HHsearch alignment for GI: 254780283 and conserved domain: COG1251
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion].
Probab=100.00 E-value=4.6e-34 Score=217.45 Aligned_cols=286 Identities=22% Similarity=0.261 Sum_probs=201.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 5199998977799999999986---9959999678877568750100787747777897899986643232002322211
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARA---MLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~---g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~--nY~Ri~Ls~v--l~~~~~~edi~l~~~dwy~~~~i~L~~~ 79 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRP--NYNRILLSSV--LAGEKTAEDISLNRNDWYEENGITLYTG 79 (793)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCC--CCCCEEECCC--CCCCCCHHHHHCCCHHHHHHCCCEEECC
T ss_conf 04899924640267999998308655048995267776--6441000000--2898668887603220587759189718
Q ss_pred -EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCC--CCC-CCEEEEECCCCC
Q ss_conf -3320112222222222222222100001477664202465277433202101211111111--122-100001025565
Q gi|254780283|r 83 -LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFF--YKN-KDVIVVGGGNTA 158 (321)
Q Consensus 83 -~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d~~~--~~~-k~v~ViGgG~~g 158 (321)
T Consensus 80 ~~v~~idr~~k--~V~t~~g~~~~YDkLilATGS~pfi~PiPG~d~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLG 157 (793)
T COG1251 80 EKVIQIDRANK--VVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLG 157 (793)
T ss_pred CEEEEECCCCC--EEECCCCCEEECCEEEECCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCEEECCCHHH
T ss_conf 80478516765--6884688584043278705765565678998778712783199999999998606885897551141
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 4310121013332223443433221------1112112235544332222311211486433344444333142032100
Q gi|254780283|r 159 AEEALHLAKIARRVTIVHRRSSLRS------EKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEG 232 (321)
Q Consensus 159 ~e~A~~L~~~~~~Vtli~r~~~l~~------~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g 232 (321)
T Consensus 158 lEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g-------~~~~~~vr~~DG--- 227 (793)
T COG1251 158 LEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG-------EDKVEGVRFADG--- 227 (793)
T ss_pred HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHC-------CCCEEEEEECCC---
T ss_conf 6788788747973489873366889765268899999998860604531320245645-------764036760568---
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCH---HHHHHHHHHHHHHHHHH
Q ss_conf 000112222111232235656774256180699799008885547898289701268844---56789999799999999
Q gi|254780283|r 233 NFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERY---RQAITAAAMGCMAALEV 309 (321)
Q Consensus 233 ~~~~i~~D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~---~~~~~A~~~G~~Aa~~i 309 (321)
T Consensus 228 --~~i~ad~VV~a~GIrPn~ela~~aGlavnrG--Ivvnd~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeqa~v~a~hl 303 (793)
T COG1251 228 --TEIPADLVVMAVGIRPNDELAKEAGLAVNRG--IVVNDYMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHL 303 (793)
T ss_pred --CCCCCEEEEEECCCCCCCHHHHHCCCCCCCC--EEECCCCCCCCCCEEEHHHHHHHCCCCCEEHHHHHHHHHHHHHHH
T ss_conf --7344206999623046617678617665898--056365555677766517689761844001268999999999875
Q ss_pred HH
Q ss_conf 99
Q gi|254780283|r 310 EH 311 (321)
Q Consensus 310 ~~ 311 (321)
T Consensus 304 ~~ 305 (793)
T COG1251 304 CG 305 (793)
T ss_pred CC
T ss_conf 06