RPSBLAST alignment of GI: 254780282 and protein with PDBid: 1uth

>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A Length = 315

 Score =  130 bits (328), Expect = 3e-31
 Identities = 49/296 (16%), Positives = 83/296 (28%), Gaps = 13/296 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D + L VF  +    S + A E+L L+Q ++S  +  L T +   LF R ++G+  T 
Sbjct: 13  DIDLNLLVVFNQLLLDRSVSTAGEKLGLTQPAVSNSLKRLRTALNDDLFLRTSKGMEPTP 72

Query: 62  QGSKLHRVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
               L        + L+T             +    +A T       +   ++      P
Sbjct: 73  YALHLAEPVIYALNTLQTALTTRNSFDPFASTRTFNLAMTDIGEMYFMPPLMEALAQRAP 132

Query: 121 DIQIQLILDNKD---IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            IQI  +  N      D+     D A+ L  P   +   QR+L            +    
Sbjct: 133 HIQISTLRPNAGNLKEDMESGAVDLALGLL-PELQTGFFQRRLFRHRYVCMFRKDHPSAK 191

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
                 Q  +  ++            D           G  R   L V  +++I      
Sbjct: 192 SPMSLKQFSELEHVGVVALNTGHGEVDGLL-----ERAGIKRRMRLVVPHFIAIGPILHS 246

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              IA +P            L         P   +   +             R   
Sbjct: 247 TDLIATVPQRFAVRCEVPFGLTTSPHPAKLPDIAINLFWHAKYNRDPGNMWLRQLF 302