HHsearch alignment for GI: 254780283 and conserved domain: COG1252
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].
Probab=100.00 E-value=3.6e-40 Score=253.06 Aligned_cols=289 Identities=22% Similarity=0.283 Sum_probs=208.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCCC
Q ss_conf 6751999989777999999999869--959999678877568750100787747777897899986643232002-3222
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAM--LKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFG-TKII 80 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g--~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~-v~~~ 80 (321)
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h---l~~plL~eva~--g~l~~~~i~~p~~~~~~~~~~v~~~ 76 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH---LFTPLLYEVAT--GTLSESEIAIPLRALLRKSGNVQFV 76 (405)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC---CCCHHHHHHHC--CCCCHHHEECCHHHHHCCCCCEEEE
T ss_conf 975699989867999999976416788718999188766---66303355632--8777565213089984235744899
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCC--EEECCCCCCC--------CCCCCC-C---
Q ss_conf 1133201122222222222222221000014776642024652774332--0210121111--------111112-2---
Q gi|254780283|r 81 QDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQ--GFGVSACATC--------DGFFYK-N--- 146 (321)
Q Consensus 81 ~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~--~~~v~~~~~~--------d~~~~~-~--- 146 (321)
T Consensus 77 ~~~V~~ID~~~k--~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~ 154 (405)
T COG1252 77 QGEVTDIDRDAK--KVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRA 154 (405)
T ss_pred EEEEEEECCCCC--EEEECCCCCCCCCEEEEECCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 978999715679--899578870236389994587667689978787077778899999999999999998633564344
Q ss_pred -CCEEEEECCCCCCCCEEEEECCCC-------------CCCCCCCCCCCCCC--CC---CCCCCCCCCCCCCCCCCCEEE
Q ss_conf -100001025565431012101333-------------22234434332211--11---211223554433222231121
Q gi|254780283|r 147 -KDVIVVGGGNTAAEEALHLAKIAR-------------RVTIVHRRSSLRSE--KI---LQEKLFLQSNIDFLFDTEVVD 207 (321)
Q Consensus 147 -k~v~ViGgG~~g~e~A~~L~~~~~-------------~Vtli~r~~~l~~~--~~---~~~~~~~~~~i~~~~~~~v~~ 207 (321)
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~ 234 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTE 234 (405)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHCCCCCHHHHHHHHHHHHHCCCEEECCCCEEE
T ss_conf 11899989882389999999999998765334786531899982571213588889999999999987978986981489
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC--CCCEECCCCEEEECCCCCCCCCCEEEEC
Q ss_conf 14864333444443331420321000001122221112322356567742--5618069979900888554789828970
Q gi|254780283|r 208 VIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRH--QLKMTNTNYIWTMPDSTATSIPGIFAAG 285 (321)
Q Consensus 208 i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~--~~~~~~~g~i~~~~~~~~Ts~p~Iya~G 285 (321)
T Consensus 235 v~~~~-----------v~~~~---g~~-~I~~~tvvWaaGv~a~~-~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~G 298 (405)
T COG1252 235 VTPDG-----------VTLKD---GEE-EIPADTVVWAAGVRASP-LLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAG 298 (405)
T ss_pred ECCCC-----------EEECC---CCE-EEECCEEEECCCCCCCH-HHHHCCHHHHCCCCCEEECCCCCCCCCCCEEEEE
T ss_conf 76991-----------79755---883-77627799857775786-6663270221348977757875169989869971
Q ss_pred CCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1268844-----56789999799999999999974
Q gi|254780283|r 286 DVADERY-----RQAITAAAMGCMAALEVEHYLSI 315 (321)
Q Consensus 286 Dv~~~~~-----~~~~~A~~~G~~Aa~~i~~yl~~ 315 (321)
T Consensus 299 D~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 299 DCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 11037688879981188999999999999999649