RPSBLAST alignment for GI: 254780282 and conserved domain: TIGR03339

>gnl|CDD|132382 TIGR03339, phn_lysR, aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466). Length = 279
 Score = 99.4 bits (248), Expect = 9e-22
 Identities = 68/254 (26%), Positives = 117/254 (46%), Gaps = 15/254 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F+ VAR GSFT AAE+L LSQ +++ Q+  LE   G++LF+R+ R L LT+ G +L
Sbjct: 1   QLKAFHAVARCGSFTRAAERLGLSQPTVTDQVRKLEERYGVELFHRNGRRLELTDAGHRL 60

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +   ++ +    +  L+ES     G LRIA T       +   +  F   YP I++ +
Sbjct: 61  LPIVERLFQQEAEAEFLLRESGALREGSLRIAAT---APYYVLDLVARFRQRYPGIEVSV 117

Query: 127 ILDNKDIDIS--MDY-ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            + N    +     Y  D A+          L +  L    + A     +    RE +++
Sbjct: 118 RIGNSQEVLQALQSYRVDVAVSSEVV-DDPRLDRVVLGNDPLVAVVHRQHPLAERESVTL 176

Query: 184 QELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +EL    L+    G +  +  E+    A V      PR   L++ S  +I +  + G G+
Sbjct: 177 EELAGQPLLMREPGSVTRQTTEEALAAAGV-----APR-PALEIGSREAIREAVLAGLGV 230

Query: 242 ALLPDYIVKDNPNL 255
           +++    V  +P L
Sbjct: 231 SVVSAAEVGRDPRL 244