFD-----WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQIS-----------GLETEVGIK 48 (299)
Q Consensus 1 m~md-----~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~-----------~LE~~lg~~ 48 (299)
|+|. =+.|+-+. -..--|-+.-|+++|||+++||+-++ +|++.||++
T Consensus 1 m~~~~~~hPG~~Lk~~r-~~~gltq~~lA~~lgvs~~~is~~e~G~~~~s~~~~~~la~~lgvs 63 (94)
T 2ict_A 1 MKMANHPRPGDIIQESL-DELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSS 63 (94)
T ss_dssp CCCTTCCCHHHHHHHHH-HHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSC
T ss_pred CCCCCCCCHHHHHHHHH-HHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
T ss_conf 99999999899999999-9969999999998496389986987276447299999999999909
No 207
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=67.60 E-value=3.5 Score=19.18 Aligned_cols=60 Identities=13% Similarity=0.223 Sum_probs=46.6
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCC
Q ss_conf 999999982768999988289978999999999999588217976994685001343322222
Q gi|254780282|r 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTS 71 (299)
Q Consensus 9 ~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~ 71 (299)
+.|-.+.+-.+...=|+++++.+..+.+-++-|.. +| |+.|.+.++.+|+.++.++....
T Consensus 48 ~lfd~l~~~~t~~eLA~~~g~~~~~l~~lLr~L~a-~G--ll~~~~~~y~~t~~~~~~l~~~~ 107 (352)
T 3mcz_A 48 KLFDLTQTGRTPAEVAASFGMVEGKAAILLHALAA-LG--LLTKEGDAFRNTALTERYLTTTS 107 (352)
T ss_dssp THHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH-TT--SEEEETTEEEECHHHHHHHSTTC
T ss_pred CCCHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH-CC--CEEEECCEEECCHHHHHHHCCCC
T ss_conf 98323269999999998829898999999999986-89--28998999978888998851799
No 208
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transcription regulation; NMR {Escherichia coli K12} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=67.09 E-value=3.9 Score=18.87 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=18.4
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 6899998828997899999999
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISG 40 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~ 40 (299)
++..-|+.+|||++|||+.|..
T Consensus 2 TlkdIA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
T ss_conf 7999999988599999999859
No 209
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=66.19 E-value=5.5 Score=18.00 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHC-CHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8889999999999827-689999882899789999999
Q gi|254780282|r 3 FDWDKLRVFYVVARSG-SFTHAAEQLHLSQSSISRQIS 39 (299)
Q Consensus 3 md~~~L~~f~~v~~~g-s~s~AA~~L~itq~avS~~i~ 39 (299)
|+-++++....+.+.| +++..|+.++||.++|.+.+.
T Consensus 6 Lt~~q~~~a~~l~~~G~s~~~iA~~~gVsr~TlYrylp 43 (52)
T 1jko_C 6 INKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp SCTTHHHHHHHHHHTTCCHHHHHHTTSCCHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 99999999999999789899999997979999999851
No 210
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=64.82 E-value=6.2 Score=17.71 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=15.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 7689999882899789999999
Q gi|254780282|r 18 GSFTHAAEQLHLSQSSISRQIS 39 (299)
Q Consensus 18 gs~s~AA~~L~itq~avS~~i~ 39 (299)
-|-+..|+.+|||+++||+-++
T Consensus 25 isq~~LA~~lgvs~~~is~i~~ 46 (113)
T 2eby_A 25 LKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999996989999999993
No 211
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228}
Probab=64.21 E-value=6 Score=17.78 Aligned_cols=28 Identities=25% Similarity=0.140 Sum_probs=23.5
Q ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9982768999988289978999999999
Q gi|254780282|r 14 VARSGSFTHAAEQLHLSQSSISRQISGL 41 (299)
Q Consensus 14 v~~~gs~s~AA~~L~itq~avS~~i~~L 41 (299)
-+...|+..-|++.+||+|+|+|-.++|
T Consensus 32 ~i~~~si~elA~~~~VS~aTi~Rf~kkl 59 (107)
T 3iwf_A 32 KVVNMTSQEIANQLETSSTSIIRLSKKV 59 (107)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9977659999989798998999999995
No 212
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV}
Probab=62.77 E-value=6.8 Score=17.48 Aligned_cols=37 Identities=11% Similarity=0.036 Sum_probs=28.9
Q ss_pred HHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCE
Q ss_conf 9999827689999882899789999999999995882
Q gi|254780282|r 12 YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIK 48 (299)
Q Consensus 12 ~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~ 48 (299)
+.-.+.-|+...|+.|++|.++|..++.+--+.|...
T Consensus 26 l~~~~g~s~~EIA~~lgis~~tvk~~l~Ra~~~Lr~~ 62 (70)
T 2o8x_A 26 LTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp HHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8999099999999998979999999999999999998
No 213
>2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=62.22 E-value=7 Score=17.42 Aligned_cols=51 Identities=6% Similarity=-0.027 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHC-------CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 88889999999999827-------6899998828997899999999999958821797
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG-------SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR 52 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g-------s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R 52 (299)
+|+=.++-.++.+..+. |...=|+++++|..+|.+.|+.|++.==...-.|
T Consensus 29 gLs~~e~~vll~l~~~~~~g~~fPS~~~La~~~g~s~~~v~~~l~~L~~kgli~i~~~ 86 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEEC 86 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9998999999999998876997989999998959499999999999998899799978
No 214
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=62.22 E-value=5.5 Score=18.02 Aligned_cols=32 Identities=16% Similarity=0.364 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8889999999999827689999882899789999999
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQIS 39 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~ 39 (299)
||++.|+-|..-.+..-++ ||+||..|+..+.
T Consensus 1 ~dl~ele~f~~~fk~rRi~-----Lg~SQ~~V~~al~ 32 (151)
T 3d1n_I 1 INMEEIREFAKNFKIRRLS-----LGLTQTQVGQAMT 32 (151)
T ss_dssp -CHHHHHHHHHHHHHHHHT-----TTCCHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHH
T ss_conf 9999999999999987777-----1787866999986
No 215
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1}
Probab=61.55 E-value=6.9 Score=17.46 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=31.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEE
Q ss_conf 6899998828997899999999999958821797699468500
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~ 61 (299)
|...=|+.++||.++|.+.++.||++ | -+..+.|+|...++
T Consensus 37 ser~La~~~~vSr~tVr~Al~~L~~~-G-li~~~~g~G~~V~~ 77 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKELEAQ-K-VIRTIPGKGTFITG 77 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT-T-SEEEETTTEEEECS
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC-C-CEEEECCCEEEEEC
T ss_conf 49999999798989999999999988-9-27997381589807
No 216
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=60.98 E-value=7.1 Score=17.37 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=31.4
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEE
Q ss_conf 6899998828997899999999999958821797699468500
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~ 61 (299)
|.+.=|+.++||..+|.+.++.||++ --+..+.|+|...+.
T Consensus 39 ser~La~~~~VSr~tVr~Al~~L~~~--Glv~~~~g~G~~V~~ 79 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQELERA--GYIYAKRGMGSFVTS 79 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEETTTEEEECC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEECCCEEEECC
T ss_conf 49999999392889999999999988--917996386799808
No 217
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=60.30 E-value=7.4 Score=17.26 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=20.7
Q ss_pred HHCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 8276899998828997899999999
Q gi|254780282|r 16 RSGSFTHAAEQLHLSQSSISRQISG 40 (299)
Q Consensus 16 ~~gs~s~AA~~L~itq~avS~~i~~ 40 (299)
+--+-+.-|++||+|.+.|||-|++
T Consensus 20 ~g~tQ~eIA~~lgiSR~~VsRlL~~ 44 (315)
T 2w48_A 20 QDMTQAQIARELGIYRTTISRLLKR 44 (315)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 4999999999879599999999999
No 218
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=60.21 E-value=7.6 Score=17.21 Aligned_cols=43 Identities=12% Similarity=0.082 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHC-------CHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88889999999999827-------68999988289978999999999999
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG-------SFTHAAEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g-------s~s~AA~~L~itq~avS~~i~~LE~~ 44 (299)
+|+=.++-.++.++.+. |+..=|+.+|+|..+|.+.|+.|++.
T Consensus 29 gLs~~e~~vll~l~~~~~~~~~~PS~~~La~~~g~s~~~v~~~l~~L~~~ 78 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQK 78 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 98999999999999998759999999999989594999999999999988
No 219
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, PSI; 1.90A {Porphyromonas gingivalis W83} SCOP: a.4.5.4 b.82.3.2
Probab=59.91 E-value=5.2 Score=18.14 Aligned_cols=15 Identities=0% Similarity=-0.037 Sum_probs=5.9
Q ss_pred EEECCCCHHHHHHHH
Q ss_conf 453242001356787
Q gi|254780282|r 223 LQVNSYLSIMQYCVL 237 (299)
Q Consensus 223 ~~~~s~~~~~~~v~~ 237 (299)
+.+.|.+.+..++.+
T Consensus 217 i~I~d~~~L~~~a~~ 231 (232)
T 2gau_A 217 IKIIDCDRLQKTARS 231 (232)
T ss_dssp EEESCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHC
T ss_conf 998689999999856
No 220
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=59.76 E-value=5.5 Score=18.01 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=18.4
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 6899998828997899999999
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISG 40 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~ 40 (299)
++.-=|++.|||++|||+.+..
T Consensus 2 Ti~DIA~~aGVS~~TVSraLn~ 23 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINK 23 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
T ss_conf 6899999989699999999679
No 221
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=59.76 E-value=0.98 Score=22.35 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=18.6
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 6899998828997899999999
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISG 40 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~ 40 (299)
++.-=|++.|||.+|||+.|..
T Consensus 14 TikdIA~~aGVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 14 TMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
T ss_conf 6999999988599999999689
No 222
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=59.67 E-value=7.6 Score=17.19 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=20.5
Q ss_pred HHHCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 98276899998828997899999999
Q gi|254780282|r 15 ARSGSFTHAAEQLHLSQSSISRQISG 40 (299)
Q Consensus 15 ~~~gs~s~AA~~L~itq~avS~~i~~ 40 (299)
+...|+..-|++.+||+|+|+|-.++
T Consensus 37 v~~~si~elA~~~~vS~aTI~Rf~kk 62 (111)
T 2o3f_A 37 AIESTVNEISALANSSDAAVIRLCXS 62 (111)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 64378999998979898799999999
No 223
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=59.31 E-value=6.1 Score=17.74 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 8899999999998276899998828997899999999999
Q gi|254780282|r 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLET 43 (299)
Q Consensus 4 d~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~ 43 (299)
|+++ ++...+.+--|...+|++|+||+++|++-+++..+
T Consensus 29 ~lR~-rIv~l~~~G~s~r~IArrl~VS~stV~kil~R~re 67 (159)
T 2k27_A 29 VVRQ-RIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYE 67 (159)
T ss_dssp HHHH-HHHHHHHHTCCHHHHHHHHTCCSHHHHHHHCCSST
T ss_pred HHHH-HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999-99999986999999999889599999999999986
No 224
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=59.12 E-value=7.9 Score=17.10 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=27.5
Q ss_pred HHHHCCHHHHHHHHCCCHHHHHHHH-----------HHHHHHHCCEEEE
Q ss_conf 9982768999988289978999999-----------9999995882179
Q gi|254780282|r 14 VARSGSFTHAAEQLHLSQSSISRQI-----------SGLETEVGIKLFY 51 (299)
Q Consensus 14 v~~~gs~s~AA~~L~itq~avS~~i-----------~~LE~~lg~~Lf~ 51 (299)
..+--|-...|+.++||+++||+-- .++++.||+.|..
T Consensus 23 ~~~glsq~elA~~~gvs~~~is~~E~G~~~p~~~~l~kia~~L~v~L~~ 71 (91)
T 1x57_A 23 QSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRG 71 (91)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSS
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 9819989999987198999999998799889999999999994998645
No 225
>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=58.98 E-value=1.6 Score=21.19 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=18.5
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 6899998828997899999999
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISG 40 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~ 40 (299)
++.-=|++.|||++|||+.|..
T Consensus 5 Ti~DIA~~aGVS~~TVSrvLn~ 26 (338)
T 3dbi_A 5 TMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
T ss_conf 8999999979799999999689
No 226
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=58.42 E-value=6.6 Score=17.55 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=31.9
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEC
Q ss_conf 68999988289978999999999999588217976994685001
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~ 62 (299)
|...-|+.++||.++|.+.++.|+++ |. +-.+.|+|...++.
T Consensus 30 se~~La~~~gVSr~tVR~Al~~L~~~-Gl-v~~~~g~G~~V~~~ 71 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTLLVEA-GI-LYKKRGIGMFVSAQ 71 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHTT-TS-EEEETTTEEEECTT
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC-CC-EEEECCCEEEECCC
T ss_conf 89999989299999999999999988-91-79963866788899
No 227
>1aoy_A Arginine repressor; DNA-binding protein, expression regulation, DNA organization, winged helix; NMR {Escherichia coli K12} SCOP: a.4.5.3
Probab=56.94 E-value=5.1 Score=18.19 Aligned_cols=36 Identities=19% Similarity=0.467 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHCCHHHHHH--------HH-CCCHHHHHHHHHHH
Q ss_conf 99999999998276899998--------82-89978999999999
Q gi|254780282|r 6 DKLRVFYVVARSGSFTHAAE--------QL-HLSQSSISRQISGL 41 (299)
Q Consensus 6 ~~L~~f~~v~~~gs~s~AA~--------~L-~itq~avS~~i~~L 41 (299)
+.++.+..+.+...++.=++ -. ++||++|||-|++|
T Consensus 9 ~~l~~I~~lI~~~~i~tQ~eL~~~L~~~G~~~vTQaTiSRDL~eL 53 (78)
T 1aoy_A 9 ELVKAFKALLKEEKFSSQGEIVAALQEQGFDNINQSKVSRMLTKF 53 (78)
T ss_dssp THHHHHHHHHHTCCCCSHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEECHHHHHHHHHHH
T ss_conf 999999999982885679999999998298665298899999980
No 228
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=56.54 E-value=7 Score=17.39 Aligned_cols=94 Identities=10% Similarity=0.042 Sum_probs=51.2
Q ss_pred CCCCCCCCCCCCC-CCCCHHHHHHH-HHHCCCCCCCCCC-C---CCCCCCCCCCCCCCCCCC----------C-----CC
Q ss_conf 2333211100000-00001356675-4200012222222-2---222222222222345654----------3-----21
Q gi|254780282|r 94 KLRIATTIDLGQN-LLQGNLKEFLL-LYPDIQIQLILDN-K---DIDISMDYADCAIRLRKP----------I-----QS 152 (299)
Q Consensus 94 ~i~I~~~~~~~~~-~l~~~l~~f~~-~~P~i~i~i~~~~-~---~~~l~~~~~Di~i~~~~~----------~-----~~ 152 (299)
.++|+..+.=+.+ -+...|.+..+ ..|++++.+..+. . ...+..|++|+++..... . ..
T Consensus 20 ~l~i~tg~~gg~~~~~g~~ia~~~~~~~~gi~~~~~~t~Gs~~N~~~l~~g~~d~a~~~~~~~~~~~~~~g~~~~~~~~~ 99 (314)
T 1us5_A 20 FITIGSGSTTGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPV 99 (314)
T ss_dssp EEEEECCCTTSSHHHHHHHHHHHHHHHTSSEEEEEECCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCCC
T ss_conf 48999799997149999999999973589848999807888999999976997199975089999984668753345754
Q ss_pred CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1112-234555433211234432111222222110001123
Q gi|254780282|r 153 SSLI-QRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192 (299)
Q Consensus 153 ~~l~-~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i 192 (299)
+++. .-.++.+.+.++++++ ....+++||.+.+.-
T Consensus 100 ~~lr~v~~~~~~~~~~~v~~d-----s~I~s~~DL~Gkrv~ 135 (314)
T 1us5_A 100 KTIRALAALYPEVVHVVARKD-----AGIRTVADLKGKRVV 135 (314)
T ss_dssp TTEEEEEEEEEEEEEEEEETT-----SSCSSGGGGTTSEEE
T ss_pred CCEEEEEEECHHHHEEEECCC-----CCCCCHHHHCCCEEE
T ss_conf 040278870511331330377-----776778880887751
No 229
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=56.16 E-value=6.8 Score=17.49 Aligned_cols=42 Identities=12% Similarity=0.263 Sum_probs=32.9
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEC
Q ss_conf 68999988289978999999999999588217976994685001
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~ 62 (299)
|-..=|+++|||.++|...++.||.+ |. +-.|.|+|...++.
T Consensus 33 se~eLa~~~gVSr~tVReAl~~L~~e-Gl-v~~~~g~G~~V~~~ 74 (239)
T 1hw1_A 33 AERELSELIGVTRTTLREVLQRLARD-GW-LTIQHGKPTKVNNF 74 (239)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT-TS-EEEETTEEEEECCH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC-CC-CEEECCCCCEECCC
T ss_conf 59999999892999999999999987-99-55555886656378
No 230
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=55.89 E-value=6.5 Score=17.60 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=19.8
Q ss_pred HHHHHHHHC--CHHHHHHHHCCCHHHHHHHHH
Q ss_conf 999999827--689999882899789999999
Q gi|254780282|r 10 VFYVVARSG--SFTHAAEQLHLSQSSISRQIS 39 (299)
Q Consensus 10 ~f~~v~~~g--s~s~AA~~L~itq~avS~~i~ 39 (299)
.+..+-+.. |-...|+.+|+|||+||+-.+
T Consensus 22 ~Ir~~R~~~glTQ~elA~~~gvs~~~is~iE~ 53 (83)
T 2a6c_A 22 VLQEHLRNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 99999999599999999998778999999987
No 231
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=54.27 E-value=9.6 Score=16.62 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=22.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 768999988289978999999999
Q gi|254780282|r 18 GSFTHAAEQLHLSQSSISRQISGL 41 (299)
Q Consensus 18 gs~s~AA~~L~itq~avS~~i~~L 41 (299)
.|++.+|+.+|||+++|++=+++.
T Consensus 24 ~s~~~vA~~~GIs~~tl~~W~k~~ 47 (97)
T 2jn6_A 24 ASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 859999999789957446899998
No 232
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua}
Probab=53.71 E-value=7.8 Score=17.12 Aligned_cols=41 Identities=22% Similarity=0.184 Sum_probs=31.6
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEE
Q ss_conf 6899998828997899999999999958821797699468500
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~ 61 (299)
|-..=|++++||..||-++++.||++ --+..+.|+|...++
T Consensus 35 sE~eLa~~~~VSr~TvR~Al~~L~~e--Gli~r~~g~GtfV~~ 75 (236)
T 3edp_A 35 NETALQEIYSSSRTTIRRAVDLLVEE--GLVVRKNGVGLYVQP 75 (236)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEETTTEEEECC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHH--CCCEECCCCEEEECC
T ss_conf 79999999795999999999999972--150405886699860
No 233
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=53.67 E-value=9.8 Score=16.57 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=25.7
Q ss_pred HHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9827689999882899789999999999995
Q gi|254780282|r 15 ARSGSFTHAAEQLHLSQSSISRQISGLETEV 45 (299)
Q Consensus 15 ~~~gs~s~AA~~L~itq~avS~~i~~LE~~l 45 (299)
.+.-|+...|+.|++|.+||+.+|++-.+.|
T Consensus 36 ~~~ls~~EIA~~lgis~~~V~~~l~Ra~~~L 66 (113)
T 1s7o_A 36 ADDYSLAEIADEFGVSRQAVYDNIKRTEKIL 66 (113)
T ss_dssp HTCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9731299999998979999999999999999
No 234
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=52.76 E-value=4.3 Score=18.63 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=28.8
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEE
Q ss_conf 6899998828997899999999999958821797699468
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~ 58 (299)
|-...|+.++||.+||++=+++ |.|...++++|..
T Consensus 4 Nk~qlA~~fgVS~~TI~~W~~~-----GmPvi~~Gg~G~~ 38 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQEQ-----GMPVLRGGGKGNE 38 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHTTT-----TCCCSSCCCSSSC
T ss_pred CHHHHHHHHCCCHHHHHHHHHC-----CCCEEECCCCCCC
T ss_conf 8999999979888999999987-----9997755899853
No 235
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B*
Probab=52.44 E-value=10 Score=16.45 Aligned_cols=69 Identities=12% Similarity=-0.001 Sum_probs=38.0
Q ss_pred EEECCCCHHHHHHHHHCCEEEEEH-----HHHCCCC--CEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 453242001356787384233117-----7760199--84661776667660089993487788889999999999
Q gi|254780282|r 223 LQVNSYLSIMQYCVLGSGIALLPD-----YIVKDNP--NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 (299)
Q Consensus 223 ~~~~s~~~~~~~v~~g~Gia~lp~-----~~~~~~~--~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~ 291 (299)
...++...++.++..|..-+++-+ +.+.+++ +++.+..........++++.+++..+...+...+.-|.
T Consensus 190 ~~~~~~~e~~~~l~~G~vDa~i~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~gia~~k~s~l~~~in~ai~~l~ 265 (284)
T 2a5s_A 190 FNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFV 265 (284)
T ss_dssp GCCSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTSCEEEEECCCGGGCEEECCEEETTCTTHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 2489999999999869987896459999999985899858993588765760699998188399999999999999
No 236
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme pcc 73102}
Probab=51.59 E-value=11 Score=16.37 Aligned_cols=168 Identities=10% Similarity=0.036 Sum_probs=78.0
Q ss_pred CCCCHHHHHHHHHHCCCCCCC-CCC---CCCCCCCCCCCCCCC-CCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 000013566754200012222-222---222222222222234-565-4321111-223455543321123443211122
Q gi|254780282|r 107 LLQGNLKEFLLLYPDIQIQLI-LDN---KDIDISMDYADCAIR-LRK-PIQSSSL-IQRKLVTIHMHAYAAPHYLKNCRE 179 (299)
Q Consensus 107 ~l~~~l~~f~~~~P~i~i~i~-~~~---~~~~l~~~~~Di~i~-~~~-~~~~~~l-~~~~l~~~~~~~v~~~~~~~~~~~ 179 (299)
+..+++..+.++. ++++++. ..+ ....+..|++|+++. +.. +.....+ ...+++....++++...... ...
T Consensus 26 ~~~di~~~i~~~l-g~~~~~v~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~~s~p~~~~~~~~i~~~~~~~-~~~ 103 (228)
T 2pyy_A 26 FSIDLWRSIATQI-GIESKLIEYSSVPELISAIKDNKVNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLESG-TGD 103 (228)
T ss_dssp HHHHHHHHHHHHH-TCCEEEEECSSHHHHHHHHHTTSCSEECSSCBCCHHHHHHSEECSCSEEEEEEEEEEC------CC
T ss_pred EHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCC-CCC
T ss_conf 5999999999996-99739996799999999998599766710255798898534467872125613676314456-534
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCE-EEEEHHHH----CC--C
Q ss_conf 22221100011235664332110002356652022343212114532420013567873842-33117776----01--9
Q gi|254780282|r 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI-ALLPDYIV----KD--N 252 (299)
Q Consensus 180 ~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gi-a~lp~~~~----~~--~ 252 (299)
..+++++.+...... .......++... ......+++....+.++..|..= .+.+...+ .. .
T Consensus 104 ~~~~~~l~~~~i~~~-----~g~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~gr~d~~i~~~~~~~~~~~~~~~ 171 (228)
T 2pyy_A 104 IRSIDDLPGKVVATT-----AGSTAATYLREH-------HISVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGK 171 (228)
T ss_dssp CCSGGGCTTCEEEEE-----TTSHHHHHHHHT-------TCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTT
T ss_pred CCCHHHCCCCEEEEC-----CCCHHHHHHHHH-------HCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCC
T ss_conf 588788299889843-----896899999875-------20211132488888786459467999631888999984688
Q ss_pred CCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 98466177666766008999348778888999999999
Q gi|254780282|r 253 PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 (299)
Q Consensus 253 ~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l 290 (299)
..+ .+... ......++++.+++..+-..+...++-+
T Consensus 172 ~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~ln~~l~~l 207 (228)
T 2pyy_A 172 GKV-EIVGS-ILREESYGIILPNNSPYRKPINQALLNL 207 (228)
T ss_dssp TTE-EEEEE-EEEEEEECCEECTTCTTHHHHHHHHHHH
T ss_pred CCE-EECCC-CCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 835-88346-6766328999779989999999999999
No 237
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=50.29 E-value=7.4 Score=17.28 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=13.1
Q ss_pred HCCCHHHHHHHHHHH
Q ss_conf 289978999999999
Q gi|254780282|r 27 LHLSQSSISRQISGL 41 (299)
Q Consensus 27 L~itq~avS~~i~~L 41 (299)
..+||++||+-|++|
T Consensus 34 i~vTQaTlSRDL~eL 48 (64)
T 2p5k_A 34 YKVTQATVSRDIKEL 48 (64)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCEEHHHHHHHHHHH
T ss_conf 836389989889991
No 238
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=50.11 E-value=9.1 Score=16.75 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=16.5
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 6899998828997899999999
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISG 40 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~ 40 (299)
++..+|+.|+||+++|.+.++.
T Consensus 33 t~~evA~~LGvs~~~V~~~i~~ 54 (148)
T 2kfs_A 33 DLPRVAELLGVPVSKVAQQLRE 54 (148)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHHC
T ss_conf 8999999969988999999986
No 239
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=48.94 E-value=12 Score=16.12 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHC---CHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9999999999827---689999882899789999999
Q gi|254780282|r 6 DKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQIS 39 (299)
Q Consensus 6 ~~L~~f~~v~~~g---s~s~AA~~L~itq~avS~~i~ 39 (299)
+.|+.++.-.+.. |.+.-|+.+++|+++||+-.+
T Consensus 16 ~rLk~l~~~~r~e~Glsq~elA~~~Gis~~tis~~e~ 52 (236)
T 3bdn_A 16 RRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFN 52 (236)
T ss_dssp HHHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9999999999998399999999997979999988872
No 240
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=47.90 E-value=11 Score=16.27 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 6899998828997899999999
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISG 40 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~ 40 (299)
++.-=|++.|||++|||+.|..
T Consensus 11 Tl~diA~~agVS~~TVsraLn~ 32 (366)
T 3h5t_A 11 TLASIAAKLGISRTTVSNAYNR 32 (366)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHC
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
T ss_conf 3999999988799999999689
No 241
>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102}
Probab=47.68 E-value=12 Score=16.01 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=15.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 7689999882899789999999
Q gi|254780282|r 18 GSFTHAAEQLHLSQSSISRQIS 39 (299)
Q Consensus 18 gs~s~AA~~L~itq~avS~~i~ 39 (299)
-|-+.-|+.+|||+++||+-++
T Consensus 32 isq~eLA~~lGvs~~~is~~e~ 53 (104)
T 3cec_A 32 INTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9899999997837899999975
No 242
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=47.10 E-value=7 Score=17.41 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=14.7
Q ss_pred HHHHHCCCHHHHHHHHHHH
Q ss_conf 9988289978999999999
Q gi|254780282|r 23 AAEQLHLSQSSISRQISGL 41 (299)
Q Consensus 23 AA~~L~itq~avS~~i~~L 41 (299)
+.+-..+||+||||-|++|
T Consensus 30 ~~~Gi~vTQATiSRDlkeL 48 (149)
T 1b4a_A 30 REAGFNVTQATVSRDIKEM 48 (149)
T ss_dssp HHTTCCCCHHHHHHHHHHT
T ss_pred HHCCCCCCHHHHHHHHHHH
T ss_conf 9869854089988889983
No 243
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=47.08 E-value=8.6 Score=16.90 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=36.3
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEE
Q ss_conf 6899998828997899999999999958821797699468500
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~ 61 (299)
+++..+.+.++++..+.+.++.|...=...+|...++.+..+.
T Consensus 19 ~~~e~~~~~~l~~~~~~~~L~~l~~~~~v~~~~~~~~~~~~~~ 61 (258)
T 1lva_A 19 DWQEAATRASLSLEETRKLLQSMAAAGQVTLLRVENDLYAIST 61 (258)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECH
T ss_conf 9999999959899999999999885797799955894599879
No 244
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=46.61 E-value=13 Score=15.91 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=29.6
Q ss_pred HHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99999827689999882899789999999999995
Q gi|254780282|r 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEV 45 (299)
Q Consensus 11 f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~l 45 (299)
-..+++-.+.+.+|..+|+|-.+||+.+++.-..+
T Consensus 28 r~VLV~G~~~~evA~~~Glskq~V~~~V~rv~~~~ 62 (101)
T 2w7n_A 28 RGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAF 62 (101)
T ss_dssp HHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99984884099999996803889999999999998
No 245
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, non-classical hydrogen bonds; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A
Probab=46.26 E-value=13 Score=15.87 Aligned_cols=55 Identities=9% Similarity=-0.008 Sum_probs=37.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC--CCC---CCCCCCCCCCCCCCC
Q ss_conf 22223332111000000000135667542000122222--222---222222222222345
Q gi|254780282|r 91 PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL--DNK---DIDISMDYADCAIRL 146 (299)
Q Consensus 91 ~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~--~~~---~~~l~~~~~Di~i~~ 146 (299)
...+|+||........++..+++...++. +..+++.. ++. ...|..|++|+..-+
T Consensus 4 ~~~~v~Ig~~~w~~~~~~a~i~~~~Le~~-Gy~Ve~~~~~~~~~~~~~al~~GdiDv~~e~ 63 (275)
T 1sw5_A 4 SSERVVIGSKPFNEQYILANMIAILLEEN-GYKAEVKEGLGGTLVNYEALKRNDIQLYVEY 63 (275)
T ss_dssp --CCEEECCCSSHHHHHHHHHHHHHHHHT-TCCEEECTTCCSHHHHHHHHHHTSSSEEEEE
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 89987996788859999999999999986-9965998647860889999976997789730
No 246
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=45.77 E-value=3.5 Score=19.13 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=38.6
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCEEE-EECCCCEEEEECCCCCCCCCC
Q ss_conf 99988289978999999999999588217-976994685001343322222
Q gi|254780282|r 22 HAAEQLHLSQSSISRQISGLETEVGIKLF-YRHARGLTLTEQGSKLHRVTS 71 (299)
Q Consensus 22 ~AA~~L~itq~avS~~i~~LE~~lg~~Lf-~R~~~~~~lT~~G~~l~~~a~ 71 (299)
.=|+.+++.+.+|-..++.||+.=+..-+ .+....+.||++|+..++..-
T Consensus 25 ela~~~g~~~~~v~~~~~sL~~~g~li~~e~~~~~~~~LT~eG~~y~~~Gl 75 (508)
T 3l4g_A 25 ELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEEIAREGS 75 (508)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECHHHHHHHHCCC
T ss_conf 999884999999999999997389859999998889988888999998399
No 247
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A
Probab=45.73 E-value=6.2 Score=17.72 Aligned_cols=24 Identities=8% Similarity=-0.022 Sum_probs=18.0
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 999348778888999999999999
Q gi|254780282|r 270 YFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 270 ~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
.++..++.....++..|++|+.+.
T Consensus 265 ~~~i~~~s~~~e~A~~fl~~l~s~ 288 (371)
T 3thi_A 265 VVSVNSKTAHPELAKKLANVMASA 288 (371)
T ss_dssp EEEEETTCSCHHHHHHHHHHHHSH
T ss_pred CEEECCCCCCHHHHHHHHHHHCCH
T ss_conf 447417899999999999997599
No 248
>2b0l_A GTP-sensing transcriptional pleiotropic repressor CODY; DNA-binding, nucleotide-binding, transcription regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=45.12 E-value=13 Score=15.77 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=18.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8999988289978999999999999
Q gi|254780282|r 20 FTHAAEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 20 ~s~AA~~L~itq~avS~~i~~LE~~ 44 (299)
-|+-|++.+||.|-+-..+++||..
T Consensus 46 ASkIADrvGITRSVIVNALRKlESA 70 (102)
T 2b0l_A 46 ASKIADRVGITRSVIVNALRKLESA 70 (102)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred EHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 0755454097189999999876534
No 249
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=44.64 E-value=3.2 Score=19.39 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=23.5
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEE
Q ss_conf 689999882899789999999999995882179769946850
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT 60 (299)
|...-|+.++||+.+|.+.++.||.+ --+..|.++|...+
T Consensus 37 ser~La~~~~vSr~tvr~Al~~L~~~--Gli~~~~g~G~~V~ 76 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAVLKSE--GLVSSRGALGTVVE 76 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTTTTTS--SCCEEETTTEEESC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEECCCEEEEC
T ss_conf 79999999798779999999999988--94899758679987
No 250
>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf}
Probab=44.63 E-value=3.8 Score=18.97 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.6
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 6899998828997899999999
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISG 40 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~ 40 (299)
|+..=|++.|||.+|||+.|..
T Consensus 4 tikdIA~~agVS~~TVSr~Ln~ 25 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
T ss_conf 8999999989699999999689
No 251
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=44.50 E-value=9.8 Score=16.56 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=35.4
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEE
Q ss_conf 6899998828997899999999999958821797699468500
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~ 61 (299)
+++.-+.+.+++...+.+.+..|.+.=...+|.+.++.+..+.
T Consensus 19 ~~~el~~~~~l~~~~l~~~L~~L~~~g~i~~~~~~~~~~~~~~ 61 (135)
T 2v9v_A 19 DWQEAATRASLSLEETRKLLQSMAAAGQVTLLRVENDLYAIST 61 (135)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECH
T ss_conf 9999999949899999999999850895899950796599879
No 252
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=43.09 E-value=14 Score=15.58 Aligned_cols=41 Identities=22% Similarity=0.232 Sum_probs=28.1
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEE
Q ss_conf 9999999982768999988289978999999999999588217
Q gi|254780282|r 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLF 50 (299)
Q Consensus 8 L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf 50 (299)
+.|-.....-.+-..-|+++|+|.|+||+.++-+. |...+.
T Consensus 15 ~~~~~l~~~g~tQ~elAe~lg~Srs~Vsr~lrl~~--LP~~vi 55 (192)
T 1zx4_A 15 LRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQAAS--APEELV 55 (192)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHT--SCHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHC--CCHHHH
T ss_conf 99999998599999999998879999999999986--999999
No 253
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=42.89 E-value=11 Score=16.22 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=11.0
Q ss_pred HCCCHHHHHHHHHHH
Q ss_conf 289978999999999
Q gi|254780282|r 27 LHLSQSSISRQISGL 41 (299)
Q Consensus 27 L~itq~avS~~i~~L 41 (299)
..+||+||||-|++|
T Consensus 49 i~vTQATiSRDlkeL 63 (170)
T 3lap_A 49 IEVTQATLSRDLEEL 63 (170)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCEEHHHHHHHHHHH
T ss_conf 854189989889984
No 254
>3hn0_A Nitrate transport protein; YP_001302749.1, structural genomics, joint center for structural genomics, JCSG; 1.75A {Parabacteroides distasonis}
Probab=41.63 E-value=9.8 Score=16.57 Aligned_cols=189 Identities=12% Similarity=0.056 Sum_probs=79.0
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHH-HHHHHCCCCCCCCC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22333211100000000013566-75420001222222-22-22222222222234565432111122345554332112
Q gi|254780282|r 93 GKLRIATTIDLGQNLLQGNLKEF-LLLYPDIQIQLILD-NK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYA 169 (299)
Q Consensus 93 g~i~I~~~~~~~~~~l~~~l~~f-~~~~P~i~i~i~~~-~~-~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~~~~~~v~ 169 (299)
.+||||..++.....+...+..- ....-++++++..+ +. ...+..|++|+++...... ..+...- .++.+++
T Consensus 5 ~~irv~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~s~~~~~~~l~~G~~D~~~~~~~~~--~~~~~~G---~~i~iia 79 (283)
T 3hn0_A 5 TVIKVSVLRGPSVIAFADWLENPPIIDNKKVQVKVVDSPDLAQALLIKQETDIAVLPMINA--ANLYNKG---IKIKLAG 79 (283)
T ss_dssp CEEEEEEESSTHHHHTHHHHHSCCEETTEEEEEEEESCHHHHHHHHHTTCCSEEEEEHHHH--HHHHHTT---CSCEEEE
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEECHHHH--HHHHHCC---CCEEEEE
T ss_conf 6599992589618999999984474578986899957999999999779998997368999--9999689---9748999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHC-CEEEEEHHH
Q ss_conf 3443211122222211000112356643321100023566520223432121145324200135678738-423311777
Q gi|254780282|r 170 APHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPDYI 248 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~-Gia~lp~~~ 248 (299)
... ......++.+||.+-.+...............++...+.. ....+...+...+..+..+|. -.+++++-.
T Consensus 80 ~~~--~g~~~ivs~~DLkGk~i~~~~~gs~~~~~~~~~l~~~Gl~----~~~~~~~~~~~~~~~al~~g~vDaa~~~eP~ 153 (283)
T 3hn0_A 80 CPI--WGTLYLVEKTPLKEPALYVFGNGTTPDILTRYYLGRQRLD----YPLNYAFNTAGEITQGILAGKVNRAVLGEPF 153 (283)
T ss_dssp EEE--CCCCEEEECSSCCSCCEECSSTTSHHHHHHHHHHHHHTCC----CCEECSCCSHHHHHHHHHHTSCSEEEECTTH
T ss_pred EEC--CCCCEEEEHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCC----CCEEEEECCHHHHHHHHHCCCCCEEEECCHH
T ss_conf 841--5863486378749899999389978999999999977998----4403674382888999867997789844368
Q ss_pred ---H-CCCCCEEEEC---CCCCCCCCE---EEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf ---6-0199846617---766676600---89993487788889999999999998
Q gi|254780282|r 249 ---V-KDNPNLVRIM---EDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKA 294 (299)
Q Consensus 249 ---~-~~~~~lv~i~---~~~~~~~~~---~~lv~~~~~~~~~~~~~f~d~l~~~~ 294 (299)
+ .+.+.+..+. ..+...... ....+.+ ..+..+++|++.+.+..
T Consensus 154 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~~a~~~a~ 207 (283)
T 3hn0_A 154 LSIALRKDSSLRITADLNHLTDNDTLGFAQTAVVYTP--TMEKYRIAFEDALRASC 207 (283)
T ss_dssp HHHHHHHCTTCEEEEECCCSSTTCSSCCCCEEEEECG--GGGGGHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEECHHHCCCCCCCCHHHHHHHHH--HCHHHHHHHHHHHHHHH
T ss_conf 9999971798299974046326777652001798875--36788999999999999
No 255
>2obp_A Putative DNA-binding protein; YP_298295.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Ralstonia eutropha JMP134} SCOP: a.4.5.71
Probab=41.53 E-value=8.8 Score=16.83 Aligned_cols=51 Identities=24% Similarity=0.338 Sum_probs=36.1
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHH-HCCEEEEECCCC-EEEEECCCCCCCC
Q ss_conf 68999988289978999999999999-588217976994-6850013433222
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETE-VGIKLFYRHARG-LTLTEQGSKLHRV 69 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~-lg~~Lf~R~~~~-~~lT~~G~~l~~~ 69 (299)
|+.+=+++.+|-=|++-|.+.+|.+. +-..-|.-.|+| -.||+.|+.+...
T Consensus 38 SLAkl~KRa~vpMStLRR~LT~L~~aGlv~~~~~edG~g~A~LT~~G~~lc~~ 90 (96)
T 2obp_A 38 SLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALAAQ 90 (96)
T ss_dssp BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHHHH
T ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEHHHHHHHHHHHH
T ss_conf 39999877089679999999998617805888635774010041668999999
No 256
>3bwg_A Uncharacterized HTH-type transcriptional regulator YYDK; APC85486, structural genomics, PSI-2, protein structure initiative; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=41.28 E-value=15 Score=15.42 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=31.8
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEE
Q ss_conf 6899998828997899999999999958821797699468500
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~ 61 (299)
|-..=|+.++||..+|.+.++.|+++ --+..+.|+|...++
T Consensus 31 sE~~La~~~~VSR~TvR~Al~~L~~~--G~i~~~~G~Gt~V~~ 71 (239)
T 3bwg_A 31 VLETLMAQFEVSKSTITKSLELLEQK--GAIFQVRGSGIFVRK 71 (239)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEETTTEEEECC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHH--CCEECCCCCCEEECC
T ss_conf 69999999895999999999999972--460524887249998
No 257
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=41.18 E-value=4.6 Score=18.47 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.1
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 6899998828997899999999
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISG 40 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~ 40 (299)
++.--|++.|||++|||+.|.+
T Consensus 8 Ti~diA~~aGVS~aTVSr~Ln~ 29 (333)
T 3jvd_A 8 SLKEVAELAGVGYATASRALSG 29 (333)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
T ss_conf 7999999989799999999689
No 258
>3g41_A Amino acid ABC transporter, periplasmic amino acid-binding protein; aminoacid transporter, structural genomics, bacabs EU FP6 programme; HET: ARG; 2.10A {Chlamydophila pneumoniae} PDB: 3n26_A*
Probab=40.92 E-value=16 Score=15.39 Aligned_cols=170 Identities=11% Similarity=0.014 Sum_probs=79.1
Q ss_pred CCCCCCCCCCCCCCC-----------CCCCHHHHHHHHHHCCCCCCCCC---CCCCCCCCCCCCCCCCC-C-CCCCCCCC
Q ss_conf 222333211100000-----------00001356675420001222222---22222222222222345-6-54321111
Q gi|254780282|r 92 SGKLRIATTIDLGQN-----------LLQGNLKEFLLLYPDIQIQLILD---NKDIDISMDYADCAIRL-R-KPIQSSSL 155 (299)
Q Consensus 92 ~g~i~I~~~~~~~~~-----------~l~~~l~~f~~~~P~i~i~i~~~---~~~~~l~~~~~Di~i~~-~-~~~~~~~l 155 (299)
.++++||+...+.++ +..+++..+.+.- ++++++... .....+..|++|+.+.. . .+.....+
T Consensus 9 ~~~l~Vg~~~~~~P~~~~~~~g~~~G~~~dl~~~ia~~l-g~~~~~~~~~~~~~~~~l~~g~~d~i~~~~~~~~~r~~~~ 87 (246)
T 3g41_A 9 NRIWIVGTNATYPPFEYVDAQGEVVGFDIDLAKAISEKL-GKQLEVREFAFDALILNLKKHRIDAILAGMSITPSRQKEI 87 (246)
T ss_dssp CCEEEEEECSCBTTTBEECTTSCEESHHHHHHHHHHHHH-TCEEEEEECCGGGHHHHHHTTSSSEECSCCBCCHHHHTTS
T ss_pred CCCEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHCCCC
T ss_conf 895999989988993489999988872999999999996-9966999889899999997599887966231586660343
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHH
Q ss_conf 2-234555433211234432111222222110001123566433211000235665202234321211453242001356
Q gi|254780282|r 156 I-QRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 (299)
Q Consensus 156 ~-~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 234 (299)
. ..++......++..++- .....+.++|.+... +...+. ....++.. .+......+++...++.+
T Consensus 88 ~fs~~~~~~~~~l~~~~~~---~~~~~~~~~l~~~~I-gv~~gs----~~~~~l~~------~~~~~~~~~~~~~~~~~~ 153 (246)
T 3g41_A 88 ALLPYYGDEVQELMVVSKR---SLETPVLPLTQYSSV-AVQTGT----YQEHYLLS------QPGICVRSFDSTLEVIME 153 (246)
T ss_dssp EEEEEECCCBCEEEEEEET---TCCSCSCCGGGSSCE-EEETTS----HHHHHHHT------STTCCEEEESCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCEE-EEEECC----HHHHHHHH------CCCCEEEEECHHHHHHHH
T ss_conf 4342333334332112222---344441001234058-885153----79999983------887538983407878889
Q ss_pred HHHHCCEE-EEEHH----HHCCCCCEEEE--CCCCCCCCCEEEEEECCC
Q ss_conf 78738423-31177----76019984661--776667660089993487
Q gi|254780282|r 235 CVLGSGIA-LLPDY----IVKDNPNLVRI--MEDVITPSFTVYFCYPEA 276 (299)
Q Consensus 235 v~~g~Gia-~lp~~----~~~~~~~lv~i--~~~~~~~~~~~~lv~~~~ 276 (299)
+..|..=+ +.+.. .+++.+.+... ..........+++..+++
T Consensus 154 L~~GriD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~k~ 202 (246)
T 3g41_A 154 VRYGKSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAKD 202 (246)
T ss_dssp HHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEECTT
T ss_pred HHCCCCCHHHHCHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEEECC
T ss_conf 8759843113069999999985456530232258754430389999698
No 259
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=40.70 E-value=16 Score=15.37 Aligned_cols=37 Identities=16% Similarity=0.042 Sum_probs=22.1
Q ss_pred CCCCH-HHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 98888-999999999982768999988289978999999
Q gi|254780282|r 1 MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQI 38 (299)
Q Consensus 1 m~md~-~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i 38 (299)
|+.++ +.|+.+.. ..--|-..-|+.++||++++|+--
T Consensus 1 m~~~ig~rik~~R~-~~gltq~elA~~~Gis~~tis~~E 38 (99)
T 2l49_A 1 MSNTISEKIVLMRK-SEYLSRQQLADLTGVPYGTLSYYE 38 (99)
T ss_dssp CCCCTTHHHHHHHH-HTTCCHHHHHHHHCCCHHHHHHHT
T ss_pred CCHHHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 95799999999999-939999999999698999999998
No 260
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=40.48 E-value=16 Score=15.35 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9999999999827689999882899789999999
Q gi|254780282|r 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQIS 39 (299)
Q Consensus 6 ~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~ 39 (299)
+.|+.+. -..--|....|+.++||+++||+--+
T Consensus 12 ~rlk~~R-~~~gltq~elA~~~gvs~~~vs~~E~ 44 (114)
T 3op9_A 12 ENLSRLK-KEHGLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp HHHHHHH-HHHTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHH-HHCCCCHHHHHHHHCCCCCHHHHHHC
T ss_conf 9999999-98599999997610887327999965
No 261
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=40.37 E-value=16 Score=15.33 Aligned_cols=41 Identities=20% Similarity=0.071 Sum_probs=30.5
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEE
Q ss_conf 6899998828997899999999999958821797699468500
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~ 61 (299)
|-..=|++++||..+|.+.++.|+++= -+..+.|+|.-..+
T Consensus 55 sereLA~~~gVSR~TVR~Al~~L~~~G--lv~~~~G~GtfV~~ 95 (272)
T 3eet_A 55 SQARIREEYGVSDTVALEARKVLMAEG--LVEGRSGSGTYVRE 95 (272)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTT--SEEECCC--EEECC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCC--CEEECCCCEEEECC
T ss_conf 899999998949999999999999869--93864981169926
No 262
>1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} SCOP: a.35.1.3 PDB: 2gzu_A
Probab=40.22 E-value=16 Score=15.32 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHH-----------HHHHHHHCCEE
Q ss_conf 88999999999982768999988289978999999-----------99999958821
Q gi|254780282|r 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQI-----------SGLETEVGIKL 49 (299)
Q Consensus 4 d~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i-----------~~LE~~lg~~L 49 (299)
+++.++. ..--|-..-|+.+|+|+++||+-. .++-+.||+++
T Consensus 5 ri~~lR~----~~g~tq~~lA~~~gis~~~is~~e~g~~~ps~~~l~~ia~~l~v~~ 57 (66)
T 1utx_A 5 NLKLIRE----KKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPL 57 (66)
T ss_dssp CHHHHHH----HTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSCH
T ss_pred HHHHHHH----HCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCH
T ss_conf 9999999----8499999998872998999999987998999999999999989779
No 263
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=39.50 E-value=16 Score=15.25 Aligned_cols=44 Identities=14% Similarity=0.284 Sum_probs=28.6
Q ss_pred HHHHHHHHH-HHH--HCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEE
Q ss_conf 899999999-998--2768999988289978999999999999588217
Q gi|254780282|r 5 WDKLRVFYV-VAR--SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLF 50 (299)
Q Consensus 5 ~~~L~~f~~-v~~--~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf 50 (299)
|+.=+.|.. +.+ ..+-..-|+++|+|++.||+.|+-++ |-..+.
T Consensus 27 ~E~a~~y~rlL~~~~~~tq~eLA~~lG~Srs~VS~~L~l~~--LP~~I~ 73 (189)
T 3mky_B 27 YERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAK--LPKSVV 73 (189)
T ss_dssp HHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHHHH--SCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHC--CCHHHH
T ss_conf 99999999999864388899999997979999999998865--899999
No 264
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=39.24 E-value=17 Score=15.23 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=17.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 68999988289978999999999999
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~ 44 (299)
+=..|+++-+|+|+-+|+.+++|+.-
T Consensus 62 ~rk~ac~r~~V~~syfS~~L~rL~~v 87 (111)
T 3m8j_A 62 SRKDVCEKYQMNNGYFSTTLGRLTRL 87 (111)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 09999999099789999999999999
No 265
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=37.41 E-value=18 Score=15.06 Aligned_cols=38 Identities=13% Similarity=0.049 Sum_probs=26.6
Q ss_pred CCCC--HHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9888--89999999999827689999882899789999999
Q gi|254780282|r 1 MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQIS 39 (299)
Q Consensus 1 m~md--~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~ 39 (299)
||.+ =+.|+....-.. -|....|+.+++|++++|+-.+
T Consensus 1 M~~~~ig~rlr~~R~~~g-lsq~~la~~~gvs~~~i~~~e~ 40 (68)
T 2r1j_L 1 MNTQLMGERIRARRKKLK-IRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp --CCCHHHHHHHHHHHHT-CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCC-CCHHHHHHHCCCCHHHHHHHHC
T ss_conf 988999999999999859-9999998873999999999987
No 266
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=37.39 E-value=8.5 Score=16.92 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=23.0
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 23332111000000000135667542000122222
Q gi|254780282|r 94 KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 (299)
Q Consensus 94 ~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~ 128 (299)
.|+|.+..+.. ..+-.++.+|.++||+|+|++..
T Consensus 6 ~ltv~~~gs~~-~~~~~l~~~Fe~~~P~i~V~~~~ 39 (296)
T 3cfx_A 6 VLTVFHAGSLS-VPFEELEAEFEAQHPGVDVQREA 39 (296)
T ss_dssp EEEEEECGGGH-HHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EEEEEECCCHH-HHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 79999756719-99999999999888393899996
No 267
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=37.33 E-value=8.1 Score=17.04 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=23.0
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 223332111000000000135667542000122222
Q gi|254780282|r 93 GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 (299)
Q Consensus 93 g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~ 128 (299)
.+|+|....+. ...+-.++.+|.++||+|+|++..
T Consensus 5 v~Ltv~~ags~-~~~~~~~~~~Fe~~~P~I~V~~~~ 39 (295)
T 3cij_A 5 VKLKVFHAGSL-TEPMKAFKRAFEEKHPNVEVQTEA 39 (295)
T ss_dssp CEEEEEEEGGG-HHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred EEEEEEECCCC-HHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 08999982685-999999999999888490899996
No 268
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, alternative splicing, calcium, cell junction, coiled coil, glycoprotein, ION transport; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=37.04 E-value=18 Score=15.02 Aligned_cols=170 Identities=12% Similarity=0.027 Sum_probs=67.2
Q ss_pred CCCCHHHHHHHHHHCCCCCCCC--------------CCCCCCCCCCCCCCCCCCCC--CCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 0000135667542000122222--------------22222222222222234565--43211112-2345554332112
Q gi|254780282|r 107 LLQGNLKEFLLLYPDIQIQLIL--------------DNKDIDISMDYADCAIRLRK--PIQSSSLI-QRKLVTIHMHAYA 169 (299)
Q Consensus 107 ~l~~~l~~f~~~~P~i~i~i~~--------------~~~~~~l~~~~~Di~i~~~~--~~~~~~l~-~~~l~~~~~~~v~ 169 (299)
+-.+++..+.+.- ++++++.. +....+|..|++|+++..-. +.....+. ..+.+.....+++
T Consensus 71 f~iDL~~~ia~~l-g~~~e~~~v~d~~~~~~~~~~w~~~i~~l~~g~~Di~i~~~t~t~eR~~~v~Fs~Py~~~~~~i~~ 149 (294)
T 2rc8_A 71 YCIDLLEQLAEDM-NFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILV 149 (294)
T ss_dssp HHHHHHHHHHHHH-TEEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEEEEEE
T ss_pred EHHHHHHHHHHHH-CCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHCEECCCEECCCCEEEE
T ss_conf 6899999999981-996799980688634536788899999997799659953013687688531741204126604787
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCC--EEEEE-
Q ss_conf 344321112222221100-01123566433211000235665202234321211453242001356787384--23311-
Q gi|254780282|r 170 APHYLKNCREPLSIQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG--IALLP- 245 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~dL~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~G--ia~lp- 245 (299)
.++.. ......|+. ..+.+...-+.........++....... ........+++....+.++..|.| -+++-
T Consensus 150 ~~~~~----~~~~~~d~~l~~~~~g~~~Gtv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~g~g~vDa~i~d 224 (294)
T 2rc8_A 150 RTRGT----ELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEM-HEYMRRYNVPATPDGVQYLKNDPEKLDAFIMD 224 (294)
T ss_dssp ETTSC----CCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHHCHHH-HHHHGGGCBSSHHHHHHHHHSSSCCCSEEEEE
T ss_pred ECCCC----CCCCCCCHHHCCCEEEEEEEECCCCHHHHHHHHHHHHH-HHEEEEEECCCHHHHHHHHHCCCCEEEEEEEC
T ss_conf 45887----54432212404773323899666428999988640433-31035530387799998764278158999823
Q ss_pred ----HHHHCCCC--CEEEECCCCCCCCCEEEEEECCCCCCCHHHH
Q ss_conf ----77760199--8466177666766008999348778888999
Q gi|254780282|r 246 ----DYIVKDNP--NLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 (299)
Q Consensus 246 ----~~~~~~~~--~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~ 284 (299)
.+.+..++ .++.+... .....+++..+++..+...+.
T Consensus 225 ~~~~~~~~~~~~~~~l~~v~~~--~~~~~~gia~~k~s~l~~~in 267 (294)
T 2rc8_A 225 KALLDYEVSIDADCKLLTVGKP--FAIEGYGIGLPPNSPLTSNIS 267 (294)
T ss_dssp HHHHHHHHHTCSSSCEEECSCC--EEEEEECCEECTTCTHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEECCC--CCCCEEEEEECCCHHHHHHHH
T ss_conf 6889999986899868990687--776218999809849999999
No 269
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=36.93 E-value=5.9 Score=17.85 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.3
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 76899998828997899999999
Q gi|254780282|r 18 GSFTHAAEQLHLSQSSISRQISG 40 (299)
Q Consensus 18 gs~s~AA~~L~itq~avS~~i~~ 40 (299)
=++.-=|++.|||.+|||+.|..
T Consensus 4 ~Ti~dIA~~aGVS~sTVSraLn~ 26 (349)
T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVNQ 26 (349)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 76999999988699999999679
No 270
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=36.81 E-value=18 Score=15.00 Aligned_cols=37 Identities=8% Similarity=0.092 Sum_probs=28.3
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9999999982768999988289978999999999999
Q gi|254780282|r 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 8 L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~ 44 (299)
++....+-.=.|++..|+.++|+.++|++=+++.++.
T Consensus 29 ~~iv~~~e~G~s~~~vAre~gi~~stl~~W~k~~~~~ 65 (87)
T 2elh_A 29 IHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDKL 65 (87)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999879999999999797998999999999998
No 271
>1stz_A Heat-inducible transcription repressor HRCA homolog; circe element, structural genomics, BSGC structure funded by NIH; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=36.78 E-value=18 Score=15.00 Aligned_cols=64 Identities=20% Similarity=0.353 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHHH--------CCHHHHHH-HHCCCHHHHHHHHHHHHHHHCCEEEEE--CCCCEEEEECCCCCCC
Q ss_conf 8888999999999982--------76899998-828997899999999999958821797--6994685001343322
Q gi|254780282|r 2 SFDWDKLRVFYVVARS--------GSFTHAAE-QLHLSQSSISRQISGLETEVGIKLFYR--HARGLTLTEQGSKLHR 68 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~--------gs~s~AA~-~L~itq~avS~~i~~LE~~lg~~Lf~R--~~~~~~lT~~G~~l~~ 68 (299)
.||=|+.+.|.++++. ||=+-+.+ .+++|++||-.-++.||+. | |+.. +.-|=.||+.|-++|-
T Consensus 14 ~L~~R~~~IL~aiVe~Yi~t~~PVGSk~L~~~~~l~~SsATIRN~Ma~LE~~-G--~L~qpHTSaGRIPT~~GYR~YV 88 (338)
T 1stz_A 14 KLNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYL-G--YIYQPHTSAGRIPTDKGLRFYY 88 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHT-T--SEECCSSCSCBEECHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHC-C--CCCCCCCCCCEECCHHHHHHHH
T ss_conf 3289999999999999984398367899998728998808899999999978-6--7158999989207578899999
No 272
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343}
Probab=36.53 E-value=18 Score=14.98 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=17.5
Q ss_pred HHCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 82768999988289978999999
Q gi|254780282|r 16 RSGSFTHAAEQLHLSQSSISRQI 38 (299)
Q Consensus 16 ~~gs~s~AA~~L~itq~avS~~i 38 (299)
+--|...-|+++++|+++||+-.
T Consensus 22 ~gltq~~lA~~~gvs~~tis~~e 44 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWC 44 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 09989999999888999999998
No 273
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, ION-dipole interactions, electrostatics; 2.16A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1
Probab=36.33 E-value=4.8 Score=18.37 Aligned_cols=77 Identities=12% Similarity=0.006 Sum_probs=46.7
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCC
Q ss_conf 222333211100000000013566754200012222222---22222222222223456543211------112234555
Q gi|254780282|r 92 SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIRLRKPIQSS------SLIQRKLVT 162 (299)
Q Consensus 92 ~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~~~~~~~~~------~l~~~~l~~ 162 (299)
...|+++-+.++ ..++-.+...|.+.||+++|.+.... ...++..|.+|++. ...+..+. ++...++..
T Consensus 26 ~~~i~~~GSst~-~p~~~~~a~~f~~~~p~v~v~~~~~GSg~G~~~~~~G~~di~~-ssr~l~~~e~~~~~~~~~~~v~~ 103 (350)
T 1pc3_A 26 PVTLAETGSTLL-YPLFNLWGPAFHERYPNVTITAQGTGSGAGIAQAAAGTVNIGA-SDAYLSEGDMAAHKGLMNIALAI 103 (350)
T ss_dssp CEEEEEEECTTT-HHHHHHHHHHHHHHSTTEEEECCBCCHHHHHHHHHTTSCSEEE-ESSCCCHHHHHHSTTEEEEEEEE
T ss_pred CCEEEEECCCHH-HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEE-CCHHHHHHHHHHHCCCEEEEEEE
T ss_conf 766999750769-9999999999998888916999367768999999739997535-68767667778744936543798
Q ss_pred CCCCCCCC
Q ss_conf 43321123
Q gi|254780282|r 163 IHMHAYAA 170 (299)
Q Consensus 163 ~~~~~v~~ 170 (299)
+.++++..
T Consensus 104 ~~i~v~~~ 111 (350)
T 1pc3_A 104 SAQQVNYN 111 (350)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
T ss_conf 75688752
No 274
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=36.00 E-value=19 Score=14.93 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=15.1
Q ss_pred HHCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 827689999882899789999999
Q gi|254780282|r 16 RSGSFTHAAEQLHLSQSSISRQIS 39 (299)
Q Consensus 16 ~~gs~s~AA~~L~itq~avS~~i~ 39 (299)
+.+|....|+++|+|++.||++++
T Consensus 51 ~g~t~~~iA~~lg~s~~~V~~~l~ 74 (178)
T 1r71_A 51 KGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 178899999996999999999999
No 275
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, protein binding, transport protein; 1.92A {Chlamydia trachomatis}
Probab=34.28 E-value=20 Score=14.76 Aligned_cols=182 Identities=10% Similarity=-0.003 Sum_probs=78.0
Q ss_pred CCCCCCCCCCCCCC-----------CCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCC-CCC-CCCCCCC
Q ss_conf 22333211100000-----------000013566754200012222222---2222222222222345-654-3211112
Q gi|254780282|r 93 GKLRIATTIDLGQN-----------LLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIRL-RKP-IQSSSLI 156 (299)
Q Consensus 93 g~i~I~~~~~~~~~-----------~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~~-~~~-~~~~~l~ 156 (299)
.+|+||..+.+.+. +..+++..+.+.- ++++++...+ ....+..|++|+.+.. ... .....+.
T Consensus 11 ~~l~Vg~~~~~pP~~~~~~~G~~~G~~vDi~~~ia~~l-g~~v~~~~~~~~~~~~~l~~g~~d~~~~~~~~~~~r~~~~~ 89 (242)
T 3del_B 11 EKFIVGTNATYPPFEFVDKRGEVVGFDIDLAREISNKL-GKTLDVREFSFDALILNLKQHRIDAVITGMSITPSRLKEIL 89 (242)
T ss_dssp CEEEEEECSCBTTTBEECTTSCEESHHHHHHHHHHHHH-TCEEEEEECCGGGHHHHHHTTSSSEECSSBBCCHHHHTTEE
T ss_pred CEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 96999989988991589999988872999999999996-99769997898999999975986610035769988983136
Q ss_pred CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHH
Q ss_conf 23455-54332112344321112222221100011235664332110002356652022343212114532420013567
Q gi|254780282|r 157 QRKLV-TIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 (299)
Q Consensus 157 ~~~l~-~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v 235 (299)
..+.+ .....++..++ .....+++++..... +...+ .....++... +.....++++...++.++
T Consensus 90 ~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~V-gv~~g----s~~~~~l~~~------~~~~i~~~~~~~~~~~~L 154 (242)
T 3del_B 90 MIPYYGEEIKHLVLVFK----GENKHPLPLTQYRSV-AVQTG----TYQEAYLQSL------SEVHIRSFDSTLEVLMEV 154 (242)
T ss_dssp EEEEEEEEESEEEEEEE----SCCSCCCCGGGSSCE-EEETT----SHHHHHHHHS------TTCCEEEESSHHHHHHHH
T ss_pred CCCCCCCCCCEEEEEEC----CCCCCHHHHHCCCCE-EEECC----CHHHHHHHHC------CCCEEEEEECCCHHHHHH
T ss_conf 78643235532688631----543321344202200-24257----4358999856------587079861453125688
Q ss_pred HHHCC-EEEEEHHH----HCCCCCEE--EECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 87384-23311777----60199846--6177666766008999348778888999999999999
Q gi|254780282|r 236 VLGSG-IALLPDYI----VKDNPNLV--RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 236 ~~g~G-ia~lp~~~----~~~~~~lv--~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
..|.- ..+.+... ++..+.+. .+..........+++..+++ ++.....++.-+++
T Consensus 155 ~~griD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~k~---~~~l~~~ln~al~~ 216 (242)
T 3del_B 155 MHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASD---RPALALKIEAAVQE 216 (242)
T ss_dssp HTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEETT---CHHHHHHHHHHHHH
T ss_pred HCCCEEEEEECHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEEECC---CHHHHHHHHHHHHH
T ss_conf 639743999669999999985887634542268765432689999489---99999999999999
No 276
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=33.76 E-value=20 Score=14.71 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=11.7
Q ss_pred CHHHHHHHHCCCHHHHHHHH
Q ss_conf 68999988289978999999
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQI 38 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i 38 (299)
|-...|+++||++++||+-.
T Consensus 43 Sq~~lA~~~gis~~~ls~~E 62 (117)
T 3f52_A 43 TLRELAEASRVSPGYLSELE 62 (117)
T ss_dssp CHHHHHHHTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
T ss_conf 99999988533399999998
No 277
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=33.29 E-value=5.8 Score=17.87 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=6.1
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 978999999999999
Q gi|254780282|r 30 SQSSISRQISGLETE 44 (299)
Q Consensus 30 tq~avS~~i~~LE~~ 44 (299)
-|+.+-+-|-+=|.+
T Consensus 198 VQtptL~lIveRe~e 212 (659)
T 1i7d_A 198 VQTPVLGLVVRRDEE 212 (659)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 020466778887788
No 278
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription/DNA complex; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=33.05 E-value=21 Score=14.64 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=17.3
Q ss_pred HHHHHCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9998276899998828997899999
Q gi|254780282|r 13 VVARSGSFTHAAEQLHLSQSSISRQ 37 (299)
Q Consensus 13 ~v~~~gs~s~AA~~L~itq~avS~~ 37 (299)
.++..|. ...|+.+|++.|+|||-
T Consensus 21 rla~~Gq-~~vA~~~Gv~eStISRw 44 (83)
T 1zs4_A 21 KIAMLGT-EKTAEAVGVDKSQISRW 44 (83)
T ss_dssp HHHHHCH-HHHHHHHTSCHHHHHHH
T ss_pred HHHHHCC-HHHHHHHCCCHHHHHHH
T ss_conf 9998552-99999969989998730
No 279
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=32.59 E-value=21 Score=14.60 Aligned_cols=11 Identities=27% Similarity=0.329 Sum_probs=4.7
Q ss_pred HCCHHHHHHHH
Q ss_conf 27689999882
Q gi|254780282|r 17 SGSFTHAAEQL 27 (299)
Q Consensus 17 ~gs~s~AA~~L 27 (299)
.|.+..++..+
T Consensus 42 l~~l~~~~~~l 52 (373)
T 2qc0_A 42 LAELKQAGELL 52 (373)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHC
T ss_conf 99987698749
No 280
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum}
Probab=32.54 E-value=21 Score=14.59 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=46.7
Q ss_pred CCCHH---HHHHHHHHHHH----CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-CCEEEEECCCCC
Q ss_conf 88889---99999999982----7689999882899789999999999995882179769-946850013433
Q gi|254780282|r 2 SFDWD---KLRVFYVVARS----GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-RGLTLTEQGSKL 66 (299)
Q Consensus 2 ~md~~---~L~~f~~v~~~----gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l 66 (299)
||+++ .++.++.++.+ -|...-|+.++++++.|++-+++| ..-|.---.|+. +|+.|+...+..
T Consensus 6 ~m~~~f~iAl~~L~~La~~~~~~~ss~~IA~~~~i~~~~l~kil~~L-~~aGlv~s~rG~~GGy~La~~~~~I 77 (162)
T 3k69_A 6 NMKLDFSVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVL-HKHGYLTGTVGKNGGYQLDLALADM 77 (162)
T ss_dssp -CTHHHHHHHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHH-HHTTSSEEECSTTCEEECCSCGGGS
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEECCCCCCCCCCCCCHHHC
T ss_conf 12329999999999998389986669999988890999999999999-6479678348899974002795124
No 281
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=32.17 E-value=8.4 Score=16.94 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=9.7
Q ss_pred HHHHHHCCCHHHHHHHHHHH
Q ss_conf 99988289978999999999
Q gi|254780282|r 22 HAAEQLHLSQSSISRQISGL 41 (299)
Q Consensus 22 ~AA~~L~itq~avS~~i~~L 41 (299)
.|++++++|+.-+-...++|
T Consensus 292 ~a~~~~g~s~~~tl~iaQ~L 311 (592)
T 1mw9_X 292 AASTRLGFGVKKTMMMAQRL 311 (592)
T ss_dssp HHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
T ss_conf 99987099999999999999
No 282
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative stress, transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=31.70 E-value=22 Score=14.51 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=24.7
Q ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99827689999882899789999999999995
Q gi|254780282|r 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEV 45 (299)
Q Consensus 14 v~~~gs~s~AA~~L~itq~avS~~i~~LE~~l 45 (299)
-.+.-|+...|+.|++|.++|..++.+--..|
T Consensus 50 ~~~g~s~~eIA~~lgis~~tV~~~l~Ra~~~L 81 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99399999999998969999999999999999
No 283
>3dbw_A Transcriptional regulator, GNTR family; structural genomics, surface entropy reduction, PSI-2, protein structure initiative; 2.20A {Thermotoga maritima MSB8} PDB: 3fms_A*
Probab=31.23 E-value=23 Score=14.46 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=32.3
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEE-CCCCEEEEEC
Q ss_conf 6899998828997899999999999958821797-6994685001
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTEQ 62 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R-~~~~~~lT~~ 62 (299)
+-..=|+.++||.+.|-..++.||.+ -|+.. .++|+..++.
T Consensus 45 ~e~~La~~lgVSRtpVREAL~~L~~e---Glv~~~p~~G~~V~~~ 86 (226)
T 3dbw_A 45 NVRELSEKLGISFTPVRDALLQLATE---GLVKVVPRVGFFVTDV 86 (226)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHH---TSEEEETTTEEEECCC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC---CCCEECCCCCCCCCCC
T ss_conf 99999999892989999999999887---8934379998766544
No 284
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=31.07 E-value=23 Score=14.45 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=31.1
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEE-ECCCCEEEEEC
Q ss_conf 689999882899789999999999995882179-76994685001
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFY-RHARGLTLTEQ 62 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~-R~~~~~~lT~~ 62 (299)
+-..=|++++||.+.|-..++.||.+ -|+. +.++|...++.
T Consensus 51 ~e~~La~~~gvSRtpVREAL~~L~~e---Glv~~~p~~G~~V~~~ 92 (237)
T 3c7j_A 51 RQQELATLFGVSRMPVREALRQLEAQ---SLLRVETHKGAVVAPL 92 (237)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHT---TSEEEETTTEEEECCC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC---CCCEECCCCCCCCCCC
T ss_conf 99999998895869999999999987---8863238988744444
No 285
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=30.91 E-value=23 Score=14.43 Aligned_cols=38 Identities=13% Similarity=0.044 Sum_probs=24.9
Q ss_pred CCCC-H-HHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9888-8-9999999999827689999882899789999999
Q gi|254780282|r 1 MSFD-W-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQIS 39 (299)
Q Consensus 1 m~md-~-~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~ 39 (299)
||.. + +.|+....- .--|....|+.+++|+++||+-.+
T Consensus 1 Mn~~~ig~rik~~R~~-~glsq~~la~~~gvs~~~i~~~e~ 40 (76)
T 1adr_A 1 MNTQLMGERIRARRKK-LKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp CCSCCHHHHHHHHHHH-HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9889999999999999-399999999997969999999987
No 286
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=30.29 E-value=12 Score=15.99 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=20.9
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 008999348778888999999999999
Q gi|254780282|r 267 FTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 267 ~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
....++-.++..+..++..|++||.++
T Consensus 254 ~~~~~~I~~~skn~e~A~~Fi~fl~s~ 280 (292)
T 3cfz_A 254 IVYGMTVPTNAPHKKEAIEFVKFVLGH 280 (292)
T ss_dssp CEEEEECCTTCTTHHHHHHHHHHHHHC
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHCCH
T ss_conf 336899989999999999999997757
No 287
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=30.29 E-value=23 Score=14.37 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=32.1
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEE
Q ss_conf 6899998828997899999999999958821797699468500
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~ 61 (299)
|-..=|++++||..+|-+.++.|+++= -+..+.|+|.-.+.
T Consensus 36 se~~La~~~~VSr~TVR~Al~~L~~eG--li~~~~g~G~~V~~ 76 (243)
T 2wv0_A 36 SEREYAEQFGISRMTVRQALSNLVNEG--LLYRLKGRGTFVSK 76 (243)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTT--SEEECTTSCEEECC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCC--CEEEECCCCCCCCC
T ss_conf 799999997969999999999999779--97997884465578
No 288
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription/DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=29.71 E-value=24 Score=14.31 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=23.5
Q ss_pred CCHHHH-HHHHHHHHHCCHHHH--HHH-HCCCHHHHHHHHHH
Q ss_conf 888999-999999982768999--988-28997899999999
Q gi|254780282|r 3 FDWDKL-RVFYVVARSGSFTHA--AEQ-LHLSQSSISRQISG 40 (299)
Q Consensus 3 md~~~L-~~f~~v~~~gs~s~A--A~~-L~itq~avS~~i~~ 40 (299)
||..++ +-+......-+++.+ |+. ||.||+++|..+++
T Consensus 4 ldT~~ia~~Ik~~L~~~~I~Q~~fa~~vlg~SQ~tLS~lL~~ 45 (164)
T 2d5v_A 4 INTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRN 45 (164)
T ss_dssp CCHHHHHHHHHHHHHHTTCCHHHHHHHHTSCCHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCC
T ss_conf 179999999999998879978999999845788899998718
No 289
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=29.58 E-value=24 Score=14.30 Aligned_cols=60 Identities=22% Similarity=0.193 Sum_probs=44.8
Q ss_pred HHHHHHHHHHH-CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-CCEEEEECCCCCCCC
Q ss_conf 99999999982-7689999882899789999999999995882179769-946850013433222
Q gi|254780282|r 7 KLRVFYVVARS-GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-RGLTLTEQGSKLHRV 69 (299)
Q Consensus 7 ~L~~f~~v~~~-gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~ 69 (299)
.|..|-.+++- .|...=|+++++.+..+.+-++.|.. .-+|.+.+ +.+.+|+.++.|...
T Consensus 41 eLglfd~L~~gp~t~~eLA~~~g~~~~~l~rlLr~L~~---~Gll~e~~~g~y~~t~~s~~L~~~ 102 (360)
T 1tw3_A 41 TLRLVDHILAGARTVKALAARTDTRPEALLRLIRHLVA---IGLLEEDAPGEFVPTEVGELLADD 102 (360)
T ss_dssp HTTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHHHHHH---TTSEEEEETTEEEECTTGGGGSTT
T ss_pred HCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH---CCEEEEECCCEEECCHHHHHHCCC
T ss_conf 87985897469989999998869198999999999986---796998289848569889985039
No 290
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic binding protein, ABC transporter, transport protein, ligand; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=29.34 E-value=13 Score=15.78 Aligned_cols=36 Identities=17% Similarity=0.091 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 2223332111000000000135667542000122222
Q gi|254780282|r 92 SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 (299)
Q Consensus 92 ~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~ 128 (299)
...|+|....++. ..+-.++.+|.++||+|+|++..
T Consensus 42 ~~~Ltv~~~gs~~-~~~~~l~~~Fek~~P~IkV~~~~ 77 (354)
T 3k6v_A 42 GEVLTVFHAGSLS-VPFEELEAEFEAQHPGVDVQREA 77 (354)
T ss_dssp -CEEEEEEEGGGH-HHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CCEEEEEECCCCH-HHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 9769999806738-99999999999988492899996
No 291
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=28.27 E-value=25 Score=14.16 Aligned_cols=24 Identities=25% Similarity=0.113 Sum_probs=16.3
Q ss_pred HHHCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 982768999988289978999999
Q gi|254780282|r 15 ARSGSFTHAAEQLHLSQSSISRQI 38 (299)
Q Consensus 15 ~~~gs~s~AA~~L~itq~avS~~i 38 (299)
..--|...-|+++++++++||+--
T Consensus 25 ~~gltq~elA~~~gvs~~~is~~E 48 (83)
T 3f6w_A 25 AAGITQKELAARLGRPQSFVSKTE 48 (83)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 829999999989738999999998
No 292
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.19 E-value=7.4 Score=17.27 Aligned_cols=42 Identities=12% Similarity=0.298 Sum_probs=23.4
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEC
Q ss_conf 68999988289978999999999999588217976994685001
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~ 62 (299)
|.+.=|+.++||..+|.+.++.||++ |. +-.+.|+|+..+..
T Consensus 37 s~~~La~~~~VSr~tVr~Al~~L~~~-G~-i~~~~g~G~~V~~~ 78 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYLQSQ-EV-IYNKRGIGFFVASG 78 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHHTT-TS-EEEETTTEEEECTT
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC-CC-EEEECCEEEEECCC
T ss_conf 89999999698989999999999988-94-79971707898379
No 293
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=28.12 E-value=26 Score=14.15 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=10.2
Q ss_pred CHHHHHHHHCCCHHHHHH
Q ss_conf 689999882899789999
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISR 36 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~ 36 (299)
|-..-|+.+|||+++||+
T Consensus 26 tQ~elA~~lgvs~~ti~~ 43 (73)
T 3fmy_A 26 TQKEASEIFGGGVNAFSR 43 (73)
T ss_dssp CHHHHHHHHCSCTTHHHH
T ss_pred CHHHHHHHHCCCHHHHHH
T ss_conf 999999998979999999
No 294
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=27.39 E-value=26 Score=14.07 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=13.5
Q ss_pred CHHHHHHHHCCCHHHHHHHH
Q ss_conf 68999988289978999999
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQI 38 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i 38 (299)
|-..-|+.+|||+++||+-.
T Consensus 24 sq~elA~~lgvs~~~is~~e 43 (94)
T 2kpj_A 24 TQLEIAKSIGVSPQTFNTWC 43 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHH
T ss_conf 89999998892883699997
No 295
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=27.35 E-value=26 Score=14.07 Aligned_cols=22 Identities=23% Similarity=0.045 Sum_probs=16.8
Q ss_pred HCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 2768999988289978999999
Q gi|254780282|r 17 SGSFTHAAEQLHLSQSSISRQI 38 (299)
Q Consensus 17 ~gs~s~AA~~L~itq~avS~~i 38 (299)
--|....|+.++||+++||+--
T Consensus 16 gltq~elA~~~gis~~~is~~e 37 (71)
T 1zug_A 16 KMTQTELATKAGVKQQSIQLIE 37 (71)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHCCCCHHHHHHHH
T ss_conf 9999999784198999999998
No 296
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Probab=26.81 E-value=14 Score=15.71 Aligned_cols=25 Identities=12% Similarity=-0.041 Sum_probs=18.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 8999348778888999999999999
Q gi|254780282|r 269 VYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 269 ~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
.+++-.++......+..|++|+.+.
T Consensus 294 ~~~~i~~~s~~~e~A~~fl~~l~s~ 318 (409)
T 1eu8_A 294 WHIGISKYSDNKALAWEFVKFVESY 318 (409)
T ss_dssp EEEEEBTTCSCHHHHHHHHHHHTSH
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCH
T ss_conf 1024456787799999999996699
No 297
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=26.56 E-value=27 Score=13.98 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=10.5
Q ss_pred CCHHHHHHHHCCCHHHHHHH
Q ss_conf 76899998828997899999
Q gi|254780282|r 18 GSFTHAAEQLHLSQSSISRQ 37 (299)
Q Consensus 18 gs~s~AA~~L~itq~avS~~ 37 (299)
-|-...|+.++||+++||+-
T Consensus 37 lTq~elA~~lgvs~~tis~~ 56 (111)
T 3mlf_A 37 LTQKELGDLFKVSSRTIQNM 56 (111)
T ss_dssp CCHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHH
T ss_conf 99999999969899999999
No 298
>3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=26.02 E-value=14 Score=15.61 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=23.0
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 23332111000000000135667542000122222
Q gi|254780282|r 94 KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 (299)
Q Consensus 94 ~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~ 128 (299)
+|.|-.+. ....+-+++.+|.++||+|+|++..
T Consensus 35 ~l~v~s~~--~~~~~~~li~~Fe~~~PgI~V~~~~ 67 (355)
T 3c9h_A 35 TLVVYSSL--DEPLATPMIEGFQKANPDIAVHYED 67 (355)
T ss_dssp EEEEEECS--CHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred EEEEEECC--CHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 79999798--8789999999999878893899996
No 299
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima MSB8} PDB: 2gaj_A*
Probab=25.79 E-value=15 Score=15.56 Aligned_cols=22 Identities=23% Similarity=0.061 Sum_probs=13.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9998828997899999999999
Q gi|254780282|r 22 HAAEQLHLSQSSISRQISGLET 43 (299)
Q Consensus 22 ~AA~~L~itq~avS~~i~~LE~ 43 (299)
.|.++++.|+.-+-...++|=+
T Consensus 253 ~as~~~g~s~~~tl~iaQ~LYE 274 (633)
T 2gai_A 253 EAYSKLGFSVSKTMMIAQQLYE 274 (633)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9998839999999999999986
No 300
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3}
Probab=25.24 E-value=29 Score=13.84 Aligned_cols=21 Identities=10% Similarity=-0.021 Sum_probs=15.0
Q ss_pred CCHHHHHHHHC--CCHHHHHHHH
Q ss_conf 76899998828--9978999999
Q gi|254780282|r 18 GSFTHAAEQLH--LSQSSISRQI 38 (299)
Q Consensus 18 gs~s~AA~~L~--itq~avS~~i 38 (299)
-|....|+++| ||++++|+-=
T Consensus 22 ltq~elA~~~g~~is~~~is~~E 44 (71)
T 2ewt_A 22 LSLHGVEEKSQGRWKAVVVGSYE 44 (71)
T ss_dssp CCHHHHHHHTTTSSCHHHHHHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHH
T ss_conf 98999998988874799999998
No 301
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi}
Probab=24.98 E-value=29 Score=13.81 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=12.0
Q ss_pred CHHHHHHHHCCCHHHHHHH
Q ss_conf 6899998828997899999
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQ 37 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~ 37 (299)
|-...|+.+++|+++||+-
T Consensus 29 tq~elA~~lgvs~~~is~~ 47 (86)
T 3eus_A 29 TQADLAERLDKPQSFVAKV 47 (86)
T ss_dssp CHHHHHHHTTCCHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHH
T ss_conf 9999999979699999999
No 302
>1xma_A Predicted transcriptional regulator; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=24.90 E-value=19 Score=14.87 Aligned_cols=12 Identities=33% Similarity=0.299 Sum_probs=5.8
Q ss_pred CCCEEEEEECCC
Q ss_conf 660089993487
Q gi|254780282|r 265 PSFTVYFCYPEA 276 (299)
Q Consensus 265 ~~~~~~lv~~~~ 276 (299)
+++.+|-++.++
T Consensus 103 r~Rk~Y~IT~~G 114 (145)
T 1xma_A 103 KRRTYYRITPEG 114 (145)
T ss_dssp CEEEEEEECHHH
T ss_pred CCCEEEEECHHH
T ss_conf 765799989889
No 303
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=24.66 E-value=30 Score=13.77 Aligned_cols=22 Identities=23% Similarity=0.054 Sum_probs=17.3
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 7689999882899789999999
Q gi|254780282|r 18 GSFTHAAEQLHLSQSSISRQIS 39 (299)
Q Consensus 18 gs~s~AA~~L~itq~avS~~i~ 39 (299)
-|....|+.+|+|+++||+-.+
T Consensus 24 ltq~~lA~~~gvs~~~i~~~E~ 45 (77)
T 2b5a_A 24 VSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9999999897969999999987
No 304
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=24.41 E-value=23 Score=14.39 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=17.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 8778888999999999999850
Q gi|254780282|r 275 EALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 275 ~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
.++..++.-+.++|-+..++.+
T Consensus 117 ~GR~lT~~Gq~~LD~iA~~v~~ 138 (150)
T 2v7f_A 117 KGRVITPKGRSFLDKIATELKK 138 (150)
T ss_dssp TEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCEECHHHHHHHHHHHHHHHH
T ss_conf 9837898889999999999999
No 305
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibitory protein; transcription regulation, Trp RNA-binding attenuation protein; 2.8A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=24.31 E-value=8.8 Score=16.82 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=10.1
Q ss_pred CCCEEEEECCCCCCCCCCCC
Q ss_conf 99468500134332222222
Q gi|254780282|r 54 ARGLTLTEQGSKLHRVTSEV 73 (299)
Q Consensus 54 ~~~~~lT~~G~~l~~~a~~~ 73 (299)
++|+.||..|..|+..++..
T Consensus 31 ~kgviltaqg~tll~fi~kh 50 (53)
T 2bx9_A 31 GKGVILTAQGYTLLDFIQKH 50 (53)
T ss_dssp TSSEEECHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHH
T ss_conf 75369973553699999987
No 306
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, protein structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=24.30 E-value=30 Score=13.73 Aligned_cols=51 Identities=16% Similarity=0.045 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCEEE-EEC-----CCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 89978999999999999588217-976-----9946850013433222222222210
Q gi|254780282|r 28 HLSQSSISRQISGLETEVGIKLF-YRH-----ARGLTLTEQGSKLHRVTSEVYHKLE 78 (299)
Q Consensus 28 ~itq~avS~~i~~LE~~lg~~Lf-~R~-----~~~~~lT~~G~~l~~~a~~~l~~~~ 78 (299)
.+++++|-..+++||++==+.-- .-+ .+-+.+|+.|+..+..-...+..+.
T Consensus 44 ~~~~g~lY~~L~rLe~~G~I~~~~~~~~~g~~rk~Y~iT~~G~~~l~~~~~~~~~~~ 100 (117)
T 3elk_A 44 ALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDHSQALQLAR 100 (117)
T ss_dssp CCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHTSTTHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf 999764899999999889879997634789886698989889999999999999999
No 307
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) sequence RTPA; anti-trap, tryptophan RNA-binding attenuation protein; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=24.14 E-value=8.9 Score=16.81 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=9.7
Q ss_pred CCCEEEEECCCCCCCCCCCC
Q ss_conf 99468500134332222222
Q gi|254780282|r 54 ARGLTLTEQGSKLHRVTSEV 73 (299)
Q Consensus 54 ~~~~~lT~~G~~l~~~a~~~ 73 (299)
++|+.||..|..|+..++..
T Consensus 31 ~kgviltaqg~tll~fi~kh 50 (53)
T 3lcz_A 31 GKGVILTAQGSTLLHFIKKH 50 (53)
T ss_dssp TSSEEECHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHH
T ss_conf 75369973553699999987
No 308
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} PDB: 3f8c_A* 3f8f_A*
Probab=24.10 E-value=22 Score=14.47 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=33.3
Q ss_pred HCCCHHHHHHHHHHHHHHHCCEEE--EE----CCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 289978999999999999588217--97----699468500134332222222222101221
Q gi|254780282|r 27 LHLSQSSISRQISGLETEVGIKLF--YR----HARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 (299)
Q Consensus 27 L~itq~avS~~i~~LE~~lg~~Lf--~R----~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~ 82 (299)
..++++++=..+++||+.==+.-- .. ..+-+.+|+.|+..+.....-+..+....+
T Consensus 43 ~~i~~g~lY~~L~rL~~~GlI~~~~~~~~~g~~rk~Y~iT~~G~~~l~~~~~~~~~~~~~i~ 104 (116)
T 3f8b_A 43 MELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFESWSRVDKIIE 104 (116)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 16897754999999997897689963157898765999898899999999999999999999
No 309
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint center for structural genomics; HET: MSE; 1.92A {Ralstonia eutropha JMP134}
Probab=23.84 E-value=31 Score=13.68 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=31.6
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEE-CCCCEEEEECC
Q ss_conf 6899998828997899999999999958821797-69946850013
Q gi|254780282|r 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTEQG 63 (299)
Q Consensus 19 s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R-~~~~~~lT~~G 63 (299)
+-..=|++++||.+.|-..++.||.+ -|+.+ .++|+..++..
T Consensus 41 ~e~~La~~~gvSRtpVReAL~~L~~~---GlV~~~p~~G~~V~~~~ 83 (222)
T 3ihu_A 41 VETDLVAHFGVGRNSVREALQRLAAE---GIVDLQRHRGAVIRRLS 83 (222)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT---TSEEECSTTCEEECCCC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCC
T ss_conf 89999999893979999999999977---88121378875232331
No 310
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=23.71 E-value=31 Score=13.66 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=15.3
Q ss_pred HHCCHHHHHHHHCCCHHHHHHH
Q ss_conf 8276899998828997899999
Q gi|254780282|r 16 RSGSFTHAAEQLHLSQSSISRQ 37 (299)
Q Consensus 16 ~~gs~s~AA~~L~itq~avS~~ 37 (299)
+..|.+.-|++++||++++|+-
T Consensus 26 ~~~s~~elA~~~gis~~~is~i 47 (86)
T 2ofy_A 26 GDMSMVTVAFDAGISVETLRKI 47 (86)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCHHHHHHHHCCCHHHHHHH
T ss_conf 8789999999979799999999
No 311
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, protein structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=23.55 E-value=31 Score=13.65 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999998276899998828997899999999999
Q gi|254780282|r 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLET 43 (299)
Q Consensus 6 ~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~ 43 (299)
+.++++..+.+-.|+..=|+.+++|..+||+-=+.|..
T Consensus 47 ~R~~va~lL~~g~syreIa~~~gvS~aTIsRv~r~L~~ 84 (107)
T 3frw_A 47 QRFEVAKMLTDKRTYLDISEKTGASTATISRVNRSLNY 84 (107)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 99999999886999999999969874758999999883
No 312
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae TIGR4}
Probab=23.27 E-value=14 Score=15.66 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=15.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 7689999882899789999999
Q gi|254780282|r 18 GSFTHAAEQLHLSQSSISRQIS 39 (299)
Q Consensus 18 gs~s~AA~~L~itq~avS~~i~ 39 (299)
-|.+.-|+.+|||+++||+--+
T Consensus 15 lsq~eLA~~~Gis~~~is~~E~ 36 (158)
T 2p5t_A 15 LTQLEFARIVGISRNSLSRYEN 36 (158)
T ss_dssp ----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9999999998959999999987
No 313
>3jyv_T S19E protein; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus}
Probab=23.03 E-value=9.4 Score=16.66 Aligned_cols=22 Identities=5% Similarity=-0.136 Sum_probs=18.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 8778888999999999999850
Q gi|254780282|r 275 EALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 275 ~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
.++..+|.-+.++|-+..++.+
T Consensus 117 ~GR~iT~~G~~~LD~iA~~v~~ 138 (141)
T 3jyv_T 117 GGRRISENGQRDLDRIAAQTLE 138 (141)
T ss_dssp SSBCCCHHHHHHHHHHHHHHHH
T ss_pred CCCEECHHHHHHHHHHHHHHHH
T ss_conf 9837798789999999999986
No 314
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3
Probab=22.47 E-value=33 Score=13.52 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=17.0
Q ss_pred HHCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 827689999882899789999999
Q gi|254780282|r 16 RSGSFTHAAEQLHLSQSSISRQIS 39 (299)
Q Consensus 16 ~~gs~s~AA~~L~itq~avS~~i~ 39 (299)
+--|...-|+++|||+++||+-.+
T Consensus 13 ~g~tq~~lA~~~Gvs~~~is~~E~ 36 (111)
T 1b0n_A 13 KGYSLSELAEKAGVAKSYLSSIER 36 (111)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 399999998784988999999987
No 315
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=22.21 E-value=33 Score=13.49 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=16.1
Q ss_pred HCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 2768999988289978999999
Q gi|254780282|r 17 SGSFTHAAEQLHLSQSSISRQI 38 (299)
Q Consensus 17 ~gs~s~AA~~L~itq~avS~~i 38 (299)
--|-...|+.++++++++|+-.
T Consensus 14 gltq~elA~~~gis~~~~~~~e 35 (69)
T 1r69_A 14 GLNQAELAQKVGTTQQSIEQLE 35 (69)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHCCCCHHHHHHHH
T ss_conf 9999999886398999999998
No 316
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A*
Probab=22.13 E-value=25 Score=14.18 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=17.9
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9993487788889999999999998
Q gi|254780282|r 270 YFCYPEALKNTGKLKAFRNFIFLKA 294 (299)
Q Consensus 270 ~lv~~~~~~~~~~~~~f~d~l~~~~ 294 (299)
.++..++.....++..|++|+.++.
T Consensus 291 ~~~i~~~s~~~e~A~~fl~~l~s~~ 315 (412)
T 2z8f_A 291 AVAVLKNSKHPKEAMEFLDWFNTQV 315 (412)
T ss_dssp EEEEBTTCSCHHHHHHHHHHHTTCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 0035689957999999999998169
No 317
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=21.85 E-value=21 Score=14.62 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 2222223332111-000000000135667542000122222
Q gi|254780282|r 89 VKPSGKLRIATTI-DLGQNLLQGNLKEFLLLYPDIQIQLIL 128 (299)
Q Consensus 89 ~~~~g~i~I~~~~-~~~~~~l~~~l~~f~~~~P~i~i~i~~ 128 (299)
...+|+|++-... .--...+-.++.+|.++||+|+|++..
T Consensus 24 ~~~~gtit~w~~~~~~~~~~~~~~i~~Fek~~p~i~V~~~~ 64 (412)
T 3k01_A 24 VELSGTVTFWDTSNEAEKATYQALAEGFEKEHPKVDVKYVN 64 (412)
T ss_dssp CCCCEEEEEEECCCTTTHHHHHHHHHTHHHHCTTEEEEEEE
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 34460899995898125999999999999888392899997
No 318
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=21.73 E-value=34 Score=13.43 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9999999999827689999882899789999999
Q gi|254780282|r 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQIS 39 (299)
Q Consensus 6 ~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~ 39 (299)
+-|+-+....-.+|-+.=|+.++||+++||+-.+
T Consensus 9 e~l~Rl~~~~g~~sq~eLA~~lGvs~stis~~e~ 42 (189)
T 2fjr_A 9 DVLDRICEAYGFSQKIQLANHFDIASSSLSNRYT 42 (189)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999982998799999997979999999982
No 319
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=21.46 E-value=34 Score=13.40 Aligned_cols=28 Identities=7% Similarity=0.103 Sum_probs=24.3
Q ss_pred HCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 2768999988289978999999999999
Q gi|254780282|r 17 SGSFTHAAEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 17 ~gs~s~AA~~L~itq~avS~~i~~LE~~ 44 (299)
..+++..|+.|+|+++++.+=+++.+..
T Consensus 30 g~~~~~va~~Lgi~~~tl~~Wv~~~~~~ 57 (108)
T 2rn7_A 30 WATICSIAPKIGCTPETLRVWVRQHERD 57 (108)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 5519999999797999999999997230
No 320
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=21.31 E-value=35 Score=13.38 Aligned_cols=127 Identities=9% Similarity=-0.059 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCC--C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00013566754200012222222---222222222222234565432--1-11122345554332112344321112222
Q gi|254780282|r 108 LQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIRLRKPIQ--S-SSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 (299)
Q Consensus 108 l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~~~~~~~--~-~~l~~~~l~~~~~~~v~~~~~~~~~~~~~ 181 (299)
..+++..+.++- ++++++.... ....+..++.|+++....... . .-....++......++..++.. ...
T Consensus 30 ~~Dl~~~ia~~l-g~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~eR~~~~~~s~p~~~~~~~~~~~~~~~----~~~ 104 (239)
T 1lst_A 30 DIDLGNEMCKRM-QVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSP----IQP 104 (239)
T ss_dssp HHHHHHHHHHHH-TCEEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHHHCEECSCSBCCCEEEEEETTCC----CCS
T ss_pred HHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHCCCCCEEEECCCCCHHHHHHCCCCCCEEECCCCCCCCCCCC----CCC
T ss_conf 999999999995-996899980307678998668767899678799789852013574574143110015887----679
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCEEE-EEHH
Q ss_conf 22110001123566433211000235665202234321211453242001356787384233-1177
Q gi|254780282|r 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL-LPDY 247 (299)
Q Consensus 182 ~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gia~-lp~~ 247 (299)
+++||.+....... +.. ....+..... .+......+++...+..++..|..=++ ....
T Consensus 105 ~~~dL~~~~i~~~~-g~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~g~vD~~i~~~~ 163 (239)
T 1lst_A 105 TLESLKGKHVGVLQ-GST----QEAYANDNWR---TKGVDVVAYANQDLIYSDLTAGRLDAALQDEV 163 (239)
T ss_dssp SHHHHTTCEEEEET-TSH----HHHHHHHHTG---GGTCEEEEESSHHHHHHHHHTTSCSEEEEEHH
T ss_pred CHHHHCCCEEEEEC-CCH----HHHHHHHHHC---CCEEEEEEECCHHHHHHHHHCCCEEEEEECHH
T ss_conf 97896899899985-752----7766665413---31023563089899999998497139994389
Done!