HHsearch alignment for GI: 254780283 and conserved domain: COG1251

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion].
Probab=97.42  E-value=0.00026  Score=43.76  Aligned_cols=101  Identities=22%  Similarity=0.223  Sum_probs=68.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf             67519999897779999999998699599996788775687501007877477778978999866432320023222113
Q gi|254780283|r    4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQDL   83 (321)
Q Consensus         4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~~   83 (321)
T Consensus       144 ~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~---lMe-rQ--------LD~~ag~l---L~~~le~~Gi~~~l~~  208 (793)
T COG1251         144 NKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT---LME-RQ--------LDRTAGRL---LRRKLEDLGIKVLLEK  208 (793)
T ss_pred             CCCCCEEECCCHHHHHHHHHHHHCCCCEEEEEECCH---HHH-HH--------HHHHHHHH---HHHHHHHHCCEEECCC
T ss_conf             068858975511416788788747973489873366---889-76--------52688999---9999886060453132


Q ss_pred             -EEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEE
Q ss_conf             -320112222222222222222100001477664202
Q gi|254780283|r   84 -VVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKW  119 (321)
Q Consensus        84 -V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~  119 (321)
T Consensus       209 ~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~  245 (793)
T COG1251         209 NTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPND  245 (793)
T ss_pred             HHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCCCC
T ss_conf             0245645764036760568734420699962304661