HHsearch alignment for GI: 254780283 and conserved domain: TIGR02374
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=98.46 E-value=1.1e-07 Score=63.58 Aligned_cols=103 Identities=23% Similarity=0.224 Sum_probs=74.2
Q ss_pred CCCCCCEE------EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHH-HHHHHHHH
Q ss_conf 98767519------999897779999999998699599996788775687501007877477778978999-86643232
Q gi|254780283|r 1 MASHDSKI------LIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLM-EQMRQQAE 73 (321)
Q Consensus 1 M~~~~~dV------vIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~-~~~~~~~~ 73 (321)
T Consensus 137 ~A~~~~~aGhtdGGaViGGGLLGLEAA~aL~~LG~~v~Vi~~~p---~LM~-----------~QL--D~~aG~lL~~~le 200 (813)
T TIGR02374 137 AAQRFKKAGHTDGGAVIGGGLLGLEAARALKNLGMDVSVIELAP---FLMA-----------KQL--DQTAGRLLQRELE 200 (813)
T ss_pred HHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHCCCEEEHHHHHH---HHHH-----------HHH--HHHHHHHHHHHHH
T ss_conf 99863126766785588674158899999987797064467648---9899-----------999--9999999999998
Q ss_pred HCCCCCCC--E--EEEECCCC--CCCCCCCCCCCCCCCCCEECCCCCCCCEE
Q ss_conf 00232221--1--33201122--22222222222222100001477664202
Q gi|254780283|r 74 NFGTKIIQ--D--LVVSVDLD--RHPFLVETQSGDLWHADAVVIATGSEVKW 119 (321)
Q Consensus 74 ~~~v~~~~--~--~V~~i~~~--~~~~~v~~~~g~~~~a~~lIiAtG~~~~~ 119 (321)
T Consensus 201 ~~G~~~l~Gt~k~t~eiv~~~d~~~~~~~rf~DG~~l~aDlvv~A~GirP~~ 252 (813)
T TIGR02374 201 KKGLTVLLGTEKDTVEIVGEDDVEKVERLRFKDGSSLEADLVVFAAGIRPRD 252 (813)
T ss_pred HCCCEEEECCCCCEEEEEECCCHHHHCEEECCCCCEEEECEEEEECCCCCCH
T ss_conf 5795798617611057641564012312242389788703799951566636