HHsearch alignment for GI: 254780283 and conserved domain: TIGR02734
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105 Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=92.97 E-value=0.014 Score=33.58 Aligned_cols=90 Identities=20% Similarity=0.266 Sum_probs=58.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH--HCCCCCCCE-
Q ss_conf 51999989777999999999869959999678877568750100787747777897899986643232--002322211-
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAE--NFGTKIIQD- 82 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~--~~~v~~~~~- 82 (321)
T Consensus 192 Fh~l~~Gg~P~-~~S~Y~Lis~------le~~~--GV~--------fP--~GG~--~al~~am~~l~~e~~~g~~~~~~~ 250 (526)
T TIGR02734 192 FHALFVGGNPF-TSSIYALISA------LEREW--GVW--------FP--RGGT--GALVAAMAKLFEEADLGGELRLNA 250 (526)
T ss_pred CCCEECCCCCH-HHHHHHHHHH------HHHHC--CCC--------CC--CCHH--HHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 56321069831-6899999987------54426--740--------15--6538--899999999997468746997455
Q ss_pred EEEECCCCC-------C-CCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 332011222-------2-222222222222100001477664
Q gi|254780283|r 83 LVVSVDLDR-------H-PFLVETQSGDLWHADAVVIATGSE 116 (321)
Q Consensus 83 ~V~~i~~~~-------~-~~~v~~~~g~~~~a~~lIiAtG~~ 116 (321)
T Consensus 251 ~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ad~VvSnAD~~ 292 (526)
T TIGR02734 251 EVIRIETEGGKTVATGGRATAVHLADGERLDADAVVSNADLV 292 (526)
T ss_pred CEEEEEECCCCEEEECCEEEEEECCCCEEEEEEEEEECCCHH
T ss_conf 311446216742331652434550654033112788748756