RPSBLAST alignment of GI: 254780282 and protein with PDBid: 3isp

>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis} Length = 303

 Score =  137 bits (346), Expect = 2e-33
 Identities = 47/299 (15%), Positives = 99/299 (33%), Gaps = 16/299 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +L     V   GSF  AAE+LH++ S++S++I  LE +VG  L  R  +    T  
Sbjct: 6   LDGPQLAALAAVVELGSFDAAAERLHVTPSAVSQRIKSLEQQVGQVLVVRE-KPCRATTA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R+ ++          E+  ++     ++ IA   D               +  D+
Sbjct: 65  GIPLLRLAAQTALLESEALAEMGGNASLKRTRITIAVNADSMATWFSAVFDGLGDVLLDV 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL-KNCREPL 181
           +I+    +  +      A  A+   +           L  +     A+  ++ ++  +  
Sbjct: 125 RIEDQDHSARLLRE-GVAMGAVTTERN-PVPGCRVHPLGEMRYLPVASRPFVQRHLSDGF 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +     K   + +       ++D        R I  P      V +          G G 
Sbjct: 183 TXXXXXKAPSLAWNR--DDGLQDMLVRKAFRRAITRPTH---FVPTTEGFTAAARAGLGW 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            + P+ +      + + VR+ +        V   +     ++  +    + +   A   
Sbjct: 238 GMFPEKLAASPLADGSFVRVCD----IHLDVPLYWQCWKLDSPIIARITDTVRAAASGL 292