HHsearch alignment for GI: 254780283 and conserved domain: TIGR01372
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=93.59 E-value=0.025 Score=32.22 Aligned_cols=100 Identities=24% Similarity=0.265 Sum_probs=56.4
Q ss_pred CEEEEECCCCCCCCEEEEECCCCCCCCCCCCCC----CCCC-----------CCC---CCCCCCCCCCCCCCCCCEEECC
Q ss_conf 000010255654310121013332223443433----2211-----------112---1122355443322223112114
Q gi|254780283|r 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS----LRSE-----------KIL---QEKLFLQSNIDFLFDTEVVDVI 209 (321)
Q Consensus 148 ~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~----l~~~-----------~~~---~~~~~~~~~i~~~~~~~v~~i~ 209 (321)
T Consensus 178 DVLVVGaGPAGLAAA~aAa~~GArViL~DE~~~~GGsL~~~~g~~IDG~PA~~W~~~t~aeL~a~~~v~~L~RTT~~G~Y 257 (1026)
T TIGR01372 178 DVLVVGAGPAGLAAALAAARAGARVILVDEQAEAGGSLLSEAGETIDGKPAADWAAATVAELEALPEVTLLPRTTAFGYY 257 (1026)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCEEEEE
T ss_conf 47887889679999999964798899970676577755677876017801899999999997418981674354055451
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCC----CCCCCCCCCCCCCCC
Q ss_conf 8643334444433314203210000----011222211123223
Q gi|254780283|r 210 GSIPEPPLFPSVSGVRLHNKKEGNF----FERNVDGIFIAIGYK 249 (321)
Q Consensus 210 g~~~~~~~~~~~~~v~~~~~~~g~~----~~i~~D~vi~a~G~~ 249 (321)
T Consensus 258 D~N~~g~~E-R~~-DHL~~P~~g~~ReRlWrvRAkrvVLA~GA~ 299 (1026)
T TIGR01372 258 DHNTVGALE-RVT-DHLDAPAKGVPRERLWRVRAKRVVLATGAL 299 (1026)
T ss_pred CCCEEEEEE-EHH-CCCCCCCCCCCCCEEEEECCCEEEECCCCC
T ss_conf 477478762-011-366778874853305777253456605764