HHsearch alignment for GI: 254780283 and conserved domain: PRK05192
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated.
Probab=99.25 E-value=1.7e-11 Score=85.67 Aligned_cols=115 Identities=28% Similarity=0.348 Sum_probs=75.3
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCEEE--EE----------CCC------------------
Q ss_conf 9876751999989777999999999869959999678-8775687--50----------100------------------
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQLM--IT----------ESI------------------ 49 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG~l~--~~----------~~i------------------ 49 (321)
T Consensus 2 ~~~~~yDVIViG~GhAG~EAa~aaar~G~~t~lit~~~~~ig~msCNPsiGGi~KG~lvrEidaLgG~mg~~aD~~~Iq~ 81 (621)
T PRK05192 2 YYPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAADKTGIQF 81 (621)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 98887988998975799999999996799679996581311586045203672165766687753689999998876168
Q ss_pred --CCC---CC---CCCCCCHHHHHHHHHHHHHHC-CCCCCCEEEEECCCCCCCCC-CCCCCCCCCCCCEECCCCCC
Q ss_conf --787---74---777789789998664323200-23222113320112222222-22222222210000147766
Q gi|254780283|r 50 --ENY---PG---FATSIRGDWLMEQMRQQAENF-GTKIIQDLVVSVDLDRHPFL-VETQSGDLWHADAVVIATGS 115 (321)
Q Consensus 50 --~n~---~g---~~~~~~~~~l~~~~~~~~~~~-~v~~~~~~V~~i~~~~~~~~-v~~~~g~~~~a~~lIiAtG~ 115 (321)
T Consensus 82 r~LN~sKGpAv~~~RaQ~Dr~~Y~~~~~~~l~~~~nl~i~~~~v~~l~~~~~~v~GV~~~~g~~i~a~~vvlttGT 157 (621)
T PRK05192 82 RMLNTSKGPAVRAPRAQADRKLYRAAMREILENQPNLTLFQGEVEDLIVENDRVKGVVTQDGLEFRAKAVVLTTGT 157 (621)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCEEEEEEECCCEEEEEEEEEEECCC
T ss_conf 7615888830067398885999999999999649997899814579998799999999668709985269983156