HHsearch alignment for GI: 254780283 and conserved domain: COG1251
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion].
Probab=97.42 E-value=0.00026 Score=43.76 Aligned_cols=101 Identities=22% Similarity=0.223 Sum_probs=68.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 67519999897779999999998699599996788775687501007877477778978999866432320023222113
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQDL 83 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~~ 83 (321)
T Consensus 144 ~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~---lMe-rQ--------LD~~ag~l---L~~~le~~Gi~~~l~~ 208 (793)
T COG1251 144 NKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT---LME-RQ--------LDRTAGRL---LRRKLEDLGIKVLLEK 208 (793)
T ss_pred CCCCCEEECCCHHHHHHHHHHHHCCCCEEEEEECCH---HHH-HH--------HHHHHHHH---HHHHHHHHCCEEECCC
T ss_conf 068858975511416788788747973489873366---889-76--------52688999---9999886060453132
Q ss_pred -EEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEE
Q ss_conf -320112222222222222222100001477664202
Q gi|254780283|r 84 -VVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKW 119 (321)
Q Consensus 84 -V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~ 119 (321)
T Consensus 209 ~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ 245 (793)
T COG1251 209 NTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPND 245 (793)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCCCC
T ss_conf 0245645764036760568734420699962304661